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Sed0026507 (gene) of Chayote v1 genome

Gene IDSed0026507
OrganismSechium edule (Chayote v1)
Descriptionneurofilament medium polypeptide-like
Genome locationLG13:3500621..3501841
RNA-Seq ExpressionSed0026507
SyntenySed0026507
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149261.1 neurofilament medium polypeptide-like [Momordica charantia]1.8e-0539.09Show/hide
Query:  MGSCASKPKGNQKEVIPVPGPAPILVVEKSLKKAMT-TEVK------EVKVENEEKKNDVIVEKKVEEDEKKVEEENQSHLHGNLLIEGKAKKEAIEDKE
        MG CASKPK +    +PVP P  + V  +SLK   T  EV       EV V  E+K +D + EKKV+E EKKVEE NQ H  G+LL+E +AKKEA+  K+
Subjt:  MGSCASKPKGNQKEVIPVPGPAPILVVEKSLKKAMT-TEVK------EVKVENEEKKNDVIVEKKVEEDEKKVEEENQSHLHGNLLIEGKAKKEAIEDKE

Query:  VVEVSTKTKEEDPKVEAKVEVPKELEEVVKVEEVPRETIKEEPKE----EIKKVEEFVSTQTKKDEPKEDVKKVEELASTQTMKEEVKKVEEIASTQ
         VEV   T   +PK EAKVE  K +E               EPK+    E     + ++T      PK+ +  VE  A+ Q    ++  VE  A+ Q
Subjt:  VVEVSTKTKEEDPKVEAKVEVPKELEEVVKVEEVPRETIKEEPKE----EIKKVEEFVSTQTKKDEPKEDVKKVEELASTQTMKEEVKKVEEIASTQ

XP_028532136.1 conserved Plasmodium protein, unknown function [Plasmodium relictum]7.0e-0537.92Show/hide
Query:  KSLKKAMTTEVKEVKVENEEKKNDVIVEKKVEEDEKKVEE-ENQSHLHGNLLIEGKAKKEAIEDKEVVEVSTKTKEEDPKVEAKVEVPKELEEVVKVEEV
        K +KK  T E+KEVK E EEKK    V+++V+++E KVEE + +  +   +  E K KKE I++   V+   +TK+E+ K   + E  KE  + VK EE 
Subjt:  KSLKKAMTTEVKEVKVENEEKKNDVIVEKKVEEDEKKVEE-ENQSHLHGNLLIEGKAKKEAIEDKEVVEVSTKTKEEDPKVEAKVEVPKELEEVVKVEEV

Query:  PRETIKEEPKEEIKK--VEEFVSTQTKKDEPK----EDVKK--VEELASTQTMKEEVKKVEEIASTQTMKEEVKKVEELVSTQTMKEEVKKV-EEIVSTQ
         +E IKE  +EE KK  ++E    + KK+E K    E++KK  ++E+   +T KEE+K   E+   +T KEE+K+V+E    +T KEE+K+V EE    +
Subjt:  PRETIKEEPKEEIKK--VEEFVSTQTKKDEPK----EDVKK--VEELASTQTMKEEVKKVEEIASTQTMKEEVKKVEELVSTQTMKEEVKKV-EEIVSTQ

Query:  TNKEEPKEEAKK--VEALLSTQTKEEELNQAKVEAAKPVE
          KE  +EE KK  ++ +   +TK+EE+ + K E  K  E
Subjt:  TNKEEPKEEAKK--VEALLSTQTKEEELNQAKVEAAKPVE

XP_042215736.1 titin-like isoform X3 [Homarus americanus]7.7e-0435.9Show/hide
Query:  SLKKAMTTEVKEVK------VENEEKKNDVIVEKKVEEDEKKVEEENQSHLHGNLLIEGKAKKEAI--EDKEVVEV-STKTKEEDPKVEAKV-EVPKE--
        +L+K +  EVK+V+       E EE   +V   +++ E+ KKVEE           I  + KKE I  E K+V E+   K  EE PK   KV E+PKE  
Subjt:  SLKKAMTTEVKEVK------VENEEKKNDVIVEKKVEEDEKKVEEENQSHLHGNLLIEGKAKKEAI--EDKEVVEV-STKTKEEDPKVEAKV-EVPKE--

