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Sed0026568 (gene) of Chayote v1 genome

Gene IDSed0026568
OrganismSechium edule (Chayote v1)
DescriptionLoricrin
Genome locationLG03:46308268..46309622
RNA-Seq ExpressionSed0026568
SyntenySed0026568
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020835.1 hypothetical protein SDJN02_17523, partial [Cucurbita argyrosperma subsp. argyrosperma]8.9e-3064.71Show/hide
Query:  DDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRV--FSSSI----------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLR
        DDGKM +GKKGF K KQ+MFYPFR AKKQILR +IKR    SSSI          K  +D SV  QGCGFC  +  ISDSKNGS PTDPNH  FT+EML+
Subjt:  DDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRV--FSSSI----------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLR

Query:  VLIQNNDFYSKQSNPHLGV
        VLI+ NDFYSK+SNPHLG+
Subjt:  VLIQNNDFYSKQSNPHLGV

XP_008452984.1 PREDICTED: uncharacterized protein LOC103493824 [Cucumis melo]3.3e-3261.03Show/hide
Query:  QAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRVFSSSI---------------------KRGFDGSVRYQGCGFCLPELCISDSKNG
        Q ++    DD KM MGKKGF K KQ+MFYPFR AKKQILR +IKR  S S                      KRGFDGSV  QGCGFCL +L ISDSKNG
Subjt:  QAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRVFSSSI---------------------KRGFDGSVRYQGCGFCLPELCISDSKNG

Query:  SPPTDPNHRNFTEEMLRVLIQNNDFYSKQSNPHLGV
        S PTDPNHR FT EML+VLI+ NDFYSK+SNPHL V
Subjt:  SPPTDPNHRNFTEEMLRVLIQNNDFYSKQSNPHLGV

XP_011648888.1 uncharacterized protein LOC101216013 [Cucumis sativus]1.9e-3263.85Show/hide
Query:  QAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKR-----VFSSSI----------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDP
        Q ++    DD KM MGKKGF K KQ+MFYPFR AKKQILR +IKR       SSS+          KRGFDGSV  QGCGFCL +L ISDSKNGS PTDP
Subjt:  QAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKR-----VFSSSI----------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDP

Query:  NHRNFTEEMLRVLIQNNDFYSKQSNPHLGV
        NHR FT EML+VLI+ NDFYSK+SNPH  V
Subjt:  NHRNFTEEMLRVLIQNNDFYSKQSNPHLGV

XP_022969627.1 uncharacterized protein LOC111468598 [Cucurbita maxima]6.4e-2862.81Show/hide
Query:  DDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRV------FSSSI----------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTE
        DDGKM +GKKGF K KQ+MFYPFR AKKQILR +IKR        SSSI          K  +D SV  QGCGFC  +  ISDSKNGS PTDPNH  FT 
Subjt:  DDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRV------FSSSI----------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTE

Query:  EMLRVLIQNNDFYSKQSNPHL
        EML+VLI+ NDFYSK+SNPHL
Subjt:  EMLRVLIQNNDFYSKQSNPHL

XP_038890967.1 uncharacterized protein LOC120080390 [Benincasa hispida]5.6e-3262.79Show/hide
Query:  QAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIK--------------RVFSSSIKRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPN
        Q ++    DD KM MGKKGF K KQ+MFYPFR AKKQILR +IK              R  +SS KRGFDGSV  QGCGFC  +L ISDSKNGS PTDPN
Subjt:  QAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIK--------------RVFSSSIKRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPN

Query:  HRNFTEEMLRVLIQNNDFYSKQSNPHLGV
        +R FT EML+VLI+ NDFYSK+SNPHL V
Subjt:  HRNFTEEMLRVLIQNNDFYSKQSNPHLGV

TrEMBL top hitse value%identityAlignment
A0A0A0LH19 Uncharacterized protein9.3e-3363.85Show/hide
Query:  QAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKR-----VFSSSI----------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDP
        Q ++    DD KM MGKKGF K KQ+MFYPFR AKKQILR +IKR       SSS+          KRGFDGSV  QGCGFCL +L ISDSKNGS PTDP
Subjt:  QAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKR-----VFSSSI----------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDP

Query:  NHRNFTEEMLRVLIQNNDFYSKQSNPHLGV
        NHR FT EML+VLI+ NDFYSK+SNPH  V
Subjt:  NHRNFTEEMLRVLIQNNDFYSKQSNPHLGV

A0A1S3BWA1 uncharacterized protein LOC1034938241.6e-3261.03Show/hide
Query:  QAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRVFSSSI---------------------KRGFDGSVRYQGCGFCLPELCISDSKNG
        Q ++    DD KM MGKKGF K KQ+MFYPFR AKKQILR +IKR  S S                      KRGFDGSV  QGCGFCL +L ISDSKNG
Subjt:  QAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRVFSSSI---------------------KRGFDGSVRYQGCGFCLPELCISDSKNG

Query:  SPPTDPNHRNFTEEMLRVLIQNNDFYSKQSNPHLGV
        S PTDPNHR FT EML+VLI+ NDFYSK+SNPHL V
Subjt:  SPPTDPNHRNFTEEMLRVLIQNNDFYSKQSNPHLGV

A0A6J1DRZ8 uncharacterized protein LOC1110233075.3e-2863.48Show/hide
Query:  DDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRVFSSSI----------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLRVL
        DDGK   GK+GF K KQ++ YPFR AKKQILR KIKR  SSS           KR  DGSV  QGCGFC  EL ISDSKNGS  TDPN+R FT+EML++L
Subjt:  DDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRVFSSSI----------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLRVL

Query:  IQNNDFYSKQSNPHL
        I+ NDFYSK+ NPHL
Subjt:  IQNNDFYSKQSNPHL

A0A6J1FAJ4 uncharacterized protein LOC1114439013.1e-2864.1Show/hide
Query:  DDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRV--FSSSI----------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLR
        DDGK  +GKKGF K KQ+MFYPFR AKKQILR +IKR    SSSI          K  +D SV  QGCGFC  +  ISDSKNGS PTDPNH  FT+EML+
Subjt:  DDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRV--FSSSI----------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLR

Query:  VLIQNNDFYSKQSNPHL
        VLI+ NDFYSK+SNPHL
Subjt:  VLIQNNDFYSKQSNPHL

A0A6J1HWU1 uncharacterized protein LOC1114685983.1e-2862.81Show/hide
Query:  DDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRV------FSSSI----------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTE
        DDGKM +GKKGF K KQ+MFYPFR AKKQILR +IKR        SSSI          K  +D SV  QGCGFC  +  ISDSKNGS PTDPNH  FT 
Subjt:  DDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRV------FSSSI----------KRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTE

Query:  EMLRVLIQNNDFYSKQSNPHL
        EML+VLI+ NDFYSK+SNPHL
Subjt:  EMLRVLIQNNDFYSKQSNPHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G26720.1 unknown protein5.6e-0652.63Show/hide
Query:  DSKNGSPPTDPNHRNFTEEMLRVLIQNNDFYSKQSNPH
        DS   SP +DPN   F+ EMLRV+++ NDF S + NPH
Subjt:  DSKNGSPPTDPNHRNFTEEMLRVLIQNNDFYSKQSNPH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGAATCAAGGCAAGCCCAGAACGGTATAATCTCAGATGATGGAAAAATGGCGATGGGGAAAAAGGGTTTTCGAAAGGTTAAGCAGATGATGTTCTATCCATTTCG
AATGGCCAAGAAACAGATTCTGAGGCCGAAGATTAAAAGGGTTTTTTCTTCTTCGATTAAAAGGGGTTTTGATGGGAGTGTAAGATATCAAGGTTGTGGTTTCTGTTTGC
CCGAACTTTGTATTTCAGATTCTAAAAATGGGTCTCCTCCAACTGACCCAAATCACCGCAACTTCACTGAAGAAATGTTGAGAGTTCTCATTCAGAACAATGATTTCTAT
TCCAAACAATCCAATCCTCATTTGGGTGTTTAA
mRNA sequenceShow/hide mRNA sequence
TTTGTTCAGTTATCACAGAGAAAGCAAAATCATGGAAGCAATTCCACCAAATTGGCGCCACCTGCCCCTGTTCATCACTTTGTTCATTCCCTCAAACAATTTCCCTTCTG
ATTCTCACACTCAACAACAAAAAACCCACTTTCAAATTCCCACAAATTCATTCCAAAATCCCCATTTCATCCCTTCAAATTGGGGGTTTTCATTTCTGTATGATAGAATC
AAGGCAAGCCCAGAACGGTATAATCTCAGATGATGGAAAAATGGCGATGGGGAAAAAGGGTTTTCGAAAGGTTAAGCAGATGATGTTCTATCCATTTCGAATGGCCAAGA
AACAGATTCTGAGGCCGAAGATTAAAAGGGTTTTTTCTTCTTCGATTAAAAGGGGTTTTGATGGGAGTGTAAGATATCAAGGTTGTGGTTTCTGTTTGCCCGAACTTTGT
ATTTCAGATTCTAAAAATGGGTCTCCTCCAACTGACCCAAATCACCGCAACTTCACTGAAGAAATGTTGAGAGTTCTCATTCAGAACAATGATTTCTATTCCAAACAATC
CAATCCTCATTTGGGTGTTTAAGTGAACGCTAGGAAG
Protein sequenceShow/hide protein sequence
MIESRQAQNGIISDDGKMAMGKKGFRKVKQMMFYPFRMAKKQILRPKIKRVFSSSIKRGFDGSVRYQGCGFCLPELCISDSKNGSPPTDPNHRNFTEEMLRVLIQNNDFY
SKQSNPHLGV