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Sed0026715 (gene) of Chayote v1 genome

Gene IDSed0026715
OrganismSechium edule (Chayote v1)
Descriptionprotein RADIALIS-like 1
Genome locationLG05:35635266..35637395
RNA-Seq ExpressionSed0026715
SyntenySed0026715
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588435.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]3.1e-3186.08Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGGT
        MASMSSHGS SWTAKQNKAFE+ALA YD+DTP+RWLNVA+AVGGKT EEVK+HY+LLVEDVKFIESGRVPYPYRNSG +
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGGT

XP_022136064.1 protein RADIALIS-like 1 [Momordica charantia]6.9e-3187.18Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGG
        MASMSSHGS +WTAKQNKAFE+ALAVYDQDTP RWLNVAKAVGGKT EEVK+HYELLVEDVKFIESG+V +PYR SGG
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGG

XP_022933530.1 protein RADIALIS-like 1 [Cucurbita moschata]3.1e-3186.08Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGGT
        MASMSSHGS SWTAKQNKAFE+ALA YD+DTP+RWLNVA+AVGGKT EEVK+HY+LLVEDVKFIESGRVPYPYRNSG +
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGGT

XP_022971586.1 protein RADIALIS-like 1 [Cucurbita maxima]1.5e-3084.81Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGGT
        MASMSSHGS SWTAKQNKAFE+ALA YD+D P+RWLNVA+AVGGKT EEVK+HY+LLVEDVKFIESGRVPYPYRNSG +
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGGT

XP_023531686.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]3.1e-3186.08Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGGT
        MASMSSHGS SWTAKQNKAFE+ALA YD+DTP+RWLNVA+AVGGKT EEVK+HY+LLVEDVKFIESGRVPYPYRNSG +
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGGT

TrEMBL top hitse value%identityAlignment
A0A0A0K348 SANT domain-containing protein2.8e-3084.62Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGG
        MASMSSHGS +WT  QNKAFE+ALAVYDQDTP+RWLNVAKAVGGKT EEVK+HY LLVEDVKFIESG+VP+PYR SGG
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGG

A0A5A7SYK4 Protein RADIALIS-like 12.8e-3085.71Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSG
        MASMSSHGS +WT KQNKAFE+ALAVYDQDTP+RWLNVAKAVGGKT EEVK+HY LLVEDVKFIESG+VP+PYR SG
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSG

A0A6J1C385 protein RADIALIS-like 13.4e-3187.18Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGG
        MASMSSHGS +WTAKQNKAFE+ALAVYDQDTP RWLNVAKAVGGKT EEVK+HYELLVEDVKFIESG+V +PYR SGG
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGG

A0A6J1F548 protein RADIALIS-like 11.5e-3186.08Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGGT
        MASMSSHGS SWTAKQNKAFE+ALA YD+DTP+RWLNVA+AVGGKT EEVK+HY+LLVEDVKFIESGRVPYPYRNSG +
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGGT

A0A6J1I3P3 protein RADIALIS-like 17.5e-3184.81Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGGT
        MASMSSHGS SWTAKQNKAFE+ALA YD+D P+RWLNVA+AVGGKT EEVK+HY+LLVEDVKFIESGRVPYPYRNSG +
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGGT

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 14.4e-2876.92Show/hide
Query:  ASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP-YRNSGG
        +SMSS  S SWTAKQNKAFEQALA YDQDTPNRW NVAK VGGKT EEVK+HYELLV+D+  IE+G VP+P YR SGG
Subjt:  ASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP-YRNSGG

Q1A173 Protein RADIALIS-like 66.8e-2168.06Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP
        MAS S      WT  QNK FE+ALAVYD+DTP+RW NVAKAVGGKT EEVK+HY++LVED+  IE+GRVP P
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP

Q58FS3 Transcription factor RADIALIS2.7e-2569.62Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP-YRNSGG
        MAS    G   W+AK+NKAFE+ALAVYD+DTP+RW NVA+AV G+TPEEVKKHYE+LVED+K+IESG+VP+P YR +GG
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP-YRNSGG

Q6NNN0 Protein RADIALIS-like 35.5e-2366.67Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP-YRNSG
        MAS S   S SWT K+NK FE+ALA YDQDTP+RW NVA+AVGGK+ EEV++HYELL+ DV  IESGR P+P YR++G
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP-YRNSG

Q9SIJ5 Protein RADIALIS-like 22.7e-2570.13Show/hide
Query:  SMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP-YRNSGG
        SMSS+GS SWT KQNKAFE+ALAVYDQDTP+RW NVA+AVGGKTPEE K+ Y+LLV D++ IE+G VP+P Y+ + G
Subjt:  SMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP-YRNSGG

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 56.3e-2266.67Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP
        MAS S   S SWT+KQNK FE+ALAVYD+DTP+RW NVAKAVG K+ EEVK+HY++LVED+  IE   VP P
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP

AT1G75250.1 RAD-like 64.8e-2268.06Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP
        MAS S      WT  QNK FE+ALAVYD+DTP+RW NVAKAVGGKT EEVK+HY++LVED+  IE+GRVP P
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP

AT1G75250.2 RAD-like 64.8e-2268.06Show/hide
Query:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP
        MAS S      WT  QNK FE+ALAVYD+DTP+RW NVAKAVGGKT EEVK+HY++LVED+  IE+GRVP P
Subjt:  MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP

AT2G21650.1 Homeodomain-like superfamily protein1.9e-2670.13Show/hide
Query:  SMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP-YRNSGG
        SMSS+GS SWT KQNKAFE+ALAVYDQDTP+RW NVA+AVGGKTPEE K+ Y+LLV D++ IE+G VP+P Y+ + G
Subjt:  SMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP-YRNSGG

AT4G39250.1 RAD-like 13.1e-2976.92Show/hide
Query:  ASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP-YRNSGG
        +SMSS  S SWTAKQNKAFEQALA YDQDTPNRW NVAK VGGKT EEVK+HYELLV+D+  IE+G VP+P YR SGG
Subjt:  ASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYP-YRNSGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTTCTCATGGATCTGATTCATGGACTGCAAAGCAAAACAAGGCCTTTGAGCAGGCTTTGGCAGTGTATGACCAAGACACCCCGAACCGATGGCTCAA
TGTTGCGAAAGCCGTTGGTGGAAAGACGCCAGAGGAGGTTAAAAAACACTATGAGCTTCTTGTGGAAGATGTCAAGTTTATAGAATCTGGCCGAGTTCCTTACCCGTATC
GAAACTCCGGAGGCACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCTTCTCATGGATCTGATTCATGGACTGCAAAGCAAAACAAGGCCTTTGAGCAGGCTTTGGCAGTGTATGACCAAGACACCCCGAACCGATGGCTCAA
TGTTGCGAAAGCCGTTGGTGGAAAGACGCCAGAGGAGGTTAAAAAACACTATGAGCTTCTTGTGGAAGATGTCAAGTTTATAGAATCTGGCCGAGTTCCTTACCCGTATC
GAAACTCCGGAGGCACCTAA
Protein sequenceShow/hide protein sequence
MASMSSHGSDSWTAKQNKAFEQALAVYDQDTPNRWLNVAKAVGGKTPEEVKKHYELLVEDVKFIESGRVPYPYRNSGGT