Query:  ------LEEVVKVEEVPRETIKEEPKEEIKKVEEFVSTQTKKDEPKEDVKKVEELASTQTMKEEVKKVEEIASTQTMKEEVKKVEELVSTQTMKEEVKKV
               EEV KVEE+P+E  KEE  +E+KKVEE    + KK E   +VKKVEE+    T  EE+ K EEI + + + EEVKKVEE+       +EVKKV
Subjt:  ------LEEVVKVEEVPRETIKEEPKEEIKKVEEFVSTQTKKDEPKEDVKKVEELASTQTMKEEVKKVEEIASTQTMKEEVKKVEELVSTQTMKEEVKKV

Query:  EEIVSTQTNKEEPKEEAKKVEALLSTQTKEEELNQAKVEAAKPVEPASTMATI----VTSTESKVVEDKKTIDEVTVAEPNKAPIEAPIEAKTIIEVPAV
        EEI      ++E  EE KKVE +L    K +E+++ + +  +  +    +  I    + + E +VVE+ K  +E  + +  K   E P + K I E+P  
Subjt:  EEIVSTQTNKEEPKEEAKKVEALLSTQTKEEELNQAKVEAAKPVEPASTMATI----VTSTESKVVEDKKTIDEVTVAEPNKAPIEAPIEAKTIIEVPAV

Query:  AMAVATVTEPEQ
           V  + + E+
Subjt:  AMAVATVTEPEQ

XP_042215758.1 titin-like isoform X24 [Homarus americanus]7.7e-0435.9Show/hide
Query:  SLKKAMTTEVKEVK------VENEEKKNDVIVEKKVEEDEKKVEEENQSHLHGNLLIEGKAKKEAI--EDKEVVEV-STKTKEEDPKVEAKV-EVPKE--
        +L+K +  EVK+V+       E EE   +V   +++ E+ KKVEE           I  + KKE I  E K+V E+   K  EE PK   KV E+PKE  
Subjt:  SLKKAMTTEVKEVK------VENEEKKNDVIVEKKVEEDEKKVEEENQSHLHGNLLIEGKAKKEAI--EDKEVVEV-STKTKEEDPKVEAKV-EVPKE--

Query:  ------LEEVVKVEEVPRETIKEEPKEEIKKVEEFVSTQTKKDEPKEDVKKVEELASTQTMKEEVKKVEEIASTQTMKEEVKKVEELVSTQTMKEEVKKV
               EEV KVEE+P+E  KEE  +E+KKVEE    + KK E   +VKKVEE+    T  EE+ K EEI + + + EEVKKVEE+       +EVKKV
Subjt:  ------LEEVVKVEEVPRETIKEEPKEEIKKVEEFVSTQTKKDEPKEDVKKVEELASTQTMKEEVKKVEEIASTQTMKEEVKKVEELVSTQTMKEEVKKV

Query:  EEIVSTQTNKEEPKEEAKKVEALLSTQTKEEELNQAKVEAAKPVEPASTMATI----VTSTESKVVEDKKTIDEVTVAEPNKAPIEAPIEAKTIIEVPAV
        EEI      ++E  EE KKVE +L    K +E+++ + +  +  +    +  I    + + E +VVE+ K  +E  + +  K   E P + K I E+P  
Subjt:  EEIVSTQTNKEEPKEEAKKVEALLSTQTKEEELNQAKVEAAKPVEPASTMATI----VTSTESKVVEDKKTIDEVTVAEPNKAPIEAPIEAKTIIEVPAV

Query:  AMAVATVTEPEQ
           V  + + E+
Subjt:  AMAVATVTEPEQ

XP_042215788.1 titin-like isoform X50 [Homarus americanus]7.7e-0435.9Show/hide
Query:  SLKKAMTTEVKEVK------VENEEKKNDVIVEKKVEEDEKKVEEENQSHLHGNLLIEGKAKKEAI--EDKEVVEV-STKTKEEDPKVEAKV-EVPKE--
        +L+K +  EVK+V+       E EE   +V   +++ E+ KKVEE           I  + KKE I  E K+V E+   K  EE PK   KV E+PKE  
Subjt:  SLKKAMTTEVKEVK------VENEEKKNDVIVEKKVEEDEKKVEEENQSHLHGNLLIEGKAKKEAI--EDKEVVEV-STKTKEEDPKVEAKV-EVPKE--

Query:  ------LEEVVKVEEVPRETIKEEPKEEIKKVEEFVSTQTKKDEPKEDVKKVEELASTQTMKEEVKKVEEIASTQTMKEEVKKVEELVSTQTMKEEVKKV
               EEV KVEE+P+E  KEE  +E+KKVEE    + KK E   +VKKVEE+    T  EE+ K EEI + + + EEVKKVEE+       +EVKKV
Subjt:  ------LEEVVKVEEVPRETIKEEPKEEIKKVEEFVSTQTKKDEPKEDVKKVEELASTQTMKEEVKKVEEIASTQTMKEEVKKVEELVSTQTMKEEVKKV

Query:  EEIVSTQTNKEEPKEEAKKVEALLSTQTKEEELNQAKVEAAKPVEPASTMATI----VTSTESKVVEDKKTIDEVTVAEPNKAPIEAPIEAKTIIEVPAV
        EEI      ++E  EE KKVE +L    K +E+++ + +  +  +    +  I    + + E +VVE+ K  +E  + +  K   E P + K I E+P  
Subjt:  EEIVSTQTNKEEPKEEAKKVEALLSTQTKEEELNQAKVEAAKPVEPASTMATI----VTSTESKVVEDKKTIDEVTVAEPNKAPIEAPIEAKTIIEVPAV

Query:  AMAVATVTEPEQ
           V  + + E+
Subjt:  AMAVATVTEPEQ

TrEMBL top hitse value%identityAlignment
A0A1J1H3J9 Uncharacterized protein3.4e-0537.92Show/hide
Query:  KSLKKAMTTEVKEVKVENEEKKNDVIVEKKVEEDEKKVEE-ENQSHLHGNLLIEGKAKKEAIEDKEVVEVSTKTKEEDPKVEAKVEVPKELEEVVKVEEV
        K +KK  T E+KEVK E EEKK    V+++V+++E KVEE + +  +   +  E K KKE I++   V+   +TK+E+ K   + E  KE  + VK EE 
Subjt:  KSLKKAMTTEVKEVKVENEEKKNDVIVEKKVEEDEKKVEE-ENQSHLHGNLLIEGKAKKEAIEDKEVVEVSTKTKEEDPKVEAKVEVPKELEEVVKVEEV

Query:  PRETIKEEPKEEIKK--VEEFVSTQTKKDEPK----EDVKK--VEELASTQTMKEEVKKVEEIASTQTMKEEVKKVEELVSTQTMKEEVKKV-EEIVSTQ
         +E IKE  +EE KK  ++E    + KK+E K    E++KK  ++E+   +T KEE+K   E+   +T KEE+K+V+E    +T KEE+K+V EE    +
Subjt:  PRETIKEEPKEEIKK--VEEFVSTQTKKDEPK----EDVKK--VEELASTQTMKEEVKKVEEIASTQTMKEEVKKVEELVSTQTMKEEVKKV-EEIVSTQ

Query:  TNKEEPKEEAKK--VEALLSTQTKEEELNQAKVEAAKPVE
          KE  +EE KK  ++ +   +TK+EE+ + K E  K  E
Subjt:  TNKEEPKEEAKK--VEALLSTQTKEEELNQAKVEAAKPVE

A0A1Y2E9C3 Protein kinase domain-containing protein3.7e-0437.26Show/hide
Query:  VEKSLKKAMTTEVKEVKVENEEKKNDVIVEKKVEEDEKKVEEENQSHLHGNLLIEGKAKKEAIEDKEV----VEVSTKTKEEDPKVEAKV--EVPKELEE
        VE+  KK    +V++  VE   K+ + +VE++V E+  K EEE ++      + E   K+E  E+K+V    VE   K +EE+ KVE  +  E+PK+ EE
Subjt:  VEKSLKKAMTTEVKEVKVENEEKKNDVIVEKKVEEDEKKVEEENQSHLHGNLLIEGKAKKEAIEDKEV----VEVSTKTKEEDPKVEAKV--EVPKELEE

