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Sed0026588 (gene) of Chayote v1 genome

Gene IDSed0026588
OrganismSechium edule (Chayote v1)
DescriptionLysM domain-containing protein
Genome locationLG10:2039085..2040350
RNA-Seq ExpressionSed0026588
SyntenySed0026588
Gene Ontology termsNA
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]2.4e-1756.7Show/hide
Query:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVELSLE--CSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGFV
        MAKA  SIA+   FLLA SLL+F+   + R      V  E SLE  C+K +GVKSGDTCF +A AFKLTT  F+ INPN+NCSALF+ QW+C+N F+
Subjt:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVELSLE--CSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGFV

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]6.9e-1754.08Show/hide
Query:  MAKAFGSIAMNF-AFLLALSLLVFSNLGESRAHS-GGFVGVELSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGFVI
        MAKA   I+ +F  FLLA SLL+FS   E+R+    G V   L L+C+KV+GVK+GDTCFDL   FK+TT  F+ INPN+NC+ LFIGQW+C++  +I
Subjt:  MAKAFGSIAMNF-AFLLALSLLVFSNLGESRAHS-GGFVGVELSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGFVI

KZV16033.1 hypothetical protein F511_26162 [Dorcoceras hygrometricum]1.5e-1646.81Show/hide
Query:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVELSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGF
        MAKA  + ++   F L LSL++ + + ESR          ++L C+ V  V  GDTCFD+A +F LTT+ F+ INPN+NC ALF+GQW+CI+GF
Subjt:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVELSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGF

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]3.1e-1755.67Show/hide
Query:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVE--LSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGFV
        MAKA   IA+   FLLA  LL+F     S +  G  V  E  L L+C+K +GVKSGDTCF LA+ FKL+T  FN INPN+NCSALF+GQW+C+N F+
Subjt:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVE--LSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGFV

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]6.9e-1756.12Show/hide
Query:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVE---LSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGFV
        MAKA  SIA+   FLLA SLL+F+          G V VE   L L+C+K +GVKSGDTCF +A AFKLTT  F+ INPN+NCSALF+ QW+C+N F+
Subjt:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVE---LSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGFV

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein3.4e-1754.08Show/hide
Query:  MAKAFGSIAMNF-AFLLALSLLVFSNLGESRAHS-GGFVGVELSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGFVI
        MAKA   I+ +F  FLLA SLL+FS   E+R+    G V   L L+C+KV+GVK+GDTCFDL   FK+TT  F+ INPN+NC+ LFIGQW+C++  +I
Subjt:  MAKAFGSIAMNF-AFLLALSLLVFSNLGESRAHS-GGFVGVELSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGFVI

A0A0A0KLD2 LysM domain-containing protein1.2e-1756.7Show/hide
Query:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVELSLE--CSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGFV
        MAKA  SIA+   FLLA SLL+F+   + R      V  E SLE  C+K +GVKSGDTCF +A AFKLTT  F+ INPN+NCSALF+ QW+C+N F+
Subjt:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVELSLE--CSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGFV

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like1.5e-1755.67Show/hide
Query:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVE--LSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGFV
        MAKA   IA+   FLLA  LL+F     S +  G  V  E  L L+C+K +GVKSGDTCF LA+ FKL+T  FN INPN+NCSALF+GQW+C+N F+
Subjt:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVE--LSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGFV

A0A2Z7A345 LysM domain-containing protein1.7e-1646.81Show/hide
Query:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVELSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGF
        MAKA  + ++   F L LSL++ + + ESR          ++L C+ V  V  GDTCFD+A +F LTT+ F+ INPN+NC ALF+GQW+CI+GF
Subjt:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVELSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGF

A0A2Z7A4L5 LysM domain-containing protein7.5e-1746.81Show/hide
Query:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVELSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGF
        MAKA  + ++   F L LSL++ + + ESR          ++L C+ V  V  GDTCFD+A +F LTT+ F+ INPN+NC ALF+GQW+CI+GF
Subjt:  MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVELSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAGGCTTTTGGTTCAATTGCCATGAATTTTGCCTTCTTATTGGCTCTGTCCCTTCTCGTCTTTTCAAATCTTGGAGAGAGTCGAGCTCACTCTGGTGGATTTGT
TGGGGTTGAATTAAGTTTGGAATGCAGCAAAGTTCATGGAGTGAAGAGTGGAGACACCTGCTTTGATCTTGCAAATGCGTTCAAGTTGACCACTTCACGTTTCAATCTCA
TAAATCCAAATATCAATTGCTCTGCTCTATTTATTGGTCAATGGGTTTGCATCAATGGCTTTGTCATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAGGCTTTTGGTTCAATTGCCATGAATTTTGCCTTCTTATTGGCTCTGTCCCTTCTCGTCTTTTCAAATCTTGGAGAGAGTCGAGCTCACTCTGGTGGATTTGT
TGGGGTTGAATTAAGTTTGGAATGCAGCAAAGTTCATGGAGTGAAGAGTGGAGACACCTGCTTTGATCTTGCAAATGCGTTCAAGTTGACCACTTCACGTTTCAATCTCA
TAAATCCAAATATCAATTGCTCTGCTCTATTTATTGGTCAATGGGTTTGCATCAATGGCTTTGTCATCTAA
Protein sequenceShow/hide protein sequence
MAKAFGSIAMNFAFLLALSLLVFSNLGESRAHSGGFVGVELSLECSKVHGVKSGDTCFDLANAFKLTTSRFNLINPNINCSALFIGQWVCINGFVI