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Sed0026468 (gene) of Chayote v1 genome

Gene IDSed0026468
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG01:1412773..1413608
RNA-Seq ExpressionSed0026468
SyntenySed0026468
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646853.1 hypothetical protein Csa_020628 [Cucumis sativus]7.5e-0546.51Show/hide
Query:  PWFFRPKLWAVA---FGC--GVIVFCLVW--SCGAVMVVGLLVWFAMLLGAVGVA-------AAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVG
        P +  PK W +     GC  G I+F  V   S  +V+VVG L    M+L AVGVA        A +VTWITVVV L  +GRSRRRLVA    +SKE+MVG
Subjt:  PWFFRPKLWAVA---FGC--GVIVFCLVW--SCGAVMVVGLLVWFAMLLGAVGVA-------AAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVG

Query:  FVVNVLWKEVNVFAVLFWV--GLLGIWLG
        F+V VL KE NV   +     G LG+ +G
Subjt:  FVVNVLWKEVNVFAVLFWV--GLLGIWLG

XP_022947668.1 uncharacterized protein LOC111451463 [Cucurbita moschata]3.0e-1457.66Show/hide
Query:  MAGKIRPWFFRPKLWAVAFGCGVIVFCLV---WSCGAVMVVGLLVWFAMLLGAVGVAAAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVGFVVNV
        M G  +  FFRP+LWA A GCGV+ FCLV     C  V+V GLLV  AM       AAAAVVTWITVVV L  +GRSRRR+VA    +SKEIMVG VV V
Subjt:  MAGKIRPWFFRPKLWAVAFGCGVIVFCLV---WSCGAVMVVGLLVWFAMLLGAVGVAAAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVGFVVNV

Query:  LWKEVNVFAVL
        L KE  V   L
Subjt:  LWKEVNVFAVL

XP_022970724.1 uncharacterized protein LOC111469624 [Cucurbita maxima]2.7e-1556.56Show/hide
Query:  MAGKIRPWFFRPKLWAVAFGCGVIVFCLV---WSCGAVMVVGLLVWFAMLLGAVGVAAAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVGFVVNV
        M G  +  FFRP+LWA A GCGV+ FCLV     C  V+V GLLV  AM       AAAAVVTWITVVVLL  +GRSRRR+VA    +SKEIMVG VV V
Subjt:  MAGKIRPWFFRPKLWAVAFGCGVIVFCLV---WSCGAVMVVGLLVWFAMLLGAVGVAAAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVGFVVNV

Query:  LWKEVNVFAVLFWVGLLGIWLG
        L KE  V       GL G  LG
Subjt:  LWKEVNVFAVLFWVGLLGIWLG

XP_023534045.1 uncharacterized protein LOC111795714 [Cucurbita pepo subsp. pepo]3.4e-1354.1Show/hide
Query:  MAGKIRPWFFRPKLWAVAFGCGVIVFCLV---WSCGAVMVVGLLVWFAMLLGAVGVAAAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVGFVVNV
        M G  +  FF P+LWA A GCGV+ FCLV     C  V+V GLLV  AM       AAAAVVTWITVVV L  +GRSR+R+VA    +SKEIMVG VV V
Subjt:  MAGKIRPWFFRPKLWAVAFGCGVIVFCLV---WSCGAVMVVGLLVWFAMLLGAVGVAAAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVGFVVNV

Query:  LWKEVNVFAVLFWVGLLGIWLG
        L KE  V       GL G  LG
Subjt:  LWKEVNVFAVLFWVGLLGIWLG

XP_038902352.1 uncharacterized protein LOC120088986 [Benincasa hispida]5.5e-0849.07Show/hide
Query:  RPKLWAVAF-----GCGVIVFCLVWSCGA-----VMVVGLLVWFAMLLGAVGVAAAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVGFVVNVLWK
        RPKLW +A        G I+F LV   G+     V+++G L+  A+ +  V  AA A+VTWITV+VLL+ +GR+RRRLVA    +SKEIMVGFVV VL K
Subjt:  RPKLWAVAF-----GCGVIVFCLVWSCGA-----VMVVGLLVWFAMLLGAVGVAAAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVGFVVNVLWK

Query:  EVNVFAVL
        E NV   +
Subjt:  EVNVFAVL

TrEMBL top hitse value%identityAlignment
A0A0A0KE95 Uncharacterized protein3.6e-0546.51Show/hide
Query:  PWFFRPKLWAVA---FGC--GVIVFCLVW--SCGAVMVVGLLVWFAMLLGAVGVA-------AAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVG
        P +  PK W +     GC  G I+F  V   S  +V+VVG L    M+L AVGVA        A +VTWITVVV L  +GRSRRRLVA    +SKE+MVG
Subjt:  PWFFRPKLWAVA---FGC--GVIVFCLVW--SCGAVMVVGLLVWFAMLLGAVGVA-------AAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVG

Query:  FVVNVLWKEVNVFAVLFWV--GLLGIWLG
        F+V VL KE NV   +     G LG+ +G
Subjt:  FVVNVLWKEVNVFAVLFWV--GLLGIWLG

A0A6J1G791 uncharacterized protein LOC1114514631.5e-1457.66Show/hide
Query:  MAGKIRPWFFRPKLWAVAFGCGVIVFCLV---WSCGAVMVVGLLVWFAMLLGAVGVAAAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVGFVVNV
        M G  +  FFRP+LWA A GCGV+ FCLV     C  V+V GLLV  AM       AAAAVVTWITVVV L  +GRSRRR+VA    +SKEIMVG VV V
Subjt:  MAGKIRPWFFRPKLWAVAFGCGVIVFCLV---WSCGAVMVVGLLVWFAMLLGAVGVAAAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVGFVVNV

Query:  LWKEVNVFAVL
        L KE  V   L
Subjt:  LWKEVNVFAVL

A0A6J1I6G7 uncharacterized protein LOC1114696241.3e-1556.56Show/hide
Query:  MAGKIRPWFFRPKLWAVAFGCGVIVFCLV---WSCGAVMVVGLLVWFAMLLGAVGVAAAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVGFVVNV
        M G  +  FFRP+LWA A GCGV+ FCLV     C  V+V GLLV  AM       AAAAVVTWITVVVLL  +GRSRRR+VA    +SKEIMVG VV V
Subjt:  MAGKIRPWFFRPKLWAVAFGCGVIVFCLV---WSCGAVMVVGLLVWFAMLLGAVGVAAAAVVTWITVVVLLAFVGRSRRRLVA----MSKEIMVGFVVNV

Query:  LWKEVNVFAVLFWVGLLGIWLG
        L KE  V       GL G  LG
Subjt:  LWKEVNVFAVLFWVGLLGIWLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G03600.1 unknown protein4.0e-0449.32Show/hide
Query:  AVMVVGLLVWFAMLLGAVGVAAAAV-VTWITVVVLLAFVGRSRRRLVAMSKEI---MVGFVVNVLWKEVNVFA
        A +V+G +     ++ A+ VA  AV V WI+VVVLLAF G+SRR LV   ++I   +VGFV  VL KE NV A
Subjt:  AVMVVGLLVWFAMLLGAVGVAAAAV-VTWITVVVLLAFVGRSRRRLVAMSKEI---MVGFVVNVLWKEVNVFA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCAGGCAAAATCCGACCGTGGTTTTTTAGACCAAAGTTGTGGGCAGTGGCGTTTGGATGCGGAGTAATTGTTTTTTGTTTGGTTTGGAGTTGCGGTGCGGTTAT
GGTGGTTGGGTTGTTGGTTTGGTTCGCGATGTTGTTGGGTGCGGTAGGGGTGGCTGCTGCGGCGGTGGTGACGTGGATCACGGTGGTGGTGTTGCTGGCGTTTGTTGGGA
GGTCGAGGAGGAGGTTGGTGGCGATGAGTAAAGAGATAATGGTGGGGTTTGTGGTCAACGTTTTGTGGAAGGAAGTCAACGTTTTTGCCGTGCTGTTTTGGGTTGGATTG
CTTGGCATTTGGCTTGGGGTTCAATAA
mRNA sequenceShow/hide mRNA sequence
CAGTATTCACTTTACAATTTCATATACCCACTTCCAAATTTCCCCTTCCCCAATTACATTAAAAAAAAAAAAAAAACCCAAAAATAAGAAAAACAATTTCTTGCCTCCTA
TATGAAAAAGATTTATAATTTAAGTGCTTTCTAGCCGTCTGAAATTTTATCGATGATGGCAGGCAAAATCCGACCGTGGTTTTTTAGACCAAAGTTGTGGGCAGTGGCGT
TTGGATGCGGAGTAATTGTTTTTTGTTTGGTTTGGAGTTGCGGTGCGGTTATGGTGGTTGGGTTGTTGGTTTGGTTCGCGATGTTGTTGGGTGCGGTAGGGGTGGCTGCT
GCGGCGGTGGTGACGTGGATCACGGTGGTGGTGTTGCTGGCGTTTGTTGGGAGGTCGAGGAGGAGGTTGGTGGCGATGAGTAAAGAGATAATGGTGGGGTTTGTGGTCAA
CGTTTTGTGGAAGGAAGTCAACGTTTTTGCCGTGCTGTTTTGGGTTGGATTGCTTGGCATTTGGCTTGGGGTTCAATAATTCCGGTCTGTTTTGGTTTTTTTTGAGATGG
GAAAATGGAATGGGATTGGCTAACGGTTCAACTTTTGTTGGCGTTTGTGGTCCATTAGATCGATAAGTTTACTATTCTCTATCATCTCTATCATTTTTAGGAATTATTGG
AGTTGGCTGCCACAAATTGATCTCTTTTTTTAAAAATAATTCTTAGTAGAGATTTGAAGTCTAGGTATATTCTTATTTTTGAAGTTATTGGGGTGTCATCTTTTCTTCTT
CTAATATCTTCTTAGATTTTAGTGTGCTTAAACTTTATTATTTTGATGATTAGTTGAAGTAGCGAC
Protein sequenceShow/hide protein sequence
MMAGKIRPWFFRPKLWAVAFGCGVIVFCLVWSCGAVMVVGLLVWFAMLLGAVGVAAAAVVTWITVVVLLAFVGRSRRRLVAMSKEIMVGFVVNVLWKEVNVFAVLFWVGL
LGIWLGVQ