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Sed0026434 (gene) of Chayote v1 genome

Gene IDSed0026434
OrganismSechium edule (Chayote v1)
Descriptiontranscription factor bHLH160
Genome locationLG10:34994266..34999655
RNA-Seq ExpressionSed0026434
SyntenySed0026434
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR015660 - Achaete-scute transcription factor-related
IPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008449406.1 PREDICTED: transcription factor bHLH100 [Cucumis melo]1.1e-1832.59Show/hide
Query:  MALRPWEENTLLDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNIINYGKIGGSSNNI----
        M+L PWEE+ L+DE+N + E E     PL   N +NNN   E    L KSG+  L L  NEI+  SLVE + LL L++ DN    YG +   ++ +    
Subjt:  MALRPWEENTLLDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNIINYGKIGGSSNNI----

Query:  -----------NEASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS--------------------------------------------------
                   +   NAKKEEHNA+ER+RR++LS ++FSLRSLLPNARRS                                                  
Subjt:  -----------NEASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS--------------------------------------------------

Query:  -----------------------------------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQ-VNRSLLEAGNH
                                                             KA+ +GLRIIGAS VSVS     D   LT HLH+Q ++RSL EA ++
Subjt:  -----------------------------------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQ-VNRSLLEAGNH

Query:  ESILRKKVISWIC
        +SI RK+VISW+C
Subjt:  ESILRKKVISWIC

XP_022159073.1 transcription factor bHLH160 [Momordica charantia]1.0e-1932.63Show/hide
Query:  MALRPWEENTL-LDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNIINYGKIGGSSNNINEA
        MAL PWEE+ L +D+N   +EREN  + P+   + N NNI E   +H  K+                                              N  
Subjt:  MALRPWEENTL-LDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNIINYGKIGGSSNNINEA

Query:  SNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS----------------------------------------------------------------
        +NAKKEEHNAKERERRMKLSQT+FSLRSLLPN+RRS                                                                
Subjt:  SNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS----------------------------------------------------------------

Query:  ---------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQVNRSLLEAGNHESILRKKVISWI
                                   KA+A+G+ IIGAS VSV    S D PTLTCHLH+Q+N SL E+ ++ES+LRKKVISW+
Subjt:  ---------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQVNRSLLEAGNHESILRKKVISWI

XP_022967618.1 transcription factor bHLH160 [Cucurbita maxima]5.7e-1835.17Show/hide
Query:  MALRPWEE-NTLLDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNIINYGKIGGSSN-----
        MA+ PWE   TL DENN                       GEE ++ L K G    E    E   GS+ E AALL LE+D      YG  G  +      
Subjt:  MALRPWEE-NTLLDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNIINYGKIGGSSN-----

Query:  -NIN-EASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS---------------------------------------------------------
         N N E SNAKKEEHNA+ER+RRM+LSQ +FSLRSLLPNARRS                                                         
Subjt:  -NIN-EASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS---------------------------------------------------------

Query:  ---------------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQVNRSLLEAGNHESILRKKVISW
                                         KA+ DGLRIIGASA+SV    SD  PTLT HLH Q++RS+ E  +++SILRK+VISW
Subjt:  ---------------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQVNRSLLEAGNHESILRKKVISW

XP_031743831.1 transcription factor bHLH160 [Cucumis sativus]3.8e-2235.78Show/hide
Query:  MALRPWEENTLLDENNEVLERENAAIIPL-CWNNNNN--NNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNI--------------
        M+L PWEE+ L+DE+N + E+EN    PL  W+NNN     I  + QS   KSG+  L L  NEI IGSLVE + LL LE++D++I              
Subjt:  MALRPWEENTLLDENNEVLERENAAIIPL-CWNNNNN--NNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNI--------------

Query:  --INYGKIGGSSNNINEASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS----------------------------------------------
          IN      S++N    +NAKKEEHNA+ER+RR+KLS ++FSLRSLLPNARRS                                              
Subjt:  --INYGKIGGSSNNINEASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS----------------------------------------------

Query:  -----------------------------------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQ-VNRSLLEAGNH
                                                             KA+A+GLRIIGAS VSV    S D   LT HLH+Q ++RSL EA ++
Subjt:  -----------------------------------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQ-VNRSLLEAGNH

Query:  ESILRKKVISWIC
        ES+LRK+VISW+C
Subjt:  ESILRKKVISWIC

XP_038888939.1 transcription factor bHLH160 [Benincasa hispida]2.7e-2034.14Show/hide
Query:  MALRPWEENTLLDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNII--NYGKIGGSS-----
        M+L  WEE  L++ENN + E EN  ++ L  ++ +NNN GE  ++ L ++G+    L S+EI +GSL+EAA LL LE++ + ++     K+  SS     
Subjt:  MALRPWEENTLLDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNII--NYGKIGGSS-----

Query:  --NNINEASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS--------------------------------------------------------
           +I   +NAKKEEHNA+ER+RRM+LS ++FSLRSLLPNARRS                                                        
Subjt:  --NNINEASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS--------------------------------------------------------

Query:  ------------------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQVNRSLLEAGNHESILRKKV
                                            KAQA+GL IIGAS VSV    S D  TL+ HLH+Q++RS+ EA +++SILRKK+
Subjt:  ------------------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQVNRSLLEAGNHESILRKKV

TrEMBL top hitse value%identityAlignment
A0A0A0KGG0 BHLH domain-containing protein3.2e-3552.34Show/hide
Query:  MALRPWEENTLLDENNEVLERENAAIIPL-CWNNNNN--NNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNI--------------
        M+L PWEE+ L+DE+N + E+EN    PL  W+NNN     I  + QS   KSG+  L L  NEI IGSLVE + LL LE++D++I              
Subjt:  MALRPWEENTLLDENNEVLERENAAIIPL-CWNNNNN--NNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNI--------------

Query:  --INYGKIGGSSNNINEASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRSKAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQ-VNRSLLEAGN
          IN      S++N    +NAKKEEHNA+ER+RR+KLS ++FSLRSLLPNARRSKA+A+GLRIIGAS VSV    S D   LT HLH+Q ++RSL EA +
Subjt:  --INYGKIGGSSNNINEASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRSKAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQ-VNRSLLEAGN

Query:  HESILRKKVISWIC
        +ES+LRK+VISW+C
Subjt:  HESILRKKVISWIC

A0A1S3BLZ5 transcription factor bHLH1005.6e-1932.59Show/hide
Query:  MALRPWEENTLLDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNIINYGKIGGSSNNI----
        M+L PWEE+ L+DE+N + E E     PL   N +NNN   E    L KSG+  L L  NEI+  SLVE + LL L++ DN    YG +   ++ +    
Subjt:  MALRPWEENTLLDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNIINYGKIGGSSNNI----

Query:  -----------NEASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS--------------------------------------------------
                   +   NAKKEEHNA+ER+RR++LS ++FSLRSLLPNARRS                                                  
Subjt:  -----------NEASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS--------------------------------------------------

Query:  -----------------------------------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQ-VNRSLLEAGNH
                                                             KA+ +GLRIIGAS VSVS     D   LT HLH+Q ++RSL EA ++
Subjt:  -----------------------------------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQ-VNRSLLEAGNH

Query:  ESILRKKVISWIC
        +SI RK+VISW+C
Subjt:  ESILRKKVISWIC

A0A6J1DXT5 transcription factor bHLH1605.0e-2032.63Show/hide
Query:  MALRPWEENTL-LDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNIINYGKIGGSSNNINEA
        MAL PWEE+ L +D+N   +EREN  + P+   + N NNI E   +H  K+                                              N  
Subjt:  MALRPWEENTL-LDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNIINYGKIGGSSNNINEA

Query:  SNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS----------------------------------------------------------------
        +NAKKEEHNAKERERRMKLSQT+FSLRSLLPN+RRS                                                                
Subjt:  SNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS----------------------------------------------------------------

Query:  ---------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQVNRSLLEAGNHESILRKKVISWI
                                   KA+A+G+ IIGAS VSV    S D PTLTCHLH+Q+N SL E+ ++ES+LRKKVISW+
Subjt:  ---------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQVNRSLLEAGNHESILRKKVISWI

A0A6J1HFM3 transcription factor bHLH1608.0e-1834.25Show/hide
Query:  MALRPWEE-NTLLDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNIINYGKIGGSS------
        MA+ PWE   TL DENN                       GEE Q+ L K G    E    EI  GS+ E AALL LE+D      YG  G  +      
Subjt:  MALRPWEE-NTLLDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNIINYGKIGGSS------

Query:  -NNINEASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS---------------------------------------------------------
         N   E SNAKKEEHNA+ER+RRM+LSQ +FSLRSLLPNARRS                                                         
Subjt:  -NNINEASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS---------------------------------------------------------

Query:  ---------------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQVNRSLLEAGNHESILRKKVISWIC
                                         KA+ +GLRIIGAS V V    S   PTLT HLH Q+++S+ E  +++SILRK+VISW+C
Subjt:  ---------------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQVNRSLLEAGNHESILRKKVISWIC

A0A6J1HVK8 transcription factor bHLH1602.8e-1835.17Show/hide
Query:  MALRPWEE-NTLLDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNIINYGKIGGSSN-----
        MA+ PWE   TL DENN                       GEE ++ L K G    E    E   GS+ E AALL LE+D      YG  G  +      
Subjt:  MALRPWEE-NTLLDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNIINYGKIGGSSN-----

Query:  -NIN-EASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS---------------------------------------------------------
         N N E SNAKKEEHNA+ER+RRM+LSQ +FSLRSLLPNARRS                                                         
Subjt:  -NIN-EASNAKKEEHNAKERERRMKLSQTFFSLRSLLPNARRS---------------------------------------------------------

Query:  ---------------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQVNRSLLEAGNHESILRKKVISW
                                         KA+ DGLRIIGASA+SV    SD  PTLT HLH Q++RS+ E  +++SILRK+VISW
Subjt:  ---------------------------------KAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQVNRSLLEAGNHESILRKKVISW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATTGAGACCATGGGAGGAAAATACATTGTTAGATGAAAATAATGAAGTTCTAGAGAGAGAAAATGCAGCAATAATTCCATTATGTTGGAATAATAATAACAATAA
CAATATTGGTGAAGAAAATCAAAGCCATTTGGTTAAAAGTGGAGATCATCAATTAGAACTATTTTCAAATGAGATAGTAATTGGATCCCTTGTGGAAGCAGCAGCATTAT
TGGAATTGGAAGATGATGATAATAATATTATTAATTATGGAAAAATTGGGGGATCATCCAATAATATTAATGAAGCTTCAAATGCAAAGAAAGAAGAACACAATGCTAAA
GAAAGAGAAAGGAGAATGAAGCTCTCTCAAACTTTCTTCTCACTTCGATCTTTGCTTCCAAATGCTAGACGATCAAAGGCTCAAGCAGATGGCCTTCGAATCATTGGCGC
TTCCGCGGTTTCTGTTTCGGTTCCTTTTTCGGATGATCGTCCAACCCTCACCTGTCATTTGCATCTTCAGGTAAACAGAAGTTTACTAGAAGCAGGCAACCACGAATCAA
TATTAAGAAAAAAGGTAATTTCTTGGATATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATTGAGACCATGGGAGGAAAATACATTGTTAGATGAAAATAATGAAGTTCTAGAGAGAGAAAATGCAGCAATAATTCCATTATGTTGGAATAATAATAACAATAA
CAATATTGGTGAAGAAAATCAAAGCCATTTGGTTAAAAGTGGAGATCATCAATTAGAACTATTTTCAAATGAGATAGTAATTGGATCCCTTGTGGAAGCAGCAGCATTAT
TGGAATTGGAAGATGATGATAATAATATTATTAATTATGGAAAAATTGGGGGATCATCCAATAATATTAATGAAGCTTCAAATGCAAAGAAAGAAGAACACAATGCTAAA
GAAAGAGAAAGGAGAATGAAGCTCTCTCAAACTTTCTTCTCACTTCGATCTTTGCTTCCAAATGCTAGACGATCAAAGGCTCAAGCAGATGGCCTTCGAATCATTGGCGC
TTCCGCGGTTTCTGTTTCGGTTCCTTTTTCGGATGATCGTCCAACCCTCACCTGTCATTTGCATCTTCAGGTAAACAGAAGTTTACTAGAAGCAGGCAACCACGAATCAA
TATTAAGAAAAAAGGTAATTTCTTGGATATGTTGA
Protein sequenceShow/hide protein sequence
MALRPWEENTLLDENNEVLERENAAIIPLCWNNNNNNNIGEENQSHLVKSGDHQLELFSNEIVIGSLVEAAALLELEDDDNNIINYGKIGGSSNNINEASNAKKEEHNAK
ERERRMKLSQTFFSLRSLLPNARRSKAQADGLRIIGASAVSVSVPFSDDRPTLTCHLHLQVNRSLLEAGNHESILRKKVISWIC