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Sed0026811 (gene) of Chayote v1 genome

Gene IDSed0026811
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG09:9911751..9931834
RNA-Seq ExpressionSed0026811
SyntenySed0026811
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB3482375.1 unnamed protein product [Digitaria exilis]1.8e-1033.13Show/hide
Query:  GVKKEKSQ--KVVGSDSSFARELVGSEVVGTWTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEI
        GVK E+ Q  K  GS    A+     E    W+PPP G  K+NVD SF    G  G+G + RD   + +  GW+     S     E E    A +  + +
Subjt:  GVKKEKSQ--KVVGSDSSFARELVGSEVVGTWTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEI

Query:  GIRWIP-PILVESNALEVVNTINGDSLDLSEFNNICADILESLSLLGLGKIHYCRRSCNRVADVLA
           W P P+++ES+   +V  I  D  D SE   I ++ LE   +L   K+    R CN VA  LA
Subjt:  GIRWIP-PILVESNALEVVNTINGDSLDLSEFNNICADILESLSLLGLGKIHYCRRSCNRVADVLA

CAB4273082.1 unnamed protein product [Prunus armeniaca]2.3e-1032.87Show/hide
Query:  VGSEVVGTWTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWIPPILVESNALEVVNTING
        V +E V +W  PP G  KVN DA++ +    GG+GWVVRD     +  G K  ++  S   +E E +REAL+  ++ G   +  + VES++L+V+  I G
Subjt:  VGSEVVGTWTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWIPPILVESNALEVVNTING

Query:  D-SLDLSEFNNICADILESLSLLGLGKIHYCRRSCNRVADVLA
        + ++D++  + I  DI + +         Y  R+CN+ A  +A
Subjt:  D-SLDLSEFNNICADILESLSLLGLGKIHYCRRSCNRVADVLA

EEC75749.1 hypothetical protein OsI_12637 [Oryza sativa Indica Group]6.7e-1030.15Show/hide
Query:  WTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWIP-PILVESNALEVVNTINGDSLDLSE
        W PPP G  K+NVD +FS   G G IG ++R+   + +L  W+   + +  +    EV   A    L++   W+P P+ +ES+   V+  +     D S 
Subjt:  WTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWIP-PILVESNALEVVNTINGDSLDLSE

Query:  FNNICADILESLSLLGLGKIHYCRRSCNRVADVLAK
        +  +  +  + +SL+   ++ +C+R CNRVA  LA+
Subjt:  FNNICADILESLSLLGLGKIHYCRRSCNRVADVLAK

EEE64789.1 hypothetical protein OsJ_19645 [Oryza sativa Japonica Group]6.7e-1033.82Show/hide
Query:  WTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWIP-PILVESNALEVVNTINGDSLDLSE
        W PPP+G  K+NVD +F   +G  GIG V+RD   R LL  W+   + S  +  E E+L  A    + +   WI  P+++ES+ L    +I G  ++ S 
Subjt:  WTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWIP-PILVESNALEVVNTINGDSLDLSE

Query:  FNNICADILESLSLLGLGKIHYCRRSCNRVADVLAK
        +  +  +I  ++  L    +H+  R CNRVA  LA+
Subjt:  FNNICADILESLSLLGLGKIHYCRRSCNRVADVLAK

MCH81978.1 ribonuclease H protein [Trifolium medium]7.9e-1132.18Show/hide
Query:  WKRQARL-GVKKEKSQKVVGSDSSFARELVGSEVVGTWTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGE--VLRE
        W   A + GV  E S+   G+ +SF    +    +  W PP QG  K NVDASF  T+   G GW +RD + R +L G  + + Q+    +EGE   ++E
Subjt:  WKRQARL-GVKKEKSQKVVGSDSSFARELVGSEVVGTWTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGE--VLRE

Query:  ALLHLLEIGIRWIPPILVESNALEVVNTINGDSLDLSEFNNICADILESLSLLGLGKIHYCRRSCNRVADVLAK
        A+  L++   R    +++ES++  V+  I       SEF+N+ + I   L L+   ++ + RR  N VA  LA+
Subjt:  ALLHLLEIGIRWIPPILVESNALEVVNTINGDSLDLSEFNNICADILESLSLLGLGKIHYCRRSCNRVADVLAK

TrEMBL top hitse value%identityAlignment
A0A392M5F5 Ribonuclease H protein (Fragment)3.8e-1132.18Show/hide
Query:  WKRQARL-GVKKEKSQKVVGSDSSFARELVGSEVVGTWTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGE--VLRE
        W   A + GV  E S+   G+ +SF    +    +  W PP QG  K NVDASF  T+   G GW +RD + R +L G  + + Q+    +EGE   ++E
Subjt:  WKRQARL-GVKKEKSQKVVGSDSSFARELVGSEVVGTWTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGE--VLRE

Query:  ALLHLLEIGIRWIPPILVESNALEVVNTINGDSLDLSEFNNICADILESLSLLGLGKIHYCRRSCNRVADVLAK
        A+  L++   R    +++ES++  V+  I       SEF+N+ + I   L L+   ++ + RR  N VA  LA+
Subjt:  ALLHLLEIGIRWIPPILVESNALEVVNTINGDSLDLSEFNNICADILESLSLLGLGKIHYCRRSCNRVADVLAK

A0A6J5UAY2 Reverse transcriptase domain-containing protein1.1e-1032.87Show/hide
Query:  VGSEVVGTWTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWIPPILVESNALEVVNTING
        V +E V +W  PP G  KVN DA++ +    GG+GWVVRD     +  G K  ++  S   +E E +REAL+  ++ G   +  + VES++L+V+  I G
Subjt:  VGSEVVGTWTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWIPPILVESNