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Sed0026584 (gene) of Chayote v1 genome

Gene IDSed0026584
OrganismSechium edule (Chayote v1)
DescriptionRetrotransposon protein
Genome locationLG10:11433191..11434227
RNA-Seq ExpressionSed0026584
SyntenySed0026584
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063789.1 retrotransposon protein [Cucumis melo var. makuwa]4.3e-0528.07Show/hide
Query:  KQAPYYEDLAIIFVKDRALGGGSKRPYYQGHQAASDVDSDYSPEFDINDDTPTFDYYPQSQDFIPTDVSMGEETQTTPRTRPSSSRILRPSRKRKISTGE
        K  PY+ DL ++F +DRA  G  K P   G Q A D + D   + DIN     FD  P      P     GE+  +TP +    +   RPS+KR+  +G+
Subjt:  KQAPYYEDLAIIFVKDRALGGGSKRPYYQGHQAASDVDSDYSPEFDINDDTPTFDYYPQSQDFIPTDVSMGEETQTTPRTRPSSSRILRPSRKRKISTGE

Query:  NASDNMTTAFEKSAEGIVKHLHGQKIKSGHLKECIIISNTLLTNPAMYTTYIGSDDDWKYEYCMEVLGKTP
                        +V   H                 +LL +P M   ++    +WKY  CM +LG+ P
Subjt:  NASDNMTTAFEKSAEGIVKHLHGQKIKSGHLKECIIISNTLLTNPAMYTTYIGSDDDWKYEYCMEVLGKTP
KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]7.3e-0528.9Show/hide
Query:  RALGGGSKRPYYQGHQAASDVDSDYSPEFDINDDTPTFDYYPQSQDFIPTDVSMGEETQTTPRTRPSSSRILRPSRKRKISTGE-----NASDNMTT---
        +A GG  K P   G Q A D + D   + DIN     FD  P      P     GE+  +TP +    + + RPS+KR+  +G+      AS   T+   
Subjt:  RALGGGSKRPYYQGHQAASDVDSDYSPEFDINDDTPTFDYYPQSQDFIPTDVSMGEETQTTPRTRPSSSRILRPSRKRKISTGE-----NASDNMTT---

Query:  ----AFEKSAEGIVKHLHG------QKIKSGHLKECIIISNTLLTNPAMYTTYIGSDDDWKYEYCMEVLGKTP
            A+++    I   LH       Q I    + +C+I++ +LL +P M   ++    +WKY  CM +LG+ P
Subjt:  ----AFEKSAEGIVKHLHG------QKIKSGHLKECIIISNTLLTNPAMYTTYIGSDDDWKYEYCMEVLGKTP
TrEMBL top hitse value%identityAlignment
A0A5A7VE44 Retrotransposon protein2.1e-0528.07Show/hide
Query:  KQAPYYEDLAIIFVKDRALGGGSKRPYYQGHQAASDVDSDYSPEFDINDDTPTFDYYPQSQDFIPTDVSMGEETQTTPRTRPSSSRILRPSRKRKISTGE
        K  PY+ DL ++F +DRA  G  K P   G Q A D + D   + DIN     FD  P      P     GE+  +TP +    +   RPS+KR+  +G+
Subjt:  KQAPYYEDLAIIFVKDRALGGGSKRPYYQGHQAASDVDSDYSPEFDINDDTPTFDYYPQSQDFIPTDVSMGEETQTTPRTRPSSSRILRPSRKRKISTGE

Query:  NASDNMTTAFEKSAEGIVKHLHGQKIKSGHLKECIIISNTLLTNPAMYTTYIGSDDDWKYEYCMEVLGKTP
                        +V   H                 +LL +P M   ++    +WKY  CM +LG+ P
Subjt:  NASDNMTTAFEKSAEGIVKHLHGQKIKSGHLKECIIISNTLLTNPAMYTTYIGSDDDWKYEYCMEVLGKTP
A0A5A7VG45 Retrotransposon protein3.5e-0528.9Show/hide
Query:  RALGGGSKRPYYQGHQAASDVDSDYSPEFDINDDTPTFDYYPQSQDFIPTDVSMGEETQTTPRTRPSSSRILRPSRKRKISTGE-----NASDNMTT---
        +A GG  K P   G Q A D + D   + DIN     FD  P      P     GE+  +TP +    + + RPS+KR+  +G+      AS   T+   
Subjt:  RALGGGSKRPYYQGHQAASDVDSDYSPEFDINDDTPTFDYYPQSQDFIPTDVSMGEETQTTPRTRPSSSRILRPSRKRKISTGE-----NASDNMTT---

Query:  ----AFEKSAEGIVKHLHG------QKIKSGHLKECIIISNTLLTNPAMYTTYIGSDDDWKYEYCMEVLGKTP
            A+++    I   LH       Q I    + +C+I++ +LL +P M   ++    +WKY  CM +LG+ P
Subjt:  ----AFEKSAEGIVKHLHG------QKIKSGHLKECIIISNTLLTNPAMYTTYIGSDDDWKYEYCMEVLGKTP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACAAGAGAGTCATCCAATAGCTCGAGGGCTACGAAACAAGCCCCTTATTATGAAGATTTGGCCATAATATTTGTCAAAGATCGAGCTTTAGGTGGTGGTTCGAA
AAGGCCTTACTATCAGGGTCACCAAGCAGCATCTGATGTGGATTCAGACTACAGTCCAGAATTTGACATTAATGATGACACTCCAACTTTTGACTATTATCCTCAGAGTC
AAGACTTCATTCCTACTGATGTGTCTATGGGAGAAGAAACACAAACCACACCTAGGACTCGACCATCCAGCTCAAGGATTCTTAGGCCTTCTAGGAAGAGGAAGATCTCT
ACTGGGGAGAACGCGTCAGATAACATGACGACTGCATTCGAAAAGTCAGCAGAAGGAATTGTAAAACATCTACATGGCCAGAAGATAAAATCAGGTCATTTGAAGGAATG
TATAATAATCTCAAATACCCTTCTCACCAATCCAGCCATGTATACAACATACATTGGTTCTGACGACGATTGGAAATACGAGTATTGCATGGAAGTGTTAGGCAAAACTC
CTAACTTGAATGAGCATTCTCCATTCAACATTGAAGAAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTACAAGAGAGTCATCCAATAGCTCGAGGGCTACGAAACAAGCCCCTTATTATGAAGATTTGGCCATAATATTTGTCAAAGATCGAGCTTTAGGTGGTGGTTCGAA
AAGGCCTTACTATCAGGGTCACCAAGCAGCATCTGATGTGGATTCAGACTACAGTCCAGAATTTGACATTAATGATGACACTCCAACTTTTGACTATTATCCTCAGAGTC
AAGACTTCATTCCTACTGATGTGTCTATGGGAGAAGAAACACAAACCACACCTAGGACTCGACCATCCAGCTCAAGGATTCTTAGGCCTTCTAGGAAGAGGAAGATCTCT
ACTGGGGAGAACGCGTCAGATAACATGACGACTGCATTCGAAAAGTCAGCAGAAGGAATTGTAAAACATCTACATGGCCAGAAGATAAAATCAGGTCATTTGAAGGAATG
TATAATAATCTCAAATACCCTTCTCACCAATCCAGCCATGTATACAACATACATTGGTTCTGACGACGATTGGAAATACGAGTATTGCATGGAAGTGTTAGGCAAAACTC
CTAACTTGAATGAGCATTCTCCATTCAACATTGAAGAAGATTGA
Protein sequenceShow/hide protein sequence
MATRESSNSSRATKQAPYYEDLAIIFVKDRALGGGSKRPYYQGHQAASDVDSDYSPEFDINDDTPTFDYYPQSQDFIPTDVSMGEETQTTPRTRPSSSRILRPSRKRKIS
TGENASDNMTTAFEKSAEGIVKHLHGQKIKSGHLKECIIISNTLLTNPAMYTTYIGSDDDWKYEYCMEVLGKTPNLNEHSPFNIEED