Query:  VVKVEEVPRETIKEEPKEEIKKVEEFVSTQTKKDEPKEDVKKVEELASTQTMKEEV--KKVEEIASTQTMKEEV---KKVEELVSTQTMKEEV--KKVEE
          KVEE+  E I ++ +EE KKVEE V  +  K E +E+ K VEE    +  KEEV  KKVEE+   +T KEE    KKVEE+V  +T KEE   KKVEE
Subjt:  VVKVEEVPRETIKEEPKEEIKKVEEFVSTQTKKDEPKEDVKKVEELASTQTMKEEV--KKVEEIASTQTMKEEV---KKVEELVSTQTMKEEV--KKVEE

Query:  IVSTQTNKEEPKEEAKKVEALLSTQTKEEELNQAKVEAAKPVE-PASTMATIVTSTESKVVEDKKTIDEVTVAEPNK--------APIEAPIEAKTIIEV
        IV  +T KEE +E  K  E ++    KEEE    KVE     E P           +S   + K+TI ++   E +K        + IE  +EA  I  +
Subjt:  IVSTQTNKEEPKEEAKKVEALLSTQTKEEELNQAKVEAAKPVE-PASTMATIVTSTESKVVEDKKTIDEVTVAEPNK--------APIEAPIEAKTIIEV

Query:  PAVAMAVATVTEPE
             +VAT +  E
Subjt:  PAVAMAVATVTEPE

A0A6J1D7V2 neurofilament medium polypeptide-like8.9e-0639.09Show/hide
Query:  MGSCASKPKGNQKEVIPVPGPAPILVVEKSLKKAMT-TEVK------EVKVENEEKKNDVIVEKKVEEDEKKVEEENQSHLHGNLLIEGKAKKEAIEDKE
        MG CASKPK +    +PVP P  + V  +SLK   T  EV       EV V  E+K +D + EKKV+E EKKVEE NQ H  G+LL+E +AKKEA+  K+
Subjt:  MGSCASKPKGNQKEVIPVPGPAPILVVEKSLKKAMT-TEVK------EVKVENEEKKNDVIVEKKVEEDEKKVEEENQSHLHGNLLIEGKAKKEAIEDKE

Query:  VVEVSTKTKEEDPKVEAKVEVPKELEEVVKVEEVPRETIKEEPKE----EIKKVEEFVSTQTKKDEPKEDVKKVEELASTQTMKEEVKKVEEIASTQ
         VEV   T   +PK EAKVE  K +E               EPK+    E     + ++T      PK+ +  VE  A+ Q    ++  VE  A+ Q
Subjt:  VVEVSTKTKEEDPKVEAKVEVPKELEEVVKVEEVPRETIKEEPKE----EIKKVEEFVSTQTKKDEPKEDVKKVEELASTQTMKEEVKKVEEIASTQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTTGTGCTAGCAAGCCAAAGGGCAACCAGAAAGAAGTCATCCCCGTCCCTGGCCCTGCCCCGATCCTTGTCGTCGAGAAGTCCTTGAAGAAGGCGATGACGAC
CGAGGTGAAAGAAGTCAAGGTCGAAAATGAAGAAAAAAAGAATGATGTGATAGTTGAGAAGAAGGTTGAGGAGGATGAGAAGAAGGTTGAGGAGGAAAATCAATCTCATC
TCCATGGAAATTTGCTCATTGAGGGAAAAGCAAAGAAAGAAGCAATTGAGGACAAAGAGGTAGTAGAAGTTTCAACAAAAACCAAAGAAGAAGATCCTAAGGTAGAAGCA
AAGGTTGAAGTTCCAAAAGAGCTTGAAGAAGTAGTCAAGGTTGAAGAAGTTCCAAGAGAGACCATAAAAGAGGAGCCTAAAGAAGAAATCAAGAAGGTTGAAGAATTTGT
TTCAACACAAACTAAAAAGGATGAGCCTAAAGAAGATGTCAAGAAGGTTGAAGAATTAGCTTCAACTCAAACTATGAAAGAAGAAGTCAAGAAGGTTGAAGAAATAGCTT
CAACACAAACTATGAAAGAAGAAGTCAAGAAGGTTGAAGAATTAGTTTCAACACAGACTATGAAAGAAGAAGTCAAGAAGGTTGAAGAAATAGTTTCAACTCAAACCAAC
AAAGAAGAGCCTAAAGAAGAAGCCAAGAAGGTTGAAGCATTACTTTCAACACAAACTAAAGAAGAAGAGCTCAATCAAGCCAAGGTTGAAGCAGCGAAACCGGTAGAACC
AGCCTCGACAATGGCCACCATCGTCACGTCCACTGAATCTAAGGTGGTCGAAGACAAGAAAACCATTGATGAAGTAACAGTGGCGGAACCTAATAAAGCCCCTATCGAGG
CACCAATAGAGGCAAAAACCATCATCGAGGTACCCGCGGTGGCTATGGCCGTGGCGACAGTGACAGAACCAGAGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTTGTGCTAGCAAGCCAAAGGGCAACCAGAAAGAAGTCATCCCCGTCCCTGGCCCTGCCCCGATCCTTGTCGTCGAGAAGTCCTTGAAGAAGGCGATGACGAC
CGAGGTGAAAGAAGTCAAGGTCGAAAATGAAGAAAAAAAGAATGATGTGATAGTTGAGAAGAAGGTTGAGGAGGATGAGAAGAAGGTTGAGGAGGAAAATCAATCTCATC
TCCATGGAAATTTGCTCATTGAGGGAAAAGCAAAGAAAGAAGCAATTGAGGACAAAGAGGTAGTAGAAGTTTCAACAAAAACCAAAGAAGAAGATCCTAAGGTAGAAGCA
AAGGTTGAAGTTCCAAAAGAGCTTGAAGAAGTAGTCAAGGTTGAAGAAGTTCCAAGAGAGACCATAAAAGAGGAGCCTAAAGAAGAAATCAAGAAGGTTGAAGAATTTGT
TTCAACACAAACTAAAAAGGATGAGCCTAAAGAAGATGTCAAGAAGGTTGAAGAATTAGCTTCAACTCAAACTATGAAAGAAGAAGTCAAGAAGGTTGAAGAAATAGCTT
CAACACAAACTATGAAAGAAGAAGTCAAGAAGGTTGAAGAATTAGTTTCAACACAGACTATGAAAGAAGAAGTCAAGAAGGTTGAAGAAATAGTTTCAACTCAAACCAAC
AAAGAAGAGCCTAAAGAAGAAGCCAAGAAGGTTGAAGCATTACTTTCAACACAAACTAAAGAAGAAGAGCTCAATCAAGCCAAGGTTGAAGCAGCGAAACCGGTAGAACC
AGCCTCGACAATGGCCACCATCGTCACGTCCACTGAATCTAAGGTGGTCGAAGACAAGAAAACCATTGATGAAGTAACAGTGGCGGAACCTAATAAAGCCCCTATCGAGG
CACCAATAGAGGCAAAAACCATCATCGAGGTACCCGCGGTGGCTATGGCCGTGGCGACAGTGACAGAACCAGAGCAATAG
Protein sequenceShow/hide protein sequence
MGSCASKPKGNQKEVIPVPGPAPILVVEKSLKKAMTTEVKEVKVENEEKKNDVIVEKKVEEDEKKVEEENQSHLHGNLLIEGKAKKEAIEDKEVVEVSTKTKEEDPKVEA
KVEVPKELEEVVKVEEVPRETIKEEPKEEIKKVEEFVSTQTKKDEPKEDVKKVEELASTQTMKEEVKKVEEIASTQTMKEEVKKVEELVSTQTMKEEVKKVEEIVSTQTN
KEEPKEEAKKVEALLSTQTKEEELNQAKVEAAKPVEPASTMATIVTSTESKVVEDKKTIDEVTVAEPNKAPIEAPIEAKTIIEVPAVAMAVATVTEPEQ