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Sed0026701 (gene) of Chayote v1 genome

Gene IDSed0026701
OrganismSechium edule (Chayote v1)
DescriptionCCR4-NOT transcription complex subunit like
Genome locationLG07:5212397..5215759
RNA-Seq ExpressionSed0026701
SyntenySed0026701
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593336.1 hypothetical protein SDJN03_12812, partial [Cucurbita argyrosperma subsp. sororia]6.5e-3972.31Show/hide
Query:  MGSILIAPPCELNLCSRSRRRRPCLNLKS---AVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILA
        M S+  APP +++L S     RP L+ K+   ++ GVKFH N FPIPSFRYKN KGLEL QRSFSITASNSSDGNSTKE+ DGSK TGDAQGPPFLTILA
Subjt:  MGSILIAPPCELNLCSRSRRRRPCLNLKS---AVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILA

Query:  GLFVFSLLLWIISSSVTSLIGLVVKLISTK
        G FVFSL+LWI+SSSVT+LI LVVKLISTK
Subjt:  GLFVFSLLLWIISSSVTSLIGLVVKLISTK

KAG7025683.1 hypothetical protein SDJN02_12181 [Cucurbita argyrosperma subsp. argyrosperma]3.2e-3871.54Show/hide
Query:  MGSILIAPPCELNLCSRSRRRRPCLNLKS---AVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILA
        M S+  APP +++L S     RP L+ K+   ++ GVKFH N FPIPSFRYKN KGLEL QRSFSITASNSSDGNSTKE+ DGSK T DAQGPPFLTILA
Subjt:  MGSILIAPPCELNLCSRSRRRRPCLNLKS---AVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILA

Query:  GLFVFSLLLWIISSSVTSLIGLVVKLISTK
        G FVFSL+LWI+SSSVT+LI LVVKLISTK
Subjt:  GLFVFSLLLWIISSSVTSLIGLVVKLISTK

XP_022959607.1 uncharacterized protein LOC111460632 [Cucurbita moschata]7.2e-3871.54Show/hide
Query:  MGSILIAPPCELNLCSRSRRRRPCLNLKS---AVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILA
        M S+  APP +L L S     RP L+ K+   ++ GVKFH N FPIPSFRYKN KGL+L QRSFSITASNSSDGNSTKE+ DGSK TGDAQGPPFLTILA
Subjt:  MGSILIAPPCELNLCSRSRRRRPCLNLKS---AVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILA

Query:  GLFVFSLLLWIISSSVTSLIGLVVKLISTK
        G FVFSL+LWI+SSSVT+LI L VKLISTK
Subjt:  GLFVFSLLLWIISSSVTSLIGLVVKLISTK

XP_023004845.1 uncharacterized protein LOC111498025 [Cucurbita maxima]8.5e-3973.08Show/hide
Query:  MGSILIAPPCELNLCSRSRRRRPCLNLKS---AVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILA
        M S+  APP +L L S     RP L+ K+   ++ GVKFH N FPIPSFRYKN KGL+L QRSFSITASNSSDGNSTKEE DGSK TGDAQGPPFLTILA
Subjt:  MGSILIAPPCELNLCSRSRRRRPCLNLKS---AVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILA

Query:  GLFVFSLLLWIISSSVTSLIGLVVKLISTK
        G FVFSL+LWI+SSSVT+LI LVVKLISTK
Subjt:  GLFVFSLLLWIISSSVTSLIGLVVKLISTK

XP_023513743.1 uncharacterized protein LOC111778262 isoform X3 [Cucurbita pepo subsp. pepo]5.5e-3872.31Show/hide
Query:  MGSILIAPPCELNLCSRSRRRRPCLNLKS---AVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILA
        M S+  APP +L L S     RP L+ K+   ++ GVKFH N FPIPSFRYKN K L+L QRSFSITASNSSDGNSTKE+KDGSK TGDAQGPPFLTILA
Subjt:  MGSILIAPPCELNLCSRSRRRRPCLNLKS---AVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILA

Query:  GLFVFSLLLWIISSSVTSLIGLVVKLISTK
        G FVFSL+LWI+SSSVT+LI LVVKLISTK
Subjt:  GLFVFSLLLWIISSSVTSLIGLVVKLISTK

TrEMBL top hitse value%identityAlignment
A0A6J1CV15 uncharacterized protein LOC1110150323.1e-3468.22Show/hide
Query:  MGSILIAPPCELNLCSR--SRRRRPCLNLKSAVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILAG
        M SI  APP +LNLCSR  S  RR  L    ++ GVK H + FP+PSFR+++ KGLELSQRSFSITASNSSDGNS KEE     ATGDAQGPPFLTILAG
Subjt:  MGSILIAPPCELNLCSR--SRRRRPCLNLKSAVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILAG

Query:  LFVFSLLLWIISSSVTSLIGLVVKLISTK
         FVFSL++W+ISS+ TSLIGLVVKLI  K
Subjt:  LFVFSLLLWIISSSVTSLIGLVVKLISTK

A0A6J1GPL5 uncharacterized protein LOC1114559841.0e-3771.65Show/hide
Query:  MGSILIAPPCELNLCSRSRRRRPCLNLKSAVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILAGLF
        M SI  APP  LNL SR       + L S++AG+++H NAFPIPSFRY+N KGLEL QRSFSITASNSSDGNS KEE   SKA+ DAQGPPFLTILAG+F
Subjt:  MGSILIAPPCELNLCSRSRRRRPCLNLKSAVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILAGLF

Query:  VFSLLLWIISSSVTSLIGLVVKLISTK
        VFSLLLW++SS+ TSLIGLVVKLISTK
Subjt:  VFSLLLWIISSSVTSLIGLVVKLISTK

A0A6J1H506 uncharacterized protein LOC1114606323.5e-3871.54Show/hide
Query:  MGSILIAPPCELNLCSRSRRRRPCLNLKS---AVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILA
        M S+  APP +L L S     RP L+ K+   ++ GVKFH N FPIPSFRYKN KGL+L QRSFSITASNSSDGNSTKE+ DGSK TGDAQGPPFLTILA
Subjt:  MGSILIAPPCELNLCSRSRRRRPCLNLKS---AVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILA

Query:  GLFVFSLLLWIISSSVTSLIGLVVKLISTK
        G FVFSL+LWI+SSSVT+LI L VKLISTK
Subjt:  GLFVFSLLLWIISSSVTSLIGLVVKLISTK

A0A6J1JUC2 uncharacterized protein LOC1114884361.1e-3670.63Show/hide
Query:  MGSILIAPPCELNLCSRSRRRRPCLNLKSAVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILAGLF
        M SI  APP  LNL SR       + L S++AG+++H NAFPIPSFRY+N KGLELS RSFSITASNSSDGNS +EE   SKA+ DAQGPPFLTILAG+F
Subjt:  MGSILIAPPCELNLCSRSRRRRPCLNLKSAVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILAGLF

Query:  VFSLLLWIISSSVTSLIGLVVKLIST
        VFSLLLW++SS+ TSLIGLVVKLIST
Subjt:  VFSLLLWIISSSVTSLIGLVVKLIST

A0A6J1KVQ7 uncharacterized protein LOC1114980254.1e-3973.08Show/hide
Query:  MGSILIAPPCELNLCSRSRRRRPCLNLKS---AVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILA
        M S+  APP +L L S     RP L+ K+   ++ GVKFH N FPIPSFRYKN KGL+L QRSFSITASNSSDGNSTKEE DGSK TGDAQGPPFLTILA
Subjt:  MGSILIAPPCELNLCSRSRRRRPCLNLKS---AVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILA

Query:  GLFVFSLLLWIISSSVTSLIGLVVKLISTK
        G FVFSL+LWI+SSSVT+LI LVVKLISTK
Subjt:  GLFVFSLLLWIISSSVTSLIGLVVKLISTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCCATCTTGATCGCGCCGCCGTGTGAACTGAATCTCTGTTCTCGCAGTCGCCGCCGTCGTCCATGTTTGAATCTGAAATCCGCCGTCGCCGGCGTTAAATTTCA
TCCCAACGCCTTTCCGATTCCTTCTTTCAGGTACAAGAACATCAAAGGATTGGAATTAAGCCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCA
CCAAGGAGGAAAAGGATGGAAGTAAAGCAACTGGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGACTTTTTGTCTTTTCCCTCCTACTTTGGATAATTAGT
TCTTCTGTCACTTCACTTATAGGTTTAGTTGTCAAGCTGATCTCAACCAAGTAG
mRNA sequenceShow/hide mRNA sequence
TGGTTTGACTGAAGCAAGGTACTTTACTGTTCTCTTCGGTGTTTCAAGGAGTCTCGGAATTTGCTCTCAGGAATGGATTAAGCATCATCCACAGAGAATGGAGTGAACTC
TCATCTCTTCGGAAGCGCCAAAGTCTCTGTAAAGAGTGAAGGCGAATGGGTTCCATCTTGATCGCGCCGCCGTGTGAACTGAATCTCTGTTCTCGCAGTCGCCGCCGTCG
TCCATGTTTGAATCTGAAATCCGCCGTCGCCGGCGTTAAATTTCATCCCAACGCCTTTCCGATTCCTTCTTTCAGGTACAAGAACATCAAAGGATTGGAATTAAGCCAAA
GATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGGAGGAAAAGGATGGAAGTAAAGCAACTGGTGATGCCCAAGGTCCTCCATTTCTTACCATT
TTGGCTGGACTTTTTGTCTTTTCCCTCCTACTTTGGATAATTAGTTCTTCTGTCACTTCACTTATAGGTTTAGTTGTCAAGCTGATCTCAACCAAGTAGTGTAGCATTAT
TGGCATAATTTCATGTTCCATTTAGAAGCTTTAATCAGTGTGGTTCTCTATTCTATCACAACTCACTTTTTAGCCAGTTTTAGCTGATTTCTAGTCAATAGTTTTTATTT
TCATCTCAATTATATGCCCAGCTTCAGCCTTCA
Protein sequenceShow/hide protein sequence
MGSILIAPPCELNLCSRSRRRRPCLNLKSAVAGVKFHPNAFPIPSFRYKNIKGLELSQRSFSITASNSSDGNSTKEEKDGSKATGDAQGPPFLTILAGLFVFSLLLWIIS
SSVTSLIGLVVKLISTK