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Sed0026758 (gene) of Chayote v1 genome

Gene IDSed0026758
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG01:28094710..28097275
RNA-Seq ExpressionSed0026758
SyntenySed0026758
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7153765.1 hypothetical protein RHSIM_Rhsim01G0020300 [Rhododendron simsii]2.7e-0745.83Show/hide
Query:  IKFPSFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE
        IK    +  +++  + +    KAYRAKR A+DKV GS+A+QY  LW+YC+ELR SN GST  +K  V+  +E
Subjt:  IKFPSFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE

KAG5541483.1 hypothetical protein RHGRI_021341 [Rhododendron griersonianum]1.6e-0747.22Show/hide
Query:  IKFPSFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE
        IK    +  +++  + +    KAYRAKR ALDKV GS+A+QY  LW+YC+ELR SN GST  +K  V+  +E
Subjt:  IKFPSFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE

XP_008231432.1 PREDICTED: uncharacterized protein LOC103330614 [Prunus mume]8.7e-0644.93Show/hide
Query:  KSKIKFP--SFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVK
        KS  ++P  SFK  +E++  T     + YRAK  AL  + GS+ +QY ++W+YC ELR SN G+TT+VK
Subjt:  KSKIKFP--SFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVK

XP_022153708.1 uncharacterized protein LOC111021158 [Momordica charantia]5.6e-2931.36Show/hide
Query:  MALFVVVVHHSGVFVDEPNIRYVSGNMDYFFYYDSKSWSLFKCIKLVESLGYAANYFTLWGRDPTMHVGGYNILESNDHVEALTSLLSDGMPFEVFVEHE
        M  FVV VHH+G F+ EP I+Y+SG +D +  +D   WS F+ I +VE LGY  +Y  LWGRDPT  VGGY ++ES+  V  L SLLSDGM FE++VEHE
Subjt:  MALFVVVVHHSGVFVDEPNIRYVSGNMDYFFYYDSKSWSLFKCIKLVESLGYAANYFTLWGRDPTMHVGGYNILESNDHVEALTSLLSDGMPFEVFVEHE

Query:  VDDGLSDDESYNLDN---YCGHVGGNTSDFETEECRLV-----KWSERNSRELEVDIGSD---------IDIDSKELHSLDDSSDS--DQRCKSKI----
              +DE+  LDN      ++ G  S+FE ++  L      K  E  + +    IG D          DIDS EL SL DSSDS  D R K  +    
Subjt:  VDDGLSDDESYNLDN---YCGHVGGNTSDFETEECRLV-----KWSERNSRELEVDIGSD---------IDIDSKELHSLDDSSDS--DQRCKSKI----

Query:  ---KFPSFKHNMEENTMTNFE----------------------------------------------------IG-------------------------
           + P F+  M  N++  F+                                                    +G                         
Subjt:  ---KFPSFKHNMEENTMTNFE----------------------------------------------------IG-------------------------

Query:  ---------------------------KAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE--DGNHINSLI
                                   KA+RAK+LALD V GS+ +Q   LWEYC E+  SN GS+ ++   V +E E  DG  I  +I
Subjt:  ---------------------------KAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE--DGNHINSLI

XP_023885703.1 uncharacterized protein LOC111997793 [Quercus suber]8.7e-0642.03Show/hide
Query:  RCKSKIKFPSFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVK
        R +  IKF   +  + E  M N  +GK  RA+  A D V G++  Q+ QLWEYC+ELR  + GST ++K
Subjt:  RCKSKIKFPSFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVK

TrEMBL top hitse value%identityAlignment
A0A2N9G7H5 Uncharacterized protein5.0e-0743.06Show/hide
Query:  IKFPSFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE
        IK  S +  + +  +T+    KAYRAK  A+D + GS+ +QY  LW+YC ELR SN GST ++K +   E E
Subjt:  IKFPSFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE

A0A2N9GPL9 Uncharacterized protein5.0e-0743.06Show/hide
Query:  IKFPSFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE
        IK  S +  + +  +T+    KAYRAK  A+D + GS+ +QY  LW+YC ELR SN GST ++K +   E E
Subjt:  IKFPSFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE

A0A2N9INA2 Uncharacterized protein2.2e-0743.06Show/hide
Query:  IKFPSFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE
        IK  S ++ + +  +T+    KAYRAK  A+D + GS+ +QY  LW+YC ELR SN GST ++K +   E E
Subjt:  IKFPSFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE

A0A2N9J6K6 DBD_Tnp_Mut domain-containing protein7.7e-0844.44Show/hide
Query:  IKFPSFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE
        IK  S ++ M +  +T+    KAYRAK  A+D + GS+ +QY  LW+YC ELR SN GST ++K +   E E
Subjt:  IKFPSFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE

A0A6J1DI69 uncharacterized protein LOC1110211582.7e-2931.36Show/hide
Query:  MALFVVVVHHSGVFVDEPNIRYVSGNMDYFFYYDSKSWSLFKCIKLVESLGYAANYFTLWGRDPTMHVGGYNILESNDHVEALTSLLSDGMPFEVFVEHE
        M  FVV VHH+G F+ EP I+Y+SG +D +  +D   WS F+ I +VE LGY  +Y  LWGRDPT  VGGY ++ES+  V  L SLLSDGM FE++VEHE
Subjt:  MALFVVVVHHSGVFVDEPNIRYVSGNMDYFFYYDSKSWSLFKCIKLVESLGYAANYFTLWGRDPTMHVGGYNILESNDHVEALTSLLSDGMPFEVFVEHE

Query:  VDDGLSDDESYNLDN---YCGHVGGNTSDFETEECRLV-----KWSERNSRELEVDIGSD---------IDIDSKELHSLDDSSDS--DQRCKSKI----
              +DE+  LDN      ++ G  S+FE ++  L      K  E  + +    IG D          DIDS EL SL DSSDS  D R K  +    
Subjt:  VDDGLSDDESYNLDN---YCGHVGGNTSDFETEECRLV-----KWSERNSRELEVDIGSD---------IDIDSKELHSLDDSSDS--DQRCKSKI----

Query:  ---KFPSFKHNMEENTMTNFE----------------------------------------------------IG-------------------------
           + P F+  M  N++  F+                                                    +G                         
Subjt:  ---KFPSFKHNMEENTMTNFE----------------------------------------------------IG-------------------------

Query:  ---------------------------KAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE--DGNHINSLI
                                   KA+RAK+LALD V GS+ +Q   LWEYC E+  SN GS+ ++   V +E E  DG  I  +I
Subjt:  ---------------------------KAYRAKRLALDKVRGSYAQQYGQLWEYCNELRTSNSGSTTIVKFKVSEEDE--DGNHINSLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTGTTTGTAGTTGTTGTACATCATAGTGGGGTATTTGTTGACGAGCCAAATATTAGATATGTATCAGGAAACATGGATTACTTTTTTTATTATGATTCAAAATC
GTGGTCATTGTTCAAATGCATCAAACTGGTTGAGAGTCTTGGTTATGCTGCCAATTATTTTACATTATGGGGAAGAGATCCTACGATGCATGTTGGTGGCTATAATATTT
TAGAAAGTAATGATCATGTAGAGGCATTGACAAGTCTATTAAGCGATGGAATGCCTTTTGAAGTATTCGTAGAACACGAAGTAGATGATGGCTTGTCAGATGATGAAAGT
TATAATTTAGATAATTATTGTGGGCATGTGGGTGGCAATACGAGTGATTTTGAAACAGAAGAATGTAGACTCGTAAAATGGAGTGAGAGAAACTCTAGGGAGCTGGAGGT
AGATATTGGAAGTGATATAGACATAGATTCTAAAGAACTGCACTCATTAGATGATTCATCTGATTCAGACCAAAGATGCAAGAGTAAGATAAAGTTTCCATCTTTCAAGC
ATAACATGGAGGAAAACACCATGACCAACTTTGAAATTGGTAAGGCTTATAGAGCCAAACGTCTTGCATTAGACAAAGTCCGTGGTTCATACGCTCAACAATATGGCCAA
TTATGGGAGTATTGTAATGAACTACGTACTTCAAATTCAGGTAGCACTACAATTGTGAAATTCAAAGTTTCTGAGGAAGATGAGGATGGAAACCACATCAACTCATTGAT
CGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTGTTTGTAGTTGTTGTACATCATAGTGGGGTATTTGTTGACGAGCCAAATATTAGATATGTATCAGGAAACATGGATTACTTTTTTTATTATGATTCAAAATC
GTGGTCATTGTTCAAATGCATCAAACTGGTTGAGAGTCTTGGTTATGCTGCCAATTATTTTACATTATGGGGAAGAGATCCTACGATGCATGTTGGTGGCTATAATATTT
TAGAAAGTAATGATCATGTAGAGGCATTGACAAGTCTATTAAGCGATGGAATGCCTTTTGAAGTATTCGTAGAACACGAAGTAGATGATGGCTTGTCAGATGATGAAAGT
TATAATTTAGATAATTATTGTGGGCATGTGGGTGGCAATACGAGTGATTTTGAAACAGAAGAATGTAGACTCGTAAAATGGAGTGAGAGAAACTCTAGGGAGCTGGAGGT
AGATATTGGAAGTGATATAGACATAGATTCTAAAGAACTGCACTCATTAGATGATTCATCTGATTCAGACCAAAGATGCAAGAGTAAGATAAAGTTTCCATCTTTCAAGC
ATAACATGGAGGAAAACACCATGACCAACTTTGAAATTGGTAAGGCTTATAGAGCCAAACGTCTTGCATTAGACAAAGTCCGTGGTTCATACGCTCAACAATATGGCCAA
TTATGGGAGTATTGTAATGAACTACGTACTTCAAATTCAGGTAGCACTACAATTGTGAAATTCAAAGTTTCTGAGGAAGATGAGGATGGAAACCACATCAACTCATTGAT
CGACTGA
Protein sequenceShow/hide protein sequence
MALFVVVVHHSGVFVDEPNIRYVSGNMDYFFYYDSKSWSLFKCIKLVESLGYAANYFTLWGRDPTMHVGGYNILESNDHVEALTSLLSDGMPFEVFVEHEVDDGLSDDES
YNLDNYCGHVGGNTSDFETEECRLVKWSERNSRELEVDIGSDIDIDSKELHSLDDSSDSDQRCKSKIKFPSFKHNMEENTMTNFEIGKAYRAKRLALDKVRGSYAQQYGQ
LWEYCNELRTSNSGSTTIVKFKVSEEDEDGNHINSLID