CuGenDBv2

Gene ID	Sed0026560
Organism	Sechium edule (Chayote v1)
Description	Nudix hydrolase domain-containing protein
Genome location	LG12:8871540..8881575
RNA-Seq Expression	Sed0026560
Synteny	Sed0026560
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	IPR000086 - NUDIX hydrolase domain IPR015797 - NUDIX hydrolase-like domain superfamily IPR029401 - Nudix hydrolase, N-terminal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022158352.1 nudix hydrolase 23, chloroplastic isoform X2 [Momordica charantia]

5.1e-94

83.25

Show/hide

Query:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE
        S EK  N RFCQWCGGQTKHGIPDGE+KLR ICT CGKITYQNPKMVVGCLI HDNK+LLCKR IEPSYGL  L   +   G +A DGAIRETLEEANAE
Subjt:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE

Query:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH
        VEV SPFAQLDIPLIGQ Y+IFMG+LKKPHF PGPESLECRLFSLDD+P+DSLAFSSMLVTLRLYVEDVKAG+I+FHYGTIN RPGTGASDIHA+TLD H
Subjt:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH

Query:  LRL
        LRL
Subjt:  LRL

XP_022934288.1 nudix hydrolase 23, chloroplastic [Cucurbita moschata]

5.1e-94

83.25

Show/hide

Query:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE
        S E+  N RFCQWCGGQTKHGIPD E+KLR ICT CGKITYQNPKMVVGCLI HD+K+LLCKR IEPSYGL  L   +   G +AVDGAIRETLEEANAE
Subjt:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE

Query:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH
        VEVTSPFAQLDIPLIGQ Y+IF GKLKKPHFSPGPES+ECRLFSLDDIP+DSLAFSSMLVTL+LYVEDVKAGR+SFHYGTIN RPGTGASDIHA+TLD H
Subjt:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH

Query:  LRL
        LRL
Subjt:  LRL

XP_022983042.1 nudix hydrolase 23, chloroplastic [Cucurbita maxima]

6.7e-94

83.25

Show/hide

Query:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE
        S EK  N RFCQWCGGQTKHGIPD E+KLR ICT CGKITYQNPKMVVGCLI HD+K+LLCKR IEPSYGL  L   +   G +AVDGAIRETLEEANAE
Subjt:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE

Query:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH
        VEVTSPFAQLDIPLIGQ Y+IF GKLKKPHFSPGPES+ECRLFSLDDIP++SLAFSSMLVTL+LYVEDVKAGR+SFHYGTIN RPGTGASDIHA+TLD H
Subjt:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH

Query:  LRL
        LRL
Subjt:  LRL

XP_023526942.1 nudix hydrolase 23, chloroplastic [Cucurbita pepo subsp. pepo]

5.1e-94

82.13

Show/hide

Query:  SESSSTEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEE
        +E  S EK  N RFCQWCGGQTKHGIPD E+KLR ICT CGKITYQNPKMVVGCLI HD+K+LLCKR IEPSYGL  L   +   G +AVDGAIRETLEE
Subjt:  SESSSTEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEE

Query:  ANAEVEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFT
        ANAEVEVTSPFAQLDIPLIGQ Y+IF GKLKKPHFSPGPES+ECRLFSLDDIP++SLAFSSMLVTL+LYVEDVKAGR+SFHYGTIN RPGTGASDIHA+T
Subjt:  ANAEVEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFT

Query:  LDRHLRL
        LD HLRL
Subjt:  LDRHLRL

XP_031738511.1 nudix hydrolase 23, chloroplastic isoform X2 [Cucumis sativus]

6.1e-95

83.02

Show/hide

Query:  MSES----SSTEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIR
        MSES    SSTEK  N RFCQWCGGQTKHGIP+GE+KLR ICT CGKITYQNPKMVVGCLI HDNKVLLC+R IEPSYGL  L   +   G +A DGAIR
Subjt:  MSES----SSTEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIR

Query:  ETLEEANAEVEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASD
        ETLEEANAEVEVTSPFAQLDIPLIGQ Y+IFMGKLKKP+FSPGPESLECRLF LDDIP+DSLAFSSMLVTLRLYVEDVKAGR +FHYGTIN RPGTGASD
Subjt:  ETLEEANAEVEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASD

Query:  IHAFTLDRHLRL
        IHA+TLD HLRL
Subjt:  IHAFTLDRHLRL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGX9 Nudix hydrolase domain-containing protein

4.3e-94

83.74

Show/hide

Query:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE
        S+EK  N RFCQWCGGQTKHGIP+GE+KLR ICT CGKITYQNPKMVVGCLI HDNKVLLC+R IEPSYGL  L   +   G +A DGAIRETLEEANAE
Subjt:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE

Query:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH
        VEVTSPFAQLDIPLIGQ Y+IFMGKLKKP+FSPGPESLECRLF LDDIP+DSLAFSSMLVTLRLYVEDVKAGR +FHYGTIN RPGTGASDIHA+TLD H
Subjt:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH

Query:  LRL
        LRL
Subjt:  LRL

A0A5A7TPK7 Nudix hydrolase 23

5.6e-94

83.25

Show/hide

Query:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE
        S+EK  N RFCQWCGGQTKHGIPDGE+KLR ICT CG+ITYQNPKMVVGCLI H+NKVLLC+R IEPSYGL  L   +   G +A DGAIRETLEEANAE
Subjt:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE

Query:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH
        VEVTSPFAQLDIPLIGQ Y+IF+GKLKKPHFSPGPESLECRLF LDDIP+DSLAFSSMLVTLRLYVEDVKAGR +FHYGTIN RPGTGASDIHA+TLD H
Subjt:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH

Query:  LRL
        LRL
Subjt:  LRL

A0A6J1DX07 nudix hydrolase 23, chloroplastic isoform X2

2.5e-94

83.25

Show/hide

Query:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE
        S EK  N RFCQWCGGQTKHGIPDGE+KLR ICT CGKITYQNPKMVVGCLI HDNK+LLCKR IEPSYGL  L   +   G +A DGAIRETLEEANAE
Subjt:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE

Query:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH
        VEV SPFAQLDIPLIGQ Y+IFMG+LKKPHF PGPESLECRLFSLDD+P+DSLAFSSMLVTLRLYVEDVKAG+I+FHYGTIN RPGTGASDIHA+TLD H
Subjt:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH

Query:  LRL
        LRL
Subjt:  LRL

A0A6J1F791 nudix hydrolase 23, chloroplastic

2.5e-94

83.25

Show/hide

Query:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE
        S E+  N RFCQWCGGQTKHGIPD E+KLR ICT CGKITYQNPKMVVGCLI HD+K+LLCKR IEPSYGL  L   +   G +AVDGAIRETLEEANAE
Subjt:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE

Query:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH
        VEVTSPFAQLDIPLIGQ Y+IF GKLKKPHFSPGPES+ECRLFSLDDIP+DSLAFSSMLVTL+LYVEDVKAGR+SFHYGTIN RPGTGASDIHA+TLD H
Subjt:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH

Query:  LRL
        LRL
Subjt:  LRL

A0A6J1IY67 nudix hydrolase 23, chloroplastic

3.3e-94

83.25

Show/hide

Query:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE
        S EK  N RFCQWCGGQTKHGIPD E+KLR ICT CGKITYQNPKMVVGCLI HD+K+LLCKR IEPSYGL  L   +   G +AVDGAIRETLEEANAE
Subjt:  STEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAE

Query:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH
        VEVTSPFAQLDIPLIGQ Y+IF GKLKKPHFSPGPES+ECRLFSLDDIP++SLAFSSMLVTL+LYVEDVKAGR+SFHYGTIN RPGTGASDIHA+TLD H
Subjt:  VEVTSPFAQLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRH

Query:  LRL
        LRL
Subjt:  LRL

SwissProt top hits

e value

%identity

Alignment

P93740 Nudix hydrolase 23, chloroplastic

1.1e-78

71.13

Show/hide

Query:  RFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAEVEVTSPFA
        +FCQWCGG TKH IPDGE+KLR ICT CGKI YQNPKMVVGCLI H+ KVLLCKRNI+PS+GL  L   +   G +A  GA+RET EEA A VEV SPFA
Subjt:  RFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAEVEVTSPFA

Query:  QLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRHLR
        QLDIPLIGQ YVIF+ KLK  HF+PGPESLECRLF+LD+IP+DSLAFSS+ VTL LY+ED+K G++ FHYGTIN RPG+  SDI AF+LD HL+
Subjt:  QLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRHLR

Arabidopsis top hits

e value

%identity

Alignment

AT2G42070.1 nudix hydrolase homolog 23

7.7e-80

71.13

Show/hide

Query:  RFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAEVEVTSPFA
        +FCQWCGG TKH IPDGE+KLR ICT CGKI YQNPKMVVGCLI H+ KVLLCKRNI+PS+GL  L   +   G +A  GA+RET EEA A VEV SPFA
Subjt:  RFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNW---GVAAVDGAIRETLEEANAEVEVTSPFA

Query:  QLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRHLR
        QLDIPLIGQ YVIF+ KLK  HF+PGPESLECRLF+LD+IP+DSLAFSS+ VTL LY+ED+K G++ FHYGTIN RPG+  SDI AF+LD HL+
Subjt:  QLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRHLR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCGGAATCATCTTCAACTGAAAAAAATCATAATGCACGTTTCTGTCAGTGGTGCGGAGGCCAAACTAAGCATGGAATACCTGATGGAGAGAAGAAATTGAGACCTAT
TTGCACATTTTGTGGGAAGATAACCTATCAAAATCCAAAGATGGTCGTTGGTTGCCTGATTATTCACGACAATAAGGTCTTACTTTGCAAGAGGAACATCGAGCCATCTT
ATGGCCTTTGCTGGTTATTTGGAAATTGGGGAGTCGCAGCTGTTGATGGTGCAATTAGGGAAACCTTGGAAGAAGCAAATGCAGAAGTGGAAGTTACATCCCCTTTTGCT
CAGTTAGACATCCCTCTAATTGGCCAAATGTATGTAATTTTCATGGGAAAGTTGAAGAAACCCCATTTCTCTCCCGGTCCCGAATCCTTAGAATGCCGCCTTTTTTCTCT
TGACGATATACCTTATGATTCTCTTGCATTTTCATCCATGCTGGTTACGTTAAGGCTGTATGTAGAGGATGTCAAGGCGGGAAGAATCTCTTTCCATTATGGCACCATCA
ATATAAGGCCTGGCACAGGTGCTTCAGATATTCATGCCTTTACTCTTGATCGTCATCTAAGATTGTGA

mRNA sequence

Show/hide mRNA sequence

ATTGAATGCTCCTTTTGGTTGGGTCAGCTACGATTTACGGTTTCAAATTCCATTCAAATTCAGAGAAATTGAAGATGGATAATGCGAAAAGCTGTTCATCTTTTGGGTGG
CTGATCCGGGTTGGTTTCGAATCTTTGTAAACCCAATACCCATTGTTGGATTGGGTTTCAATTTCATCGATTCCAAACCATTGTCAACGTCGTCTTCGCTATCTTGTTCC
TCGAAGTTGTTGTTTCAAAGCATTTTGTGGGTCTACGTGTTTTTCTGAGGCAAATCAGCAACTTTGTCTATGTCGGAATCATCTTCAACTGAAAAAAATCATAATGCACG
TTTCTGTCAGTGGTGCGGAGGCCAAACTAAGCATGGAATACCTGATGGAGAGAAGAAATTGAGACCTATTTGCACATTTTGTGGGAAGATAACCTATCAAAATCCAAAGA
TGGTCGTTGGTTGCCTGATTATTCACGACAATAAGGTCTTACTTTGCAAGAGGAACATCGAGCCATCTTATGGCCTTTGCTGGTTATTTGGAAATTGGGGAGTCGCAGCT
GTTGATGGTGCAATTAGGGAAACCTTGGAAGAAGCAAATGCAGAAGTGGAAGTTACATCCCCTTTTGCTCAGTTAGACATCCCTCTAATTGGCCAAATGTATGTAATTTT
CATGGGAAAGTTGAAGAAACCCCATTTCTCTCCCGGTCCCGAATCCTTAGAATGCCGCCTTTTTTCTCTTGACGATATACCTTATGATTCTCTTGCATTTTCATCCATGC
TGGTTACGTTAAGGCTGTATGTAGAGGATGTCAAGGCGGGAAGAATCTCTTTCCATTATGGCACCATCAATATAAGGCCTGGCACAGGTGCTTCAGATATTCATGCCTTT
ACTCTTGATCGTCATCTAAGATTGTGAAAAAGTTAAGGAGCTCAAGGGTAAGACTTTAGGCTCCATCTATTTTCTTTCAAACTTGAAAGTAGAAATATGGACCACCTACA
ACCAAGTGGAGATAAAGACAACTGCAAATTTTTAAAGATAATAGCAAATCAACATTGGCTTTTGTAATCTGAAAAAGGGCAACATTGGTATGTACATTTGGTTTCAATCC
CTTTGGTGAACTTGTACAATTTGTGCATTGTTTATACCAATTGAGATATGCTTAGTTTGAAAAGCCAACGAATTATCTAATACTTTTTGGTGAGATCACATCAATATCGT
TACTACTTAGACGACAG

Protein sequence

Show/hide protein sequence

MSESSSTEKNHNARFCQWCGGQTKHGIPDGEKKLRPICTFCGKITYQNPKMVVGCLIIHDNKVLLCKRNIEPSYGLCWLFGNWGVAAVDGAIRETLEEANAEVEVTSPFA
QLDIPLIGQMYVIFMGKLKKPHFSPGPESLECRLFSLDDIPYDSLAFSSMLVTLRLYVEDVKAGRISFHYGTINIRPGTGASDIHAFTLDRHLRL

Sed0026560 (gene) of Chayote v1 genome