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Sed0026745 (gene) of Chayote v1 genome

Gene IDSed0026745
OrganismSechium edule (Chayote v1)
DescriptionCalcium-binding EF-hand family protein
Genome locationLG13:22366917..22367440
RNA-Seq ExpressionSed0026745
SyntenySed0026745
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591370.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]8.0e-3180.46Show/hide
Query:  SRKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYT
        +RKSK Y  R KLSREQLS+IFRNHDGDGDGRLS  ELT AFRYIGA LPS+RA HAL HTDSD DGFIGEK+FE L+NYAEKRKYT
Subjt:  SRKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYT

KAG6600743.1 Calcium-binding protein CML38, partial [Cucurbita argyrosperma subsp. sororia]9.8e-2975Show/hide
Query:  RKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTII
        RK+K Y QR K+SR+QL +IFRNHD DGDGRLS  ELT+AF YIGALLPSFRA HAL +TDSDRDGFI EK+FE LI+YAEKR+YT+I
Subjt:  RKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTII

KAG6608481.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]6.5e-3379.78Show/hide
Query:  SRKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTII
        +RK+K    R KLSREQLS+IFRNHDGDGDGRLS  ELTEAFRYIGA LPS+RAHHALR+TDSDRDGFIGEK+FESL+NY EKR YTI+
Subjt:  SRKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTII

KAG7024248.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-3179.78Show/hide
Query:  SRKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTII
        +RKSK Y  R KLSREQLS+IFRNHDGDGDGRLS  ELT AFRYIGA LPS+RA HAL HTDSD DGFIGEK+FE L+NYAEKRKYT+I
Subjt:  SRKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTII

KGN55185.1 hypothetical protein Csa_012915 [Cucumis sativus]4.7e-3179.78Show/hide
Query:  SRKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTII
        SRKSK Y  RAKLSREQL LIFRNHD D DGRLS  ELTEAFRYIGA LP++RA HAL H DSDRDGFIGEK+FESL+NYAE+R+YTII
Subjt:  SRKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTII

TrEMBL top hitse value%identityAlignment
A0A0A0KZR6 Uncharacterized protein2.3e-3179.78Show/hide
Query:  SRKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTII
        SRKSK Y  RAKLSREQL LIFRNHD D DGRLS  ELTEAFRYIGA LP++RA HAL H DSDRDGFIGEK+FESL+NYAE+R+YTII
Subjt:  SRKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTII

A0A438DYH7 Uncharacterized protein1.5e-1448.78Show/hide
Query:  KFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKY
        K  P ++ L  +QL  IF+ HD +GDG+L+  EL +AF+++GAL+P +RAH AL H D+D DG I EKE + L+ YA K  Y
Subjt:  KFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKY

A0A5A7VDB9 Putative calcium-binding protein CML274.7e-2974.16Show/hide
Query:  SRKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTII
        SR+SK Y  RA+LSREQL LIFRNHD D DGRLS  ELTEAFRYIGA LP +RA HAL H DSDRDGFI EK+FE L+NYAE+R+YT+I
Subjt:  SRKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTII

A0A5N6RQV2 Uncharacterized protein4.3e-1447.78Show/hide
Query:  MASRKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTI
        M    + F P     +R+QL  IFR+HD DGDG+LS +E+  AF Y+G+   S+RA  AL H DSD DG++GE+E + L++YA K  YTI
Subjt:  MASRKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTI

A5AWP8 Uncharacterized protein1.3e-1550Show/hide
Query:  KFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTI
        K  P ++ L  +QL  IF+ HD +GDG+L+  EL +AF+++GAL+P +RAH AL H D+D DG I EKE + L+ YA K  YTI
Subjt:  KFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTI

SwissProt top hitse value%identityAlignment
Q0DJV6 Probable calcium-binding protein CML185.4e-0639.66Show/hide
Query:  QLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEF
        +L  +FR +D +GDG++S  EL    R +GA L        +   DSDRDGF+   EF
Subjt:  QLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEF

Q39419 Polcalcin Bet v 43.5e-0539.68Show/hide
Query:  KLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEF
        K  RE+   IF+  D +GDG++S  EL EA + +G++ P     H +   D+D DGFI  +EF
Subjt:  KLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEF

Q8L3R2 Probable calcium-binding protein CML419.3e-0635.38Show/hide
Query:  SREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLI
        S+E+L  +F + D DGDG++S  EL   F  +G  +    A  A+   D+D DG +G ++F  L+
Subjt:  SREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLI

Q9LE22 Probable calcium-binding protein CML271.6e-0537.1Show/hide
Query:  EQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESL
        E+L  +F   D +GDG++SV EL   F+ +G        +  L   D+DRDG+I   EF +L
Subjt:  EQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESL

Q9NZT1 Calmodulin-like protein 52.7e-0534.29Show/hide
Query:  QRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLI
        ++A+   E L + FR  D DGDG ++V EL  A   +G  LP       +R  D D+DG +  +EF  ++
Subjt:  QRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLI

Arabidopsis top hitse value%identityAlignment
AT1G18210.1 Calcium-binding EF-hand family protein1.1e-0637.1Show/hide
Query:  EQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESL
        E+L  +F   D +GDG++SV EL   F+ +G        +  L   D+DRDG+I   EF +L
Subjt:  EQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESL

AT1G18210.2 Calcium-binding EF-hand family protein1.1e-0637.1Show/hide
Query:  EQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESL
        E+L  +F   D +GDG++SV EL   F+ +G        +  L   D+DRDG+I   EF +L
Subjt:  EQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESL

AT1G73630.1 EF hand calcium-binding protein family1.6e-0534.43Show/hide
Query:  QLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESL
        +L  +F   D +GDG++SV EL   F+ +G        +  L   D D DGFI ++EF ++
Subjt:  QLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESL

AT3G50770.1 calmodulin-like 416.6e-0735.38Show/hide
Query:  SREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLI
        S+E+L  +F + D DGDG++S  EL   F  +G  +    A  A+   D+D DG +G ++F  L+
Subjt:  SREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLI

AT4G03290.1 EF hand calcium-binding protein family1.2e-0531.15Show/hide
Query:  QLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESL
        +L+ +F+  D DGDG+++ +EL E+F+ +G ++P       ++  D + DG +  +EF  L
Subjt:  QLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAGGAAAAGCAAGTTCTACCCTCAAAGAGCAAAGCTATCTCGAGAGCAACTAAGCTTAATATTCCGAAACCACGATGGCGATGGTGATGGCCGCTTGAGCGT
AAGGGAGCTCACCGAAGCCTTCCGGTATATCGGTGCCCTTCTCCCATCGTTCCGAGCTCATCATGCTCTTCGTCACACCGATTCCGATAGAGACGGATTCATCGGTGAGA
AGGAGTTCGAATCGCTCATCAATTATGCCGAGAAACGAAAATACACCATCATTTGA
mRNA sequenceShow/hide mRNA sequence
GTAAAAAATAAAACAGATTCAACTGCGATGGCATCAAGGAAAAGCAAGTTCTACCCTCAAAGAGCAAAGCTATCTCGAGAGCAACTAAGCTTAATATTCCGAAACCACGA
TGGCGATGGTGATGGCCGCTTGAGCGTAAGGGAGCTCACCGAAGCCTTCCGGTATATCGGTGCCCTTCTCCCATCGTTCCGAGCTCATCATGCTCTTCGTCACACCGATT
CCGATAGAGACGGATTCATCGGTGAGAAGGAGTTCGAATCGCTCATCAATTATGCCGAGAAACGAAAATACACCATCATTTGAAGTCGAGGATTCTCTTGAACTCTTTGT
TTTCTATATTTAACTGAAAAAAAAATGGTGAGAGTAGAAATTCTCGTGTATGATCGGAATCAGCTGCTTATAACTGTTTCACAAATAAAAGGACAGTTCTTTGTATTAGT
TTAAGAACAAAAAAAAGATAATGTTGATGTTCATCGTTTGATGCTACATGTTTTTTTTCCCCTTTCTGTTTGTTTGTCTTCATT
Protein sequenceShow/hide protein sequence
MASRKSKFYPQRAKLSREQLSLIFRNHDGDGDGRLSVRELTEAFRYIGALLPSFRAHHALRHTDSDRDGFIGEKEFESLINYAEKRKYTII