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Sed0026538 (gene) of Chayote v1 genome

Gene IDSed0026538
OrganismSechium edule (Chayote v1)
DescriptionGibberellin-regulated protein 2
Genome locationLG11:26467504..26468286
RNA-Seq ExpressionSed0026538
SyntenySed0026538
Gene Ontology termsNA
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008444802.1 PREDICTED: snakin-2-like [Cucumis melo]2.3e-3679.59Show/hide
Query:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        MSI  KA  ASLLLSLLFLH VES+   G+ P++  KMDC GAC  RC LSSRPRLCNRACGTCC RCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Subjt:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

XP_022951559.1 snakin-2-like [Cucurbita moschata]5.2e-3677.55Show/hide
Query:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M+I  KA IASLLLSLLFLHSVES   A ++P +  KMDCGGAC  RC+LSSRPRLC+RACGTCC RCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Subjt:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

XP_023002563.1 snakin-2-like [Cucurbita maxima]3.1e-3678.57Show/hide
Query:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M+I  KA IASLLLSLLFLHSVES   A ++P +  KMDCGGAC  RC+LSSRPRLC+RACGTCC RCNCVPPGTSGNHHLCPCYA++TTHGGRLKCP
Subjt:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

XP_038886088.1 snakin-2-like isoform X1 [Benincasa hispida]4.0e-3677.78Show/hide
Query:  MSIFFKAFIASLLLSLLFLHSVE-STEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        MS F KA IASL LSLLFLHSV+  +   G+ P +  KMDCGGAC  RC+LSSR RLCNRACGTCC RCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Subjt:  MSIFFKAFIASLLLSLLFLHSVE-STEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

XP_038886089.1 snakin-2-like isoform X2 [Benincasa hispida]6.2e-3780.61Show/hide
Query:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        MS F KA IASL LSLLFLHSVES    G+ P +  KMDCGGAC  RC+LSSR RLCNRACGTCC RCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Subjt:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

TrEMBL top hitse value%identityAlignment
A0A0A0LNS5 Uncharacterized protein4.8e-3577.55Show/hide
Query:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M I  K   ASLLLSLLFLH VES    G+ P N  +MDC GAC  RC LSSRPRLCNRACGTCC RCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Subjt:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

A0A1S3BBY7 snakin-2-like1.1e-3679.59Show/hide
Query:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        MSI  KA  ASLLLSLLFLH VES+   G+ P++  KMDC GAC  RC LSSRPRLCNRACGTCC RCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Subjt:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

A0A6J1CRW3 snakin-2-like1.1e-3470.64Show/hide
Query:  MSIFFKAFIAS--LLLSLLFLHS---------VESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMT
        MS+F K  I +  LL SLLFLH+         VES + AGI+P    KMDCGGAC  RC+LSSRPRLCNRACGTCC RCNCVPPGTSGNHHLCPCYAAMT
Subjt:  MSIFFKAFIAS--LLLSLLFLHS---------VESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMT

Query:  THGGRLKCP
        THGGR KCP
Subjt:  THGGRLKCP

A0A6J1GJ50 snakin-2-like2.5e-3677.55Show/hide
Query:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M+I  KA IASLLLSLLFLHSVES   A ++P +  KMDCGGAC  RC+LSSRPRLC+RACGTCC RCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Subjt:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

A0A6J1KTY1 snakin-2-like1.5e-3678.57Show/hide
Query:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M+I  KA IASLLLSLLFLHSVES   A ++P +  KMDCGGAC  RC+LSSRPRLC+RACGTCC RCNCVPPGTSGNHHLCPCYA++TTHGGRLKCP
Subjt:  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

SwissProt top hitse value%identityAlignment
F4IQJ4 Gibberellin-regulated protein 112.1e-2759.57Show/hide
Query:  FKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        F+  +ASLL+SLL L  V +     +   ++PK+DC   C ERC LSSRP LC+RACGTCC RCNCV PGTSGN+  CPCY ++TTHGGR KCP
Subjt:  FKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

P46687 Gibberellin-regulated protein 39.6e-2556Show/hide
Query:  MSIFFKAFIASLLLSLL--FLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M+IF    +  L+L  L  F   V + E + +  +   K+DCGG C  RC  SSRP LC RAC +CC RCNCVPPGT+GNHHLCPCYA++TT GGRLKCP
Subjt:  MSIFFKAFIASLLLSLL--FLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

P46688 Gibberellin-regulated protein 24.8e-2453Show/hide
Query:  MSIFFKAFIASLLLSLLFLHS--VESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M++F    +  L++  L  +   V + + A +  +   K+DCGG C +RC  SSR +LC RAC +CC RCNCVPPGTSGN HLCPCYA++TTHGGRLKCP
Subjt:  MSIFFKAFIASLLLSLLFLHS--VESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

P46689 Gibberellin-regulated protein 14.2e-2862.77Show/hide
Query:  KAFIASLLLSLLFLHSVES-TEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        KA IASLL+SLL L  V++  E +      + K+DCG AC+ RC+LS RPRLC+RACGTCC RCNCVPPGT GN+  C CYA++TTHGGR KCP
Subjt:  KAFIASLLLSLLFLHSVES-TEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

Q93X17 Snakin-25.8e-3062Show/hide
Query:  KAFIASLLLSLLFLHSVESTEPAGINPQ-------NSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        KA  ASLLLSLL L  V+S +   +          +  K+DCGGAC  RC+LSSRPRLCNRACGTCC RCNCVPPGTSGN   CPCYA++TTHG + KCP
Subjt:  KAFIASLLLSLLFLHSVESTEPAGINPQ-------NSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

Arabidopsis top hitse value%identityAlignment
AT1G75750.1 GAST1 protein homolog 13.0e-2962.77Show/hide
Query:  KAFIASLLLSLLFLHSVES-TEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        KA IASLL+SLL L  V++  E +      + K+DCG AC+ RC+LS RPRLC+RACGTCC RCNCVPPGT GN+  C CYA++TTHGGR KCP
Subjt:  KAFIASLLLSLLFLHSVES-TEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

AT1G75750.2 GAST1 protein homolog 11.6e-3063.44Show/hide
Query:  KAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        KA IASLL+SLL L  V++ E +      + K+DCG AC+ RC+LS RPRLC+RACGTCC RCNCVPPGT GN+  C CYA++TTHGGR KCP
Subjt:  KAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

AT2G18420.1 Gibberellin-regulated family protein1.5e-2859.57Show/hide
Query:  FKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        F+  +ASLL+SLL L  V +     +   ++PK+DC   C ERC LSSRP LC+RACGTCC RCNCV PGTSGN+  CPCY ++TTHGGR KCP
Subjt:  FKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

AT4G09600.1 GAST1 protein homolog 36.8e-2656Show/hide
Query:  MSIFFKAFIASLLLSLL--FLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M+IF    +  L+L  L  F   V + E + +  +   K+DCGG C  RC  SSRP LC RAC +CC RCNCVPPGT+GNHHLCPCYA++TT GGRLKCP
Subjt:  MSIFFKAFIASLLLSLL--FLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

AT4G09610.1 GAST1 protein homolog 23.4e-2553Show/hide
Query:  MSIFFKAFIASLLLSLLFLHS--VESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
        M++F    +  L++  L  +   V + + A +  +   K+DCGG C +RC  SSR +LC RAC +CC RCNCVPPGTSGN HLCPCYA++TTHGGRLKCP
Subjt:  MSIFFKAFIASLLLSLLFLHS--VESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAATCTTCTTCAAAGCTTTCATTGCTTCACTCCTCCTCTCTCTTCTCTTCCTCCACTCTGTGGAATCCACAGAACCAGCAGGAATCAACCCCCAAAATTCTCCCAA
AATGGACTGCGGCGGAGCGTGTATCGAAAGATGCAAGTTGTCGTCAAGGCCGCGGCTGTGCAATAGGGCATGCGGCACGTGCTGTCTGCGTTGCAACTGCGTTCCGCCGG
GGACGTCCGGCAACCACCATCTGTGCCCCTGCTACGCCGCCATGACCACCCACGGCGGGCGCCTCAAGTGTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATCCCCAGTTGATCCTGCCCACTCCTCTGTTCACTGAACCACAAAGCTAAAGCTTTTGCTATAAAATCCCAACCCTCTGATCTCACTCTCTCAAATTAAATTCATTTCCA
ATTCTCCTCAAAATACCAAAAAAAAAAAATGTCAATCTTCTTCAAAGCTTTCATTGCTTCACTCCTCCTCTCTCTTCTCTTCCTCCACTCTGTGGAATCCACAGAACCAG
CAGGAATCAACCCCCAAAATTCTCCCAAAATGGACTGCGGCGGAGCGTGTATCGAAAGATGCAAGTTGTCGTCAAGGCCGCGGCTGTGCAATAGGGCATGCGGCACGTGC
TGTCTGCGTTGCAACTGCGTTCCGCCGGGGACGTCCGGCAACCACCATCTGTGCCCCTGCTACGCCGCCATGACCACCCACGGCGGGCGCCTCAAGTGTCCTTGATTCTT
CCAACTTTTTTACTATATGTGTAAATATATTATGTATGTTTAAATTATCCTACTCTTTTCTTTTATATATATGTCTATATGTAATATGTATATTATAAATGGTGCTTCTT
TTGTAAGCTCGGTGGGTTGCTTTGCAAAGTTTAATGAACCTACACTTTTGTGTAGTTTTCTTCTTTTAAATAAA
Protein sequenceShow/hide protein sequence
MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP