CuGenDBv2

Gene ID	Sed0026789
Organism	Sechium edule (Chayote v1)
Description	Transmembrane protein
Genome location	LG07:912474..915767
RNA-Seq Expression	Sed0026789
Synteny	Sed0026789
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7025375.1 hypothetical protein SDJN02_11870 [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-47

77.78

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Query:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI-SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMV
        M+SR +ED  SGVGVL E+SSLLLKILRSPPPPV FSDHVLEL+SVI SSSSR LPSSQ+T AGFA LLLGIS ALMLCGSV FFLGFILMPWILV AM+
Subjt:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI-SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMV

Query:  FYLVGVVSSLSMLGRSLLCCFTAPTPRKDFNA--NFWTGIFSFD
        FY+VG+VSSLSMLGRS+LCC TAP PRKDFN     + GI  FD
Subjt:  FYLVGVVSSLSMLGRSLLCCFTAPTPRKDFNA--NFWTGIFSFD

XP_022155438.1 uncharacterized protein LOC111022584 isoform X1 [Momordica charantia]

6.6e-47

79.85

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Query:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVISSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMVF
        M+ R RED  S   VL EISSLL+KILRSPPPPVPFSDHVLEL+SVISSSS  LPSSQ+TPAG A LLLGIS ALMLCGSV FFLGF+LMPWILVL M+F
Subjt:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVISSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMVF

Query:  YLVGVVSSLSMLGRSLLCCFTAPTPRKDFNANFW
        Y+VG+VSSLSMLGRS+LCCF+APTPRKDFNA F+
Subjt:  YLVGVVSSLSMLGRSLLCCFTAPTPRKDFNANFW

XP_022960441.1 uncharacterized protein LOC111461173 [Cucurbita moschata]

1.0e-47

82.58

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Query:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI-SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMV
        M+SR +ED  SGVGVL E+SSLLLKILRSPPPPV FSDHVLEL+SVI SSSSR LPSSQ+T AGFA LLLGIS ALMLCGSV FFLGFILMPWILV AM+
Subjt:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI-SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMV

Query:  FYLVGVVSSLSMLGRSLLCCFTAPTPRKDFNA
        FY+VG+VSSLSMLGRS+LCC TAP PRKDFNA
Subjt:  FYLVGVVSSLSMLGRSLLCCFTAPTPRKDFNA

XP_023004228.1 uncharacterized protein LOC111497622 [Cucurbita maxima]

1.7e-47

81.82

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Query:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI-SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMV
        M+SR +ED  SGV +L E+SSLLLKILRSPPPPVPFSDHVLEL+SVI SSSSR LPSSQ+T AGFA LLLGIS ALMLCGSV FFLGFILMPWILV AM+
Subjt:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI-SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMV

Query:  FYLVGVVSSLSMLGRSLLCCFTAPTPRKDFNA
        FY+VG+VSSLSMLGRS+LCC TAP PRKDFNA
Subjt:  FYLVGVVSSLSMLGRSLLCCFTAPTPRKDFNA

XP_023515244.1 uncharacterized protein LOC111779335 [Cucurbita pepo subsp. pepo]

1.2e-48

83.33

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Query:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI-SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMV
        M+SR +ED  SGVGVL E+SSLLLKILRSPPPPVPFSDHVLEL+SVI SSSSR LPSSQ+T AGFA LLLGIS ALMLCGSV FFLGFILMPWILV AM+
Subjt:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI-SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMV

Query:  FYLVGVVSSLSMLGRSLLCCFTAPTPRKDFNA
        FY+VG+VSSLSMLGRS+LCC TAP PRKDFNA
Subjt:  FYLVGVVSSLSMLGRSLLCCFTAPTPRKDFNA

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DMF9 uncharacterized protein LOC111022584 isoform X2

1.2e-46

76.98

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Query:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVISSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMVF
        M+ R RED  S   VL EISSLL+KILRSPPPPVPFSDHVLEL+SVISSSS  LPSSQ+TPAG A LLLGIS ALMLCGSV FFLGF+LMPWILVL M+F
Subjt:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVISSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMVF

Query:  YLVGVVSSLSMLGRSLLCCFTAPTPRKDFNANFWTGIFS
        Y+VG+VSSLSMLGRS+LCCF+APTPRKDFN  +  G  S
Subjt:  YLVGVVSSLSMLGRSLLCCFTAPTPRKDFNANFWTGIFS

A0A6J1DMY8 uncharacterized protein LOC111022584 isoform X1

3.2e-47

79.85

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Query:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVISSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMVF
        M+ R RED  S   VL EISSLL+KILRSPPPPVPFSDHVLEL+SVISSSS  LPSSQ+TPAG A LLLGIS ALMLCGSV FFLGF+LMPWILVL M+F
Subjt:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVISSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMVF

Query:  YLVGVVSSLSMLGRSLLCCFTAPTPRKDFNANFW
        Y+VG+VSSLSMLGRS+LCCF+APTPRKDFNA F+
Subjt:  YLVGVVSSLSMLGRSLLCCFTAPTPRKDFNANFW

A0A6J1DRN9 uncharacterized protein LOC111022584 isoform X3

1.6e-46

80.92

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Query:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVISSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMVF
        M+ R RED  S   VL EISSLL+KILRSPPPPVPFSDHVLEL+SVISSSS  LPSSQ+TPAG A LLLGIS ALMLCGSV FFLGF+LMPWILVL M+F
Subjt:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVISSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMVF

Query:  YLVGVVSSLSMLGRSLLCCFTAPTPRKDFNA
        Y+VG+VSSLSMLGRS+LCCF+APTPRKDFNA
Subjt:  YLVGVVSSLSMLGRSLLCCFTAPTPRKDFNA

A0A6J1H7L5 uncharacterized protein LOC111461173

4.9e-48

82.58

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Query:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI-SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMV
        M+SR +ED  SGVGVL E+SSLLLKILRSPPPPV FSDHVLEL+SVI SSSSR LPSSQ+T AGFA LLLGIS ALMLCGSV FFLGFILMPWILV AM+
Subjt:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI-SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMV

Query:  FYLVGVVSSLSMLGRSLLCCFTAPTPRKDFNA
        FY+VG+VSSLSMLGRS+LCC TAP PRKDFNA
Subjt:  FYLVGVVSSLSMLGRSLLCCFTAPTPRKDFNA

A0A6J1KYV0 uncharacterized protein LOC111497622

8.4e-48

81.82

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Query:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI-SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMV
        M+SR +ED  SGV +L E+SSLLLKILRSPPPPVPFSDHVLEL+SVI SSSSR LPSSQ+T AGFA LLLGIS ALMLCGSV FFLGFILMPWILV AM+
Subjt:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI-SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMV

Query:  FYLVGVVSSLSMLGRSLLCCFTAPTPRKDFNA
        FY+VG+VSSLSMLGRS+LCC TAP PRKDFNA
Subjt:  FYLVGVVSSLSMLGRSLLCCFTAPTPRKDFNA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G27290.1 unknown protein

3.8e-24

49.63

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Query:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI---------SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMP
        M+ R+R++  S   V  ++SSL+L +LRSPP P+   DH  +  + I         SSSS +L  + ++P+GFA LLLGIS ALMLCGSV FF+GF+LMP
Subjt:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI---------SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMP

Query:  WILVLAMVFYLVGVVSSLSMLGRSLLC-CFTAPTP
        W+L L +VFY+ G+VS++SM+GRS+LC   T P+P
Subjt:  WILVLAMVFYLVGVVSSLSMLGRSLLC-CFTAPTP

AT1G27290.2 unknown protein

3.8e-24

49.63

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Query:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI---------SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMP
        M+ R+R++  S   V  ++SSL+L +LRSPP P+   DH  +  + I         SSSS +L  + ++P+GFA LLLGIS ALMLCGSV FF+GF+LMP
Subjt:  MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVI---------SSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMP

Query:  WILVLAMVFYLVGVVSSLSMLGRSLLC-CFTAPTP
        W+L L +VFY+ G+VS++SM+GRS+LC   T P+P
Subjt:  WILVLAMVFYLVGVVSSLSMLGRSLLC-CFTAPTP

Sequences

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CDS sequence

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ATGATTAGCCGGCGTCGAGAAGATTTACCATCTGGGGTTGGAGTTTTGGATGAGATTTCGTCTCTGCTTTTGAAAATTCTCCGATCGCCGCCGCCGCCGGTGCCATTTTC
CGATCATGTTCTTGAATTGACTTCCGTCATTTCGTCGTCGTCTAGAACTCTCCCTTCTTCCCAGTTGACGCCGGCTGGATTTGCATTTCTGCTTTTGGGGATTTCGTTTG
CTTTGATGCTCTGTGGATCGGTTGCTTTCTTCCTTGGCTTCATTTTGATGCCTTGGATTCTTGTTTTGGCGATGGTTTTCTATTTGGTTGGGGTCGTTTCTAGCCTCTCC
ATGTTGGGTCGATCTTTGCTTTGTTGCTTCACAGCTCCAACGCCTCGTAAAGATTTTAATGCCAATTTTTGGACAGGGATTTTTTCTTTTGATAATCAAAAAATCGGAAA
TACCCACCACCACTACGTACTTGGAGGTACCCACACAAGTCTGAAGTCCGGACCAGACAGACAATGA

mRNA sequence

Show/hide mRNA sequence

GTTTTTTGTCTAACTTTTATCGAAGATAGGTCAAAGACCTCTCAAAATGGCCGCATTGTTCGGCGGCGCGTAAACTCCACGCTTTCACCTCCACTTCCCATTCCAGGTTC
TTCCTTCCTCGATTCTCGGTTCGGATAAGTTTTCTTCCTCTTTTTATTTTCTTTTCTTTCTATCCAAACAGATTTTAATCCGAGAAAATCCATTCATATGGACTCGGATT
CCTTTCGCCAGCCCACTTCTCTCTGTAATTTACTACCCATTACCCCTTTATCCTTCTCGATAATTGCACAAACTTATCCACATCTGACCAAATCCGATTTTCCCAACTGT
TCATTGGCTTTATTGCTTCATTATTTATGTTTATCCATTCACCTCTGACCCATCACCGGTAATCGATTTGATTTGCCCTCTTTGTTGGGGGGTTCTTCGGTTTTGTTGCT
TTTGAGAAAAGGGTAGTGATGATTAGCCGGCGTCGAGAAGATTTACCATCTGGGGTTGGAGTTTTGGATGAGATTTCGTCTCTGCTTTTGAAAATTCTCCGATCGCCGCC
GCCGCCGGTGCCATTTTCCGATCATGTTCTTGAATTGACTTCCGTCATTTCGTCGTCGTCTAGAACTCTCCCTTCTTCCCAGTTGACGCCGGCTGGATTTGCATTTCTGC
TTTTGGGGATTTCGTTTGCTTTGATGCTCTGTGGATCGGTTGCTTTCTTCCTTGGCTTCATTTTGATGCCTTGGATTCTTGTTTTGGCGATGGTTTTCTATTTGGTTGGG
GTCGTTTCTAGCCTCTCCATGTTGGGTCGATCTTTGCTTTGTTGCTTCACAGCTCCAACGCCTCGTAAAGATTTTAATGCCAATTTTTGGACAGGGATTTTTTCTTTTGA
TAATCAAAAAATCGGAAATACCCACCACCACTACGTACTTGGAGGTACCCACACAAGTCTGAAGTCCGGACCAGACAGACAATGAGAGATTTTTACAATTAAGTTTATTC
GTGAAATTCAAATTTGAGACTTCAAAAGAAGCATACTTGGAAGACTCCAAGCCACTAAACTAACGAGACAGATGTAAATACGTAGAAACCTTAGTTTGTTCAACCAGATA
GTTGAATTATTTGCCAGAGGATGGAGCGAGCGGAGCTTACCGGAGAATTTGAGCAAAGATGGCCTTGTGAATGAATGGTGCTGCGTCTAGACACACATACAGGCAAGATA
GAGTTTGAATTGTTTGTCTCAGTTTGTTGTTTTTGAGATTGTGGAGTGATATTGTGTTGTGAATCTATCTTCCTACTTTTAAGACTTTTTTAGTCCATTGTTTTCTCAAG
TCTTTTGAACATATGTGCAACTGCCCCGGTTCGAACTGCCTGTTCGGCTATAAAGAATGTAAAAAAAGTGTCGTAAACGACAATGAAGATTCATTTCCACGGTACTCGGT
CCGTTTCATCTTTCTGGCTGTTTGGTTCAAGGTTTCTTATATATGTGTGAG

Protein sequence

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MISRRREDLPSGVGVLDEISSLLLKILRSPPPPVPFSDHVLELTSVISSSSRTLPSSQLTPAGFAFLLLGISFALMLCGSVAFFLGFILMPWILVLAMVFYLVGVVSSLS
MLGRSLLCCFTAPTPRKDFNANFWTGIFSFDNQKIGNTHHHYVLGGTHTSLKSGPDRQ

Sed0026789 (gene) of Chayote v1 genome