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Sed0026439 (gene) of Chayote v1 genome

Gene IDSed0026439
OrganismSechium edule (Chayote v1)
DescriptionBEST Arabidopsis thaliana protein match is: NHL domain-containing protein .
Genome locationLG12:33266055..33266758
RNA-Seq ExpressionSed0026439
SyntenySed0026439
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587852.1 hypothetical protein SDJN03_16417, partial [Cucurbita argyrosperma subsp. sororia]8.2e-4266.67Show/hide
Query:  TQYSPLT-----LPDTDDGVPTNGCGCFRVFGLGSNRSGGYEQ--------VRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQY
        T YSPL      L DTD+ VP+NGC CF++FG G NR+G YE+         R+ E W+V+KLKK+KEVSE V GP+WKNFIRKMGG+LKGKKQRNRFQY
Subjt:  TQYSPLT-----LPDTDDGVPTNGCGCFRVFGLGSNRSGGYEQ--------VRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQY

Query:  DAESYALNF----DGEDDRHPIGFSSRFAVPLPSDEQH
        D ESYALNF    DGEDDR PIGFSSRFAVPL S EQH
Subjt:  DAESYALNF----DGEDDRHPIGFSSRFAVPLPSDEQH

XP_008443900.1 PREDICTED: uncharacterized protein LOC103487383 [Cucumis melo]1.7e-3965.47Show/hide
Query:  TQYSPLT------LPDTDDGVPTNGCGCFRVFGLGSNRSGGYE--------QVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQ
        T YSPL       L D DD + +NGCGCF++FG GSNR+  YE        Q R+ ESW+V+KLKK+KEVSE V GP+WKNFIRKMGG+LKGKKQRNRFQ
Subjt:  TQYSPLT------LPDTDDGVPTNGCGCFRVFGLGSNRSGGYE--------QVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQ

Query:  YDAESYALNFDG-----EDDRH-PIGFSSRFAVPLPSDE
        YD ESYALNFDG     EDD H PIGFSSRFAVPL S E
Subjt:  YDAESYALNFDG-----EDDRH-PIGFSSRFAVPLPSDE

XP_022927019.1 uncharacterized protein LOC111433973 [Cucurbita moschata]1.1e-4165.94Show/hide
Query:  TQYSPLT-----LPDTDDGVPTNGCGCFRVFGLGSNRSGGYEQ--------VRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQY
        T YSPL      L DTD+ +P+NGC CF++FG G NR+G YE+         R+ E W+V+KLKK+KEVSE V GP+WKNFIRKMGG+LKGKKQRNRFQY
Subjt:  TQYSPLT-----LPDTDDGVPTNGCGCFRVFGLGSNRSGGYEQ--------VRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQY

Query:  DAESYALNF----DGEDDRHPIGFSSRFAVPLPSDEQH
        D ESYALNF    DGEDDR PIGFSSRFAVPL S EQH
Subjt:  DAESYALNF----DGEDDRHPIGFSSRFAVPLPSDEQH

XP_023003195.1 uncharacterized protein LOC111496880 [Cucurbita maxima]1.8e-4165.94Show/hide
Query:  TQYSPLT-----LPDTDDGVPTNGCGCFRVFGLGSNRSGGYEQ--------VRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQY
        T YSPL      L DTD+ VP+NGC CF++FG G NR+G YE+         R+ E W+V+KLKK+KEVSE V GP+WKNFIRKMGG+LKG+KQRNRFQY
Subjt:  TQYSPLT-----LPDTDDGVPTNGCGCFRVFGLGSNRSGGYEQ--------VRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQY

Query:  DAESYALNF----DGEDDRHPIGFSSRFAVPLPSDEQH
        D ESYALNF    DGEDDR PIGFSSRFAVPL S EQH
Subjt:  DAESYALNF----DGEDDRHPIGFSSRFAVPLPSDEQH

XP_038876901.1 uncharacterized protein LOC120069255 [Benincasa hispida]9.7e-4367.86Show/hide
Query:  TQYSPLT-----LPDTDDGVPTNGCGCFRVFGLGSNRSGGYE--------QVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQY
        T YSPL      L D D+ VP+NGCGCFR+FG G NR+G YE        Q R+ ESW+VRKLKKMKEVSE V GP+WKNF+RKMGG+LKGKKQRNRFQY
Subjt:  TQYSPLT-----LPDTDDGVPTNGCGCFRVFGLGSNRSGGYE--------QVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQY

Query:  DAESYALNFDG-----EDDRH-PIGFSSRFAVPLPSDEQH
        D ESYALNFDG     ED+ H PIGFSSRFAVPL S EQH
Subjt:  DAESYALNFDG-----EDDRH-PIGFSSRFAVPLPSDEQH

TrEMBL top hitse value%identityAlignment
A0A0A0LTG0 Uncharacterized protein1.8e-3964.49Show/hide
Query:  TQYSPLT-----LPDTDDGVPTNGCGCFRVFGLGSNRSGGYE--------QVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQY
        T YSPLT     L D DD + +NGCGCF++FG GSNR+  YE        Q R+ ESW+V++LKK++EVSE V GP+WKNFIRKMGG+LKGKK+RNRFQY
Subjt:  TQYSPLT-----LPDTDDGVPTNGCGCFRVFGLGSNRSGGYE--------QVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQY

Query:  DAESYALNFDG-----EDDRH-PIGFSSRFAVPLPSDE
        D ESYALNFDG     EDD H PIGFSSRFAVPL S E
Subjt:  DAESYALNFDG-----EDDRH-PIGFSSRFAVPLPSDE

A0A1S3B8N4 uncharacterized protein LOC1034873838.3e-4065.47Show/hide
Query:  TQYSPLT------LPDTDDGVPTNGCGCFRVFGLGSNRSGGYE--------QVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQ
        T YSPL       L D DD + +NGCGCF++FG GSNR+  YE        Q R+ ESW+V+KLKK+KEVSE V GP+WKNFIRKMGG+LKGKKQRNRFQ
Subjt:  TQYSPLT------LPDTDDGVPTNGCGCFRVFGLGSNRSGGYE--------QVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQ

Query:  YDAESYALNFDG-----EDDRH-PIGFSSRFAVPLPSDE
        YD ESYALNFDG     EDD H PIGFSSRFAVPL S E
Subjt:  YDAESYALNFDG-----EDDRH-PIGFSSRFAVPLPSDE

A0A5A7U6Q0 Uncharacterized protein8.3e-4065.47Show/hide
Query:  TQYSPLT------LPDTDDGVPTNGCGCFRVFGLGSNRSGGYE--------QVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQ
        T YSPL       L D DD + +NGCGCF++FG GSNR+  YE        Q R+ ESW+V+KLKK+KEVSE V GP+WKNFIRKMGG+LKGKKQRNRFQ
Subjt:  TQYSPLT------LPDTDDGVPTNGCGCFRVFGLGSNRSGGYE--------QVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQ

Query:  YDAESYALNFDG-----EDDRH-PIGFSSRFAVPLPSDE
        YD ESYALNFDG     EDD H PIGFSSRFAVPL S E
Subjt:  YDAESYALNFDG-----EDDRH-PIGFSSRFAVPLPSDE

A0A6J1EGU0 uncharacterized protein LOC1114339735.2e-4265.94Show/hide
Query:  TQYSPLT-----LPDTDDGVPTNGCGCFRVFGLGSNRSGGYEQ--------VRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQY
        T YSPL      L DTD+ +P+NGC CF++FG G NR+G YE+         R+ E W+V+KLKK+KEVSE V GP+WKNFIRKMGG+LKGKKQRNRFQY
Subjt:  TQYSPLT-----LPDTDDGVPTNGCGCFRVFGLGSNRSGGYEQ--------VRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQY

Query:  DAESYALNF----DGEDDRHPIGFSSRFAVPLPSDEQH
        D ESYALNF    DGEDDR PIGFSSRFAVPL S EQH
Subjt:  DAESYALNF----DGEDDRHPIGFSSRFAVPLPSDEQH

A0A6J1KR34 uncharacterized protein LOC1114968808.8e-4265.94Show/hide
Query:  TQYSPLT-----LPDTDDGVPTNGCGCFRVFGLGSNRSGGYEQ--------VRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQY
        T YSPL      L DTD+ VP+NGC CF++FG G NR+G YE+         R+ E W+V+KLKK+KEVSE V GP+WKNFIRKMGG+LKG+KQRNRFQY
Subjt:  TQYSPLT-----LPDTDDGVPTNGCGCFRVFGLGSNRSGGYEQ--------VRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQY

Query:  DAESYALNF----DGEDDRHPIGFSSRFAVPLPSDEQH
        D ESYALNF    DGEDDR PIGFSSRFAVPL S EQH
Subjt:  DAESYALNF----DGEDDRHPIGFSSRFAVPLPSDEQH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)3.1e-0734.58Show/hide
Query:  EQVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMG----------------GFLKGKKQRNR------FQYDAESYALNFDGE------DDRHPI-GF
        +++   E W +R  ++M+E SE V GPRWK +IR+ G                G   G    NR      F+YD  SY+LNFD        DD  P   +
Subjt:  EQVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMG----------------GFLKGKKQRNR------FQYDAESYALNFDGE------DDRHPI-GF

Query:  SSRFAVP
        S RFA P
Subjt:  SSRFAVP

AT3G48020.1 unknown protein9.1e-0740Show/hide
Query:  WVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKK---QRNRFQYDAESYALNFDGE----DDRHPIG----FSSRFA-VPLPS
        W VR   K++E SE V GPRWK FIR+     +  +     ++F+YD  SY L+F+ E    DD   +G    FS R+A VP+ S
Subjt:  WVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKK---QRNRFQYDAESYALNFDGE----DDRHPIG----FSSRFA-VPLPS

AT5G14890.1 NHL domain-containing protein1.7e-0834.68Show/hide
Query:  GCGCFRVFGLGSNRSGG------------YEQVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMG------GFLKG---KKQRNRFQYDAESYALNFD
        GC CF +  LGS++  G             +++   E W V    KM+E SE V GP+WK FIR+ G      G + G   + +   F+YD+ SY+LNFD
Subjt:  GCGCFRVFGLGSNRSGG------------YEQVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMG------GFLKG---KKQRNRFQYDAESYALNFD

Query:  G-------EDDRHPIGFSSRFAVP
                ED+     +S RFA P
Subjt:  G-------EDDRHPIGFSSRFAVP

AT5G25240.1 unknown protein6.1e-1135.9Show/hide
Query:  LQTQYSPLTLPDTDDGVPTNGCGCFRVFGLGSNRSGGYEQVRDG-----------ESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNR---
        + T    L   D ++     GCG FR F     R G  E    G            +W   KLK +KE+SE + GP+WKNFIR    F  G+K+  R   
Subjt:  LQTQYSPLTLPDTDDGVPTNGCGCFRVFGLGSNRSGGYEQVRDG-----------ESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNR---

Query:  FQYDAESYALNFDGEDD
        F YD ++Y+LNFD   D
Subjt:  FQYDAESYALNFDGEDD

AT5G62865.1 unknown protein1.3e-0839.39Show/hide
Query:  SNRSGGYEQVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQ---RNRFQYDAESYALNFDGEDDRHPI-------GFSSRFA-VPLPS
        SN SG +    D   W +R   K++E SE V GPRWK FIR+     +  +      +FQYD  SY+LNFD +D+            FS+RFA VP+ S
Subjt:  SNRSGGYEQVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQ---RNRFQYDAESYALNFDGEDDRHPI-------GFSSRFA-VPLPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCCTTCAAACCCAATATTCCCCTCTAACCCTTCCGGACACCGACGACGGCGTTCCGACAAACGGGTGCGGGTGCTTTCGGGTATTCGGGTTAGGGTCGAATCG
GAGCGGCGGTTACGAGCAGGTCCGAGATGGGGAATCTTGGGTGGTGAGGAAATTGAAGAAGATGAAGGAGGTTTCTGAGACTGTGGGTGGACCCAGATGGAAGAATTTCA
TTAGAAAAATGGGTGGGTTTTTGAAGGGGAAGAAACAGAGGAATCGGTTTCAGTATGATGCTGAAAGCTATGCTTTGAATTTTGATGGAGAGGATGATCGGCACCCAATT
GGCTTCTCTTCTAGGTTTGCTGTGCCTTTGCCTTCTGATGAACAACATTGA
mRNA sequenceShow/hide mRNA sequence
AGCAAAACCCTCCATTTCTGCGTCATTTCCAATCAATTCCTTTAAATCCATCCATGGCTTCCACAAACCCAAAAACCCATTTCCCCTAAAACCTCAAATCCTTCCCTCCC
ATGGCGGCCCTTCAAACCCAATATTCCCCTCTAACCCTTCCGGACACCGACGACGGCGTTCCGACAAACGGGTGCGGGTGCTTTCGGGTATTCGGGTTAGGGTCGAATCG
GAGCGGCGGTTACGAGCAGGTCCGAGATGGGGAATCTTGGGTGGTGAGGAAATTGAAGAAGATGAAGGAGGTTTCTGAGACTGTGGGTGGACCCAGATGGAAGAATTTCA
TTAGAAAAATGGGTGGGTTTTTGAAGGGGAAGAAACAGAGGAATCGGTTTCAGTATGATGCTGAAAGCTATGCTTTGAATTTTGATGGAGAGGATGATCGGCACCCAATT
GGCTTCTCTTCTAGGTTTGCTGTGCCTTTGCCTTCTGATGAACAACATTGAATTCATTGGTTTATTGATTGAAATTTGGTAATTGTTTGGAATTTGGATTCATTTGTTTA
TATAATGAGTGTATAATTTTCATGTGTTGTTTGTTTGTTGTGGGTATGTGTGGAGAAATTTGGATCTGTTCTTACCATTCCTTCTTTCTTCTTCATAATTGATCTCTTTA
TTAAGAGAATTCATCTTTCCTAGGAACGGATGTGGTTACCTGAC
Protein sequenceShow/hide protein sequence
MAALQTQYSPLTLPDTDDGVPTNGCGCFRVFGLGSNRSGGYEQVRDGESWVVRKLKKMKEVSETVGGPRWKNFIRKMGGFLKGKKQRNRFQYDAESYALNFDGEDDRHPI
GFSSRFAVPLPSDEQH