; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0026800 (gene) of Chayote v1 genome

Gene IDSed0026800
OrganismSechium edule (Chayote v1)
Description33 kDa ribonucleoprotein, chloroplastic
Genome locationLG04:7377887..7381056
RNA-Seq ExpressionSed0026800
SyntenySed0026800
Gene Ontology termsGO:1901259 - chloroplast rRNA processing (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577717.1 hypothetical protein SDJN03_25291, partial [Cucurbita argyrosperma subsp. sororia]4.9e-9569.39Show/hide
Query:  MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTENQ
        MATL+SAIPI+SQY  S    SSS+LSF  + SAIKLRIS SS         AVSP  LFL +PS NR    RFCSAV ++ S  E S++NQ DV+ + +
Subjt:  MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTENQ

Query:  KLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYV
        KL++FN PWS+S + IKE F QCGTV  VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKRLKK PPP+P GPPPGE+V+KLYV
Subjt:  KLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYV

Query:  SNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES
        SNLAW+ RS+NLREFFSE+FNP A RVV DS SG+SAGYGFVSFATR+EAETALSSLEGKELMGRP+RLKFSER   +SET K+D VE+Q EES
Subjt:  SNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES

XP_022923294.1 33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata]6.4e-9569.39Show/hide
Query:  MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTENQ
        MATL+SAIPI+SQY  SS   SSS+LS   + SAIKLRIS SS         AVSP  LFL +PS NR    RFCSAV ++ S  E S++NQ DV+ + +
Subjt:  MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTENQ

Query:  KLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYV
        KL++FN PWS+S + IKE F QCGTV  VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKRLKK PPP+P GPPPGE+V+KLYV
Subjt:  KLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYV

Query:  SNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES
        SNLAW+ RS+NLREFFSE+FNP A RVV DS SG+SAGYGFVSFATR+EAETALSSLEGKELMGRP+RLKFSER   +SET K+D VE+Q EES
Subjt:  SNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES

XP_023007582.1 29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima]6.4e-9569.02Show/hide
Query:  MATLDSAIPIVSQYF---PSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVST
        MATL+SAIPI+SQY     SSS  SSS+LSF  + SAIKLRIS SS         AVSP  LFL +P  NR    RFCSAV ++ S  E S++NQ DV+ 
Subjt:  MATLDSAIPIVSQYF---PSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVST

Query:  ENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNK
        + +KL++FN PWS+S + IKE F QCGTV  VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKRLKK PPP+P GPPPGE+V+K
Subjt:  ENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNK

Query:  LYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES
        LYVSNLAW+ RS+NLREFFSE+FNP A RVV DS SG+SAGYGFVSFATR+EAETALSSLEGKELMGRP+RLKFSER+  +SET K+D VE+Q EES
Subjt:  LYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES

XP_023551853.1 29 kDa ribonucleoprotein A, chloroplastic [Cucurbita pepo subsp. pepo]1.2e-9369.15Show/hide
Query:  MATLDSAIPIVSQYF-PSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTEN
        MATL+SAIPI+SQY   SSS  SSS+LSF  + SAIKLRIS SS         AVSP  LFL +PS NR    RF SAV ++ S  E S++NQ DV+ + 
Subjt:  MATLDSAIPIVSQYF-PSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTEN

Query:  QKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLY
        +KL++FN PWS+S + IKE F QCGTV  VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKRLKK PPP+P GPPPGE+V+KLY
Subjt:  QKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLY

Query:  VSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES
        VSNLAW+ RS+NLREFFSE+FNP A RVV DS SG+SAGYGFVSFATR+EAETALSSLEGKELMGRP+RLKFSER+  +SET  +D VE+Q EES
Subjt:  VSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES

XP_038904114.1 33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]1.3e-9268.94Show/hide
Query:  MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLFLIH---PSSNRRFCSAVHQLRSDHELSQQNQVDVSTENQK
        MATL+SAIPI+SQY  S    SSS+L    + SAIKLRIS SS         A+SP SL L          R CSAV ++ S  E S+QN+ DV+ + +K
Subjt:  MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLFLIH---PSSNRRFCSAVHQLRSDHELSQQNQVDVSTENQK

Query:  LFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYVS
        L++FN PWS+S + IKELF QCGTV  VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKRLKK PPP+P GPPP E+VNKLYVS
Subjt:  LFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYVS

Query:  NLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES
        NLAW+VRSSNLREFFSE+FNP A RVV DS SGRSAGYGFVSFATR+EAETALSSLEGKELMGRP+RLKFSERN  ESET K+D VE+Q EES
Subjt:  NLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES

TrEMBL top hitse value%identityAlignment
A0A0A0L1U2 Uncharacterized protein2.1e-9165.98Show/hide
Query:  MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSSAV------SPSSLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTENQKLF
        M T++S +PI+S Y  SSS  S+S+L F  + S IKLRIS SS +      +P S    + S NR    R CSA+ ++  + E S++NQ DV+ + +KL+
Subjt:  MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSSAV------SPSSLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTENQKLF

Query:  VFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYVSNL
        +FN PWS S + IKELF QCGTV+ VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKRLKK PPP+P GPPPGE+VNKLYVSNL
Subjt:  VFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYVSNL

Query:  AWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES
        AW+VRS+NLR+FFSE+FNP A RVV DS +GRSAGYGFVSFATR+EA+TALSSLEGKELMGRP+RLKFSERN  E+ET K+DIVE+Q EES
Subjt:  AWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES

A0A1S3BK84 28 kDa ribonucleoprotein, chloroplastic2.7e-9167.7Show/hide
Query:  MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSL-FLIHPSSNRRFCSAVHQLRSDHELSQQNQVDVSTENQKLF
        MATL+SA+PI+S Y  SS   SSS+L F  + SAIKLRIS SS          +SP S     +P    R CSAV ++ S  E S++ Q DV+ + +KL+
Subjt:  MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSL-FLIHPSSNRRFCSAVHQLRSDHELSQQNQVDVSTENQKLF

Query:  VFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYVSNL
        +FN PWS S + IKELF QCGTV+ VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKR K+ PPP+P GPPPGE+VNKLYVSNL
Subjt:  VFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYVSNL

Query:  AWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES
        AW+VRSSNLR+FFSESFNP A RVV DS SGRSAGYGFVSFATR+EA+TALSSLEGKELMGRP+RLKFSER+  ESET K+DIVE+Q EES
Subjt:  AWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES

A0A6J1CW05 30 kDa ribonucleoprotein, chloroplastic1.6e-9171.13Show/hide
Query:  SAIPIVSQYFPSSS---FCSSSRLSF-VNVSSAIKLRISLSSAVSPSSLFLIHPSSNR---RFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSY
        SAIP +S +  SSS     SSSR+SF  N+SSAIKLRIS S+ +    L L  PS +R   R CSAV ++ S  E S+QNQ       +KL++FN PWS+
Subjt:  SAIPIVSQYFPSSS---FCSSSRLSF-VNVSSAIKLRISLSSAVSPSSLFLIHPSSNR---RFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSY

Query:  SDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYVSNLAWQVRSSN
        S + IKELF QCGTV  VEI+KQKNGRSRG+AF+TMASPEEAQAAI KF+SQEISGRVI VE+AKRLKK PPPRP GPPPGE+VNKLYVSNLAW+VRS+N
Subjt:  SDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYVSNLAWQVRSSN

Query:  LREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKES-ETTKQDIVENQLEES
        LREFFS+S NPTAGRVV DSLSGRSAGYGFVSFATR+EAETALSSLEGKELMGRP+RLKFSER+ KES E TK+DIVE+Q EES
Subjt:  LREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKES-ETTKQDIVENQLEES

A0A6J1E5Z7 33 kDa ribonucleoprotein, chloroplastic3.1e-9569.39Show/hide
Query:  MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTENQ
        MATL+SAIPI+SQY  SS   SSS+LS   + SAIKLRIS SS         AVSP  LFL +PS NR    RFCSAV ++ S  E S++NQ DV+ + +
Subjt:  MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVSTENQ

Query:  KLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYV
        KL++FN PWS+S + IKE F QCGTV  VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKRLKK PPP+P GPPPGE+V+KLYV
Subjt:  KLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYV

Query:  SNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES
        SNLAW+ RS+NLREFFSE+FNP A RVV DS SG+SAGYGFVSFATR+EAETALSSLEGKELMGRP+RLKFSER   +SET K+D VE+Q EES
Subjt:  SNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES

A0A6J1KZ42 29 kDa ribonucleoprotein A, chloroplastic3.1e-9569.02Show/hide
Query:  MATLDSAIPIVSQYF---PSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVST
        MATL+SAIPI+SQY     SSS  SSS+LSF  + SAIKLRIS SS         AVSP  LFL +P  NR    RFCSAV ++ S  E S++NQ DV+ 
Subjt:  MATLDSAIPIVSQYF---PSSSFCSSSRLSFVNVSSAIKLRISLSS---------AVSPSSLFLIHPSSNR----RFCSAVHQLRSDHELSQQNQVDVST

Query:  ENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNK
        + +KL++FN PWS+S + IKE F QCGTV  VEI+KQKNGRSRG+AFVTMASP+EAQAAI KF+SQEISGRVI VE+AKRLKK PPP+P GPPPGE+V+K
Subjt:  ENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNK

Query:  LYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES
        LYVSNLAW+ RS+NLREFFSE+FNP A RVV DS SG+SAGYGFVSFATR+EAETALSSLEGKELMGRP+RLKFSER+  +SET K+D VE+Q EES
Subjt:  LYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES

SwissProt top hitse value%identityAlignment
P19684 33 kDa ribonucleoprotein, chloroplastic1.0e-2633.48Show/hide
Query:  VSSAIKLRISLSSAVSPSSLFLIHPSSNRRFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQK-NGRSRGY
        +SS  +  I LS+  S S    +    +    +   +   + E  ++     S E  +L+V N P+S +   + E+F + GTVA VEIV  +   RSRG+
Subjt:  VSSAIKLRISLSSAVSPSSLFLIHPSSNRRFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQK-NGRSRGY

Query:  AFVTMASPEEAQAAIHKFNSQEISGRVILVEY------AKRLKKSPPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRS
        AFVTM S EEA+ AI  F+  ++ GR + V +       +R   S   R       +S +KLYV+NL+W + S  LR+ F++     + +V+ D  SGRS
Subjt:  AFVTMASPEEAQAAIHKFNSQEISGRVILVEY------AKRLKKSPPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRS

Query:  AGYGFVSFATRQEAETALSSLEGKELMGRPIRL
         G+GF++F++ +   +AL ++   EL GRP+RL
Subjt:  AGYGFVSFATRQEAETALSSLEGKELMGRPIRL

P49314 31 kDa ribonucleoprotein, chloroplastic1.8e-2835.9Show/hide
Query:  SSFCSSSRLSFVNV-SSAIKLRISLSSAVSPSSLFLIHPS-SNRRFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAA
        SS   +S LSF ++ SS++ L +S SS    +S+     S S R   S   QL  D E+++Q +    +E+ KLFV N P+S     +  LFE+ G V  
Subjt:  SSFCSSSRLSFVNV-SSAIKLRISLSSAVSPSSLFLIHPS-SNRRFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAA

Query:  VEIVKQK-NGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPG-----------------------ESVNKLYVSNLA
        VE++  K +GRSRG+ FVTM++ EE +AA  +FN  EI GR I V       K       G   G                       +S N++YV NL+
Subjt:  VEIVKQK-NGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPG-----------------------ESVNKLYVSNLA

Query:  WQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEK
        W V    L+E FSE  N    +VV D  SGRS G+GFV++++ +E   A+ SL G +L GR IR+  +E   +
Subjt:  WQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEK

Q04836 31 kDa ribonucleoprotein, chloroplastic1.7e-2636.98Show/hide
Query:  SDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIV-KQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKS
        S+  +S++ +    +E  KLFV N  +  +   +  LFEQ GTV   E++  ++  +SRG+ FVTM+S +EA+ A+ KFN  +++GR++ V  A   + S
Subjt:  SDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIV-KQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKS

Query:  PPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSE
         P R   P   E   ++YV NL W V +  L + FSE       RVV D  +GRS G+GFV+ +   E   A+S+L+G+ L GR IR+  +E
Subjt:  PPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSE

Q08935 29 kDa ribonucleoprotein A, chloroplastic9.1e-2836.13Show/hide
Query:  AVSPSSLFLIHPSSNRRFCSAVHQLRSDHELSQQNQVDVSTE----------NQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQK-NGRSRGYAFV
        ++ PSSL L   SS+  F S   +  +  +  Q   V+   +          + K+FV N P+S     + ELFE+ G V  VE++  K  GRSRG+ FV
Subjt:  AVSPSSLFLIHPSSNRRFCSAVHQLRSDHELSQQNQVDVSTE----------NQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQK-NGRSRGYAFV

Query:  TMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPR----------PAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGR
        TM+S EE +AA  +FN  E+ GR      A R+   PPP             G    +S N++YV NLAW V    L   FSE       +VV D  SGR
Subjt:  TMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPR----------PAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGR

Query:  SAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSE
        S G+GFV++++ +E   A+ SL+G +L GR IR+  +E
Subjt:  SAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSE

Q08937 29 kDa ribonucleoprotein B, chloroplastic1.8e-2836.36Show/hide
Query:  SSFCSSSRLSFVNVSSAIKLRISLSSAVSPSSLFLIHP----SSNRRFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTV
        SS   +S LSF ++ S+  L +SLSS  S + L  I P     S R   S   QL  D E+++Q +    +E+ KLFV N P+S     +  LFE+ G V
Subjt:  SSFCSSSRLSFVNVSSAIKLRISLSSAVSPSSLFLIHP----SSNRRFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTV

Query:  AAVEIVKQK-NGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPG-----------------------ESVNKLYVSN
          VE++  K  GRSRG+ FVTM++ EE +AA  +FN  EI GR I V       K       G   G                       +S N++YV N
Subjt:  AAVEIVKQK-NGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPG-----------------------ESVNKLYVSN

Query:  LAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEK
        L+W V    L+E FSE  N    +VV D  SGRS G+GFV++++ +E   A+ SL G +L GR IR+  +E   +
Subjt:  LAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEK

Arabidopsis top hitse value%identityAlignment
AT2G35410.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-5849.29Show/hide
Query:  MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIK---LRISLSSAVSPSSLFLIHPSSNRR----FCSAVHQLRSDHELSQQNQVDVSTEN----QKL
        MA L++++ I S    SSS  SS    F   SS++K   L + + S +SP         ++RR     CS   +  S  E + Q +    T+N    +KL
Subjt:  MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIK---LRISLSSAVSPSSLFLIHPSSNRR----FCSAVHQLRSDHELSQQNQVDVSTEN----QKL

Query:  FVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRP---AGPPPGESVNKLY
        FVFN PWS S   I ELF QCGTV  VEI++QK+G++RG+AFVTMAS EEAQAAI KF++ ++SGR+I V +A+R KK  P  P     P PG++ +KLY
Subjt:  FVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRP---AGPPPGESVNKLY

Query:  VSNLAWQVRSSNLREFFSES-FNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESE
        VSNLAW+ RS++LRE F+ + FNP + RVV     GRS+GYGFVSFATR+EAE A++ L GKE+MGRPI LKFS R+  ESE
Subjt:  VSNLAWQVRSSNLREFFSES-FNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESE

AT4G09040.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.8e-2937.26Show/hide
Query:  SDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSP
        S    S    V+      +L   N PW+ +   I+ LFE+ G+V  +E+   K  R+RG  F+ MASPEEA  A+    S E  GR + V+YAK  KK  
Subjt:  SDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSP

Query:  PPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFF-SESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESET
              P P  + N L+V+NLA++ R+ +L+EFF +++ N  +  V+      RS+GYGFVSF T+++AE AL   +GK+ +GRPIRL  S++  K    
Subjt:  PPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFF-SESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESET

Query:  TKQDIVENQLEE
              E + EE
Subjt:  TKQDIVENQLEE

AT4G09040.2 RNA-binding (RRM/RBD/RNP motifs) family protein5.0e-2939.18Show/hide
Query:  KLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYV
        +L   N PW+ +   I+ LFE+ G+V  +E+   K  R+RG  F+ MASPEEA  A+    S E  GR + V+YAK  KK        P P  + N L+V
Subjt:  KLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYV

Query:  SNLAWQVRSSNLREFF-SESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEE
        +NLA++ R+ +L+EFF +++ N  +  V+      RS+GYGFVSF T+++AE AL   +GK+ +GRPIRL  S++  K          E + EE
Subjt:  SNLAWQVRSSNLREFF-SESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEE

AT4G24770.1 31-kDa RNA binding protein1.2e-2736.98Show/hide
Query:  SDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIV-KQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKS
        S+  +S++ +    +E  KLFV N  +  +   +  LFEQ GTV   E++  ++  +SRG+ FVTM+S +EA+ A+ KFN  +++GR++ V  A   + S
Subjt:  SDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIV-KQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKS

Query:  PPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSE
         P R   P   E   ++YV NL W V +  L + FSE       RVV D  +GRS G+GFV+ +   E   A+S+L+G+ L GR IR+  +E
Subjt:  PPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSE

AT5G50250.1 chloroplast RNA-binding protein 31B6.1e-2738.67Show/hide
Query:  ENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKN-GRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVN
        E  KLFV N P+      +  LFEQ GTV   E++  ++  +SRG+ FVTM++ EEA+ A+ KFNS E++GR + V  A   + S P R   P   ++  
Subjt:  ENQKLFVFNFPWSYSDLHIKELFEQCGTVAAVEIVKQKN-GRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVN

Query:  KLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEK
        ++YV NL W V S  L   FSE       RVV D  +GRS G+GFV  +   E   A+++L+G+ L GR I++  +E   +
Subjt:  KLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLSGRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGCTCGATTCTGCAATTCCCATAGTCTCCCAATACTTTCCCTCTTCTTCATTTTGTTCTTCGTCAAGATTATCCTTCGTCAATGTTTCCTCCGCCATTAAGCT
TCGCATTTCCTTATCCTCCGCCGTTTCCCCTTCTTCCCTCTTTCTGATCCATCCATCCTCCAATCGCCGATTCTGCTCTGCCGTTCACCAGCTTCGTTCAGATCACGAAC
TTTCACAGCAAAATCAGGTTGATGTCTCGACTGAGAATCAAAAGTTGTTTGTCTTCAATTTTCCCTGGTCTTATTCGGACCTCCACATTAAGGAACTGTTTGAACAATGC
GGAACTGTCGCCGCTGTTGAGATTGTAAAGCAGAAAAATGGAAGGAGCAGGGGATATGCCTTTGTCACTATGGCCTCACCCGAGGAAGCTCAAGCTGCTATTCACAAATT
CAACTCTCAAGAAATATCAGGAAGAGTTATACTGGTAGAGTATGCAAAGAGATTGAAGAAATCACCTCCTCCAAGGCCTGCAGGTCCCCCTCCTGGAGAGTCAGTGAATA
AACTTTATGTATCAAATCTTGCATGGCAAGTGAGATCCAGCAATCTCAGAGAATTCTTTTCTGAAAGCTTCAATCCAACTGCAGGCAGGGTTGTGCTTGATAGCCTCTCT
GGAAGATCTGCTGGATATGGCTTTGTTTCGTTTGCTACTCGACAGGAAGCAGAAACTGCACTTTCTTCTTTGGAGGGGAAGGAATTGATGGGAAGACCAATTCGCCTGAA
ATTTAGTGAAAGAAATGAGAAGGAATCAGAAACCACAAAACAAGACATTGTTGAAAACCAACTTGAAGAATCATAG
mRNA sequenceShow/hide mRNA sequence
CATCATACTATTTTAACTAAATTTCTAATAGACTATGAAACGAGAGAATTCAGCATTTATAAGAGTCGACCCCTTATCCAAAAATTCCTTGCCCTCAAAACCGTAACAAT
GGCGACGCTCGATTCTGCAATTCCCATAGTCTCCCAATACTTTCCCTCTTCTTCATTTTGTTCTTCGTCAAGATTATCCTTCGTCAATGTTTCCTCCGCCATTAAGCTTC
GCATTTCCTTATCCTCCGCCGTTTCCCCTTCTTCCCTCTTTCTGATCCATCCATCCTCCAATCGCCGATTCTGCTCTGCCGTTCACCAGCTTCGTTCAGATCACGAACTT
TCACAGCAAAATCAGGTTGATGTCTCGACTGAGAATCAAAAGTTGTTTGTCTTCAATTTTCCCTGGTCTTATTCGGACCTCCACATTAAGGAACTGTTTGAACAATGCGG
AACTGTCGCCGCTGTTGAGATTGTAAAGCAGAAAAATGGAAGGAGCAGGGGATATGCCTTTGTCACTATGGCCTCACCCGAGGAAGCTCAAGCTGCTATTCACAAATTCA
ACTCTCAAGAAATATCAGGAAGAGTTATACTGGTAGAGTATGCAAAGAGATTGAAGAAATCACCTCCTCCAAGGCCTGCAGGTCCCCCTCCTGGAGAGTCAGTGAATAAA
CTTTATGTATCAAATCTTGCATGGCAAGTGAGATCCAGCAATCTCAGAGAATTCTTTTCTGAAAGCTTCAATCCAACTGCAGGCAGGGTTGTGCTTGATAGCCTCTCTGG
AAGATCTGCTGGATATGGCTTTGTTTCGTTTGCTACTCGACAGGAAGCAGAAACTGCACTTTCTTCTTTGGAGGGGAAGGAATTGATGGGAAGACCAATTCGCCTGAAAT
TTAGTGAAAGAAATGAGAAGGAATCAGAAACCACAAAACAAGACATTGTTGAAAACCAACTTGAAGAATCATAGATCCAACTCTGATACAACATCACATTCATCACTTGA
GATTCCAACAAATATGCTTGAAATTTCTGAAATCAAATCCTCTTGGAGCATAATGTCAATTGTGTTGTTTTGATGTTTTGACACTTTCAAGGACAATGCTAGTAGAGGGC
TCACCTTTATAAAAATTAGCAATCGATAGTGATTATGAAATTTATGTTGTCGTCAATTTGAATATAATTCAAATGGTTAAAGATGATAGAGACAAAAATTAAGGTCAAAG
TCCGAATTTCTC
Protein sequenceShow/hide protein sequence
MATLDSAIPIVSQYFPSSSFCSSSRLSFVNVSSAIKLRISLSSAVSPSSLFLIHPSSNRRFCSAVHQLRSDHELSQQNQVDVSTENQKLFVFNFPWSYSDLHIKELFEQC
GTVAAVEIVKQKNGRSRGYAFVTMASPEEAQAAIHKFNSQEISGRVILVEYAKRLKKSPPPRPAGPPPGESVNKLYVSNLAWQVRSSNLREFFSESFNPTAGRVVLDSLS
GRSAGYGFVSFATRQEAETALSSLEGKELMGRPIRLKFSERNEKESETTKQDIVENQLEES