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Sed0026621 (gene) of Chayote v1 genome

Gene IDSed0026621
OrganismSechium edule (Chayote v1)
DescriptionBEST Arabidopsis thaliana protein match is: transcription regulators .
Genome locationLG10:1268592..1269857
RNA-Seq ExpressionSed0026621
SyntenySed0026621
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052608.1 uncharacterized protein E6C27_scaffold120G002160 [Cucumis melo var. makuwa]3.1e-6079.64Show/hide
Query:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR
        MVSTLQ+RF+SR KLRLVRSL  TYES G+Q+  FWNAV+FIHKLK+KLE IER+YSNLL MKREYLNSIKQ H SKEVKVEK GEEF+VKVRCEKGGDR
Subjt:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR

Query:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKD
        LVSVLEAFEKM LNVVEARVSCTECF ME I VAED +QLLN++DIT+AINVAID KL   NQH  D
Subjt:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKD

XP_004134653.1 uncharacterized protein LOC101213083 [Cucumis sativus]6.8e-6079.17Show/hide
Query:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR
        MVSTLQ+RF+SR KLRLVRSL  TYES G+Q   FWNAV+FIHKLK+KLE IER+YSNLL MKREYLNSIKQ H SKEVKVEK GEEF+VKVRCEKGGDR
Subjt:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR

Query:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKDA
        LVSVLEAFEKM LNVVEARVSCTECF ME   VAED +QLLN++DITEAINVAID KL   NQH  D+
Subjt:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKDA

XP_008439723.1 PREDICTED: uncharacterized protein LOC103484437 [Cucumis melo]3.1e-6079.64Show/hide
Query:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR
        MVSTLQ+RF+SR KLRLVRSL  TYES G+Q+  FWNAV+FIHKLK+KLE IER+YSNLL MKREYLNSIKQ H SKEVKVEK GEEF+VKVRCEKGGDR
Subjt:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR

Query:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKD
        LVSVLEAFEKM LNVVEARVSCTECF ME I VAED +QLLN++DIT+AINVAID KL   NQH  D
Subjt:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKD

XP_022978770.1 uncharacterized protein LOC111478631 [Cucurbita maxima]6.8e-6075.3Show/hide
Query:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR
        MVST Q+RF+SRKKLRLVRSL  TY+S GKQSS FWNAV+F+HKLK+KLE IER+YSNLL+MKREYLNS+KQ H  KEVKVEK+GEEF+VKVRCEKGGDR
Subjt:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR

Query:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAEDNQLLNVTDITEAINVAIDSKLSVVNQHQKD
        LV+VLEAF+KM LNV++A+VSC+ECFSME I VAED Q LN+ DITEAIN AID K    NQ QK+
Subjt:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAEDNQLLNVTDITEAINVAIDSKLSVVNQHQKD

XP_038893157.1 uncharacterized protein LOC120082020 [Benincasa hispida]3.3e-6281.93Show/hide
Query:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR
        MVSTLQ+RF+SR KLRLVRSLA TYES  KQ   FWNAV+FIHKLK+KLE IER+YSNLLAMKREYLNSIKQ H  KEVKVEK GEEFKVKVRCEKGGDR
Subjt:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR

Query:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAEDNQLLNVTDITEAINVAIDSKLSVVNQHQKD
        LVSVLEAFEKM LNVVEARVSCTECF ME I VAE+++LLNV+DITEAINVAID KL   NQH KD
Subjt:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAEDNQLLNVTDITEAINVAIDSKLSVVNQHQKD

TrEMBL top hitse value%identityAlignment
A0A0A0KHW9 Uncharacterized protein3.3e-6079.17Show/hide
Query:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR
        MVSTLQ+RF+SR KLRLVRSL  TYES G+Q   FWNAV+FIHKLK+KLE IER+YSNLL MKREYLNSIKQ H SKEVKVEK GEEF+VKVRCEKGGDR
Subjt:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR

Query:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKDA
        LVSVLEAFEKM LNVVEARVSCTECF ME   VAED +QLLN++DITEAINVAID KL   NQH  D+
Subjt:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKDA

A0A1S3B049 uncharacterized protein LOC1034844371.5e-6079.64Show/hide
Query:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR
        MVSTLQ+RF+SR KLRLVRSL  TYES G+Q+  FWNAV+FIHKLK+KLE IER+YSNLL MKREYLNSIKQ H SKEVKVEK GEEF+VKVRCEKGGDR
Subjt:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR

Query:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKD
        LVSVLEAFEKM LNVVEARVSCTECF ME I VAED +QLLN++DIT+AINVAID KL   NQH  D
Subjt:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKD

A0A5A7UBN8 Uncharacterized protein1.5e-6079.64Show/hide
Query:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR
        MVSTLQ+RF+SR KLRLVRSL  TYES G+Q+  FWNAV+FIHKLK+KLE IER+YSNLL MKREYLNSIKQ H SKEVKVEK GEEF+VKVRCEKGGDR
Subjt:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR

Query:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKD
        LVSVLEAFEKM LNVVEARVSCTECF ME I VAED +QLLN++DIT+AINVAID KL   NQH  D
Subjt:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKD

A0A6J1IR65 uncharacterized protein LOC1114786313.3e-6075.3Show/hide
Query:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR
        MVST Q+RF+SRKKLRLVRSL  TY+S GKQSS FWNAV+F+HKLK+KLE IER+YSNLL+MKREYLNS+KQ H  KEVKVEK+GEEF+VKVRCEKGGDR
Subjt:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR

Query:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAEDNQLLNVTDITEAINVAIDSKLSVVNQHQKD
        LV+VLEAF+KM LNV++A+VSC+ECFSME I VAED Q LN+ DITEAIN AID K    NQ QK+
Subjt:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAEDNQLLNVTDITEAINVAIDSKLSVVNQHQKD

E5GC31 Uncharacterized protein1.5e-6079.64Show/hide
Query:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR
        MVSTLQ+RF+SR KLRLVRSL  TYES G+Q+  FWNAV+FIHKLK+KLE IER+YSNLL MKREYLNSIKQ H SKEVKVEK GEEF+VKVRCEKGGDR
Subjt:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR

Query:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKD
        LVSVLEAFEKM LNVVEARVSCTECF ME I VAED +QLLN++DIT+AINVAID KL   NQH  D
Subjt:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29270.1 unknown protein1.1e-2038.31Show/hide
Query:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR
        MV++ Q++  S+ K   +++L     S+ +QS     A+++I  LK+++E ++R+Y +L   K+E L      H  +EVKVEKIGE F+VK++  +G + 
Subjt:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDR

Query:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAI
        LV++LEAFE+M LNV +AR SC + F+ME IV  +  ++L +V D+T+ +  A+
Subjt:  LVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAI

AT2G40435.1 BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1)4.5e-0933.12Show/hide
Query:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKG-GD
        MVS  Q+R + ++K +L+RS+  ++      +S   +A  +I KLK K+E   +D +       E  +S      +  V VE + + F + V   K    
Subjt:  MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKG-GD

Query:  RLVSVLEAFEKMRLNVVEARVSCTECFSMEVI-VVAEDNQLLNVTDITEAINVAIDS
         LVSVLEAFE + LNV+EAR SCT+ FS+  + +  ED + ++   + +A+  AI S
Subjt:  RLVSVLEAFEKMRLNVVEARVSCTECFSMEVI-VVAEDNQLLNVTDITEAINVAIDS

AT3G56220.1 transcription regulators8.5e-0833.12Show/hide
Query:  MVSTLQRRFNS-RKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKG-G
        MVS   +R +S R+K  L+RS+  ++     ++S   +A  +I KLK K+E+I    +N    ++ +  S      +  V VE + + F +KV   K   
Subjt:  MVSTLQRRFNS-RKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKG-G

Query:  DRLVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVA--EDNQLLNVTDITEAINVAI
          LV VLE FE + L+VVEARVSCT+ FS+  I  +  +D   ++   + +A+  AI
Subjt:  DRLVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVA--EDNQLLNVTDITEAINVAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTACATTACAAAGGAGATTCAACTCGCGAAAGAAGCTACGCCTTGTTCGATCTCTAGCCGGCACCTACGAATCCCTAGGGAAACAGAGCAGTGCTTTCTGGAA
TGCTGTTATTTTCATTCACAAGCTTAAGATCAAGCTGGAAGAAATTGAGAGAGATTATTCCAATCTATTGGCCATGAAAAGAGAATACTTGAACTCAATTAAGCAACCCC
ATGTCTCAAAGGAAGTGAAGGTTGAGAAGATTGGAGAAGAGTTTAAAGTGAAAGTGAGATGTGAAAAGGGAGGGGACAGATTGGTATCAGTGTTGGAGGCATTTGAGAAA
ATGAGACTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTCCATGGAGGTCATTGTTGTAGCTGAAGATAATCAATTGCTTAATGTAACAGATATAACTGA
AGCTATTAATGTAGCTATTGATTCAAAATTATCAGTTGTAAATCAACATCAGAAAGATGCTGAAATTTAG
mRNA sequenceShow/hide mRNA sequence
GGAAGCAGCTAATTGGTCTCTCTCTGCACTGCCCTGTCCATATTTGCATGCCTGCTTTCGATTGTACTGTTCATGCATGCCCTTGTTCACTGATCAAACCCCTCTTCCCT
TATGTCCTTTGTTTGGTAATATGGAAAATAAATGAACATTGCTACACCAATGTACTTGGCAGACAAACATTACACCCCACGACAAAAGCACTATACATATCCATACATCT
CTTTAACTCTACAAATACATACAAGTATTTCCGTACGAATTATTAAATATTGCATATGTTTACAACTCCTTTTTTGCTATAAAAACCAAGACCCTTCATTTCACTAACTT
GTCTTCATTGGGAACCAAGCTCAAGTTGAGAGACAGAGATGGTTTCTACATTACAAAGGAGATTCAACTCGCGAAAGAAGCTACGCCTTGTTCGATCTCTAGCCGGCACC
TACGAATCCCTAGGGAAACAGAGCAGTGCTTTCTGGAATGCTGTTATTTTCATTCACAAGCTTAAGATCAAGCTGGAAGAAATTGAGAGAGATTATTCCAATCTATTGGC
CATGAAAAGAGAATACTTGAACTCAATTAAGCAACCCCATGTCTCAAAGGAAGTGAAGGTTGAGAAGATTGGAGAAGAGTTTAAAGTGAAAGTGAGATGTGAAAAGGGAG
GGGACAGATTGGTATCAGTGTTGGAGGCATTTGAGAAAATGAGACTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTCCATGGAGGTCATTGTTGTAGCT
GAAGATAATCAATTGCTTAATGTAACAGATATAACTGAAGCTATTAATGTAGCTATTGATTCAAAATTATCAGTTGTAAATCAACATCAGAAAGATGCTGAAATTTAGCC
ACTTTGCTAACCTTTCAGTTGAATGAATATGTGTTCTCTTGTGTTTTGCTTC
Protein sequenceShow/hide protein sequence
MVSTLQRRFNSRKKLRLVRSLAGTYESLGKQSSAFWNAVIFIHKLKIKLEEIERDYSNLLAMKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDRLVSVLEAFEK
MRLNVVEARVSCTECFSMEVIVVAEDNQLLNVTDITEAINVAIDSKLSVVNQHQKDAEI