CuGenDBv2

Gene ID	Sed0026756
Organism	Sechium edule (Chayote v1)
Description	Usher syndrome type-1C-binding protein 1
Genome location	LG07:5789096..5791354
RNA-Seq Expression	Sed0026756
Synteny	Sed0026756
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593392.1 hypothetical protein SDJN03_12868, partial [Cucurbita argyrosperma subsp. sororia]

3.7e-45

75.76

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Query:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ
        MA  SLS+S+ L +H  ++VTA AIA+P  SSFHAPPEI FSP++  RSSLLL SN CAKS VC+AAVRPPPDS PPP++DP+ LKGFP   SKFGDRVQ
Subjt:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ

Query:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
        IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
Subjt:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR

XP_022959617.1 uncharacterized protein LOC111460643 isoform X1 [Cucurbita moschata]

9.1e-44

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Query:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ
        MA  SLS+S+ L +H  ++VTA AIA+P  SSFHAPPEI FSP++  RSSLLL SN  AKS VC+AAVRPPPDS PPP++DP+ LKGFP   SKFGDRVQ
Subjt:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ

Query:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
        IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
Subjt:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR

XP_023004358.1 uncharacterized protein LOC111497700 isoform X1 [Cucurbita maxima]

3.1e-44

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Query:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLLS-NLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ
        MA+ SLS+S+ L +H  ++VTA AIA+P  SSFHA PEI FSP++  RSSLLLS N CAKS VC+AAVRPPPDS PPP++DP+ LKGFP   SKFGDRVQ
Subjt:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLLS-NLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ

Query:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
        IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
Subjt:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR

XP_023513765.1 uncharacterized protein LOC111778275 isoform X1 [Cucurbita pepo subsp. pepo]

4.1e-44

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Query:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ
        MA+ SLS+S+ L +H  ++VTA AIA+P  SSFHAPPEI FSP++  RSSLLL SN CAKS VC AAVRPPPDS PPP++DP+ LKGF    SKFGDRVQ
Subjt:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ

Query:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
        IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
Subjt:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR

XP_038899182.1 uncharacterized protein LOC120086544 [Benincasa hispida]

1.1e-41

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Query:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ
        MATLSL       H S QSVTAS+IAVP  S+FHA PEI FS   R  S LLL S+ C KS VCSAAVRPPPDS PPPE+DP+ LKGFP  LSKF DRVQ
Subjt:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ

Query:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
        IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
Subjt:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K8T0 Uncharacterized protein

3.2e-34

66.67

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Query:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ
        MA LS S      H S QSV AS+IA+P  S+FH   EI FS   R  S L   SN  A+S VCSAAVRPPPDS PPPE+DPV L G P   SKF DRVQ
Subjt:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ

Query:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
        IF AVLFWMSLFFWTSALDG+NRPNKGSRFRR
Subjt:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR

A0A1S3CE06 uncharacterized protein LOC103499798

2.9e-35

70.59

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Query:  HHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQIFFAVLFWMSLFF
        H S  SV AS+IA+P  S+FH   +I FSP  R  S L   SN  AKS VCSAAVRPPPDS PPPE+DPV L G P   SKF DRVQIF AVLFWMSLFF
Subjt:  HHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQIFFAVLFWMSLFF

Query:  WTSALDGKNRPNKGSRFRR
        WTSALDGKNRPNKGSRFRR
Subjt:  WTSALDGKNRPNKGSRFRR

A0A6J1CXJ1 uncharacterized protein LOC111015178

2.3e-40

75.63

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Query:  HHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQIFFAVLFWMSLFF
        +HS  S+TAS IAVP  S F  PPEI FS  +R RSSLLL SN  A S  CSAAVRPPPDSGPPP+KDP+  KGFP F SKF DRVQIFFAVLFWMSLFF
Subjt:  HHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQIFFAVLFWMSLFF

Query:  WTSALDGKNRPNKGSRFRR
        WTS LDGKNRPNKGSRFRR
Subjt:  WTSALDGKNRPNKGSRFRR

A0A6J1H516 uncharacterized protein LOC111460643 isoform X1

4.4e-44

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Query:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ
        MA  SLS+S+ L +H  ++VTA AIA+P  SSFHAPPEI FSP++  RSSLLL SN  AKS VC+AAVRPPPDS PPP++DP+ LKGFP   SKFGDRVQ
Subjt:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLL-SNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ

Query:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
        IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
Subjt:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR

A0A6J1KZ93 uncharacterized protein LOC111497700 isoform X1

1.5e-44

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Query:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLLS-NLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ
        MA+ SLS+S+ L +H  ++VTA AIA+P  SSFHA PEI FSP++  RSSLLLS N CAKS VC+AAVRPPPDS PPP++DP+ LKGFP   SKFGDRVQ
Subjt:  MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLLS-NLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQ

Query:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
        IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR
Subjt:  IFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G52550.1 unknown protein

2.3e-08

38.26

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Query:  RSSFHAPPEILFSPINRHRSSLLLSN----LCAKSTVCSAAVRP-----PPDSGPPPEKDPVPLKGFPVFLSKFGDRVQIFFAVLFWMSLFFWTSALDGK
        R +   P    FSP    RSS L S     +     V   AV P     PP   PPP K+   L       S   DRV+IF +VL W+SLFFW SAL G+
Subjt:  RSSFHAPPEILFSPINRHRSSLLLSN----LCAKSTVCSAAVRP-----PPDSGPPPEKDPVPLKGFPVFLSKFGDRVQIFFAVLFWMSLFFWTSALDGK

Query:  -----NRPNKGSRFR
              +  KGSRF+
Subjt:  -----NRPNKGSRFR

AT3G15780.1 unknown protein

1.8e-10

36.21

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Query:  ASAIAVPRRSS--FHAPPEILFSP---INRHRSSLLLSNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQIFFAVLFWMSLFFWTSA
        A A++ P  S+  +H      FSP   ++R  + LL S    +    +     PP   PPP +D   L+G    +++  DRV+IF AV FWM LFFW + 
Subjt:  ASAIAVPRRSS--FHAPPEILFSP---INRHRSSLLLSNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQIFFAVLFWMSLFFWTSA

Query:  LD--GKNRPNKGSRFR
         D  GK +  KGSRF+
Subjt:  LD--GKNRPNKGSRFR

Sequences

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CDS sequence

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ATGGCGACGCTTTCTCTCTCCTCTTCAAGCTTTCTCCGCCACCATTCTCCACAGTCCGTCACCGCCTCTGCAATCGCCGTTCCTCGCCGGTCAAGCTTCCATGCTCCGCC
GGAAATTCTCTTCTCTCCGATCAATCGCCACCGTTCATCTCTCTTGCTCTCCAATTTATGCGCTAAATCCACGGTTTGCAGCGCAGCAGTACGGCCGCCGCCGGACTCCG
GTCCACCTCCTGAGAAGGATCCTGTTCCTCTAAAAGGTTTTCCAGTATTTTTATCAAAATTTGGAGACAGAGTACAGATTTTCTTTGCTGTGTTATTCTGGATGTCCCTC
TTCTTCTGGACTTCTGCATTGGATGGAAAAAATAGGCCTAACAAGGGCTCTCGATTTAGACGGTAG

mRNA sequence

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CTTCTCTCTCCTCACAATGGCGACGCTTTCTCTCTCCTCTTCAAGCTTTCTCCGCCACCATTCTCCACAGTCCGTCACCGCCTCTGCAATCGCCGTTCCTCGCCGGTCAA
GCTTCCATGCTCCGCCGGAAATTCTCTTCTCTCCGATCAATCGCCACCGTTCATCTCTCTTGCTCTCCAATTTATGCGCTAAATCCACGGTTTGCAGCGCAGCAGTACGG
CCGCCGCCGGACTCCGGTCCACCTCCTGAGAAGGATCCTGTTCCTCTAAAAGGTTTTCCAGTATTTTTATCAAAATTTGGAGACAGAGTACAGATTTTCTTTGCTGTGTT
ATTCTGGATGTCCCTCTTCTTCTGGACTTCTGCATTGGATGGAAAAAATAGGCCTAACAAGGGCTCTCGATTTAGACGGTAGTTTTGTAAATAAAAAAATTCATTATTTT
GTAAAGTGTTGCAGGTTAATATATAAGTTACTGTTAGGCTACTTGATTATAATTTATGGTATATAGACAGCCTTAAACGAGGTAGATATAGCTCTATTAGATGTTGATAT
CAAAAGTATACTGTCACGGAAAGTCGTTTTCTGTATCACATTCTTCTATTCAAGCTTCTTAACATTTCCTGGATCCTAGTCTGATTATTTTTATATCCGTCG

Protein sequence

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MATLSLSSSSFLRHHSPQSVTASAIAVPRRSSFHAPPEILFSPINRHRSSLLLSNLCAKSTVCSAAVRPPPDSGPPPEKDPVPLKGFPVFLSKFGDRVQIFFAVLFWMSL
FFWTSALDGKNRPNKGSRFRR

Sed0026756 (gene) of Chayote v1 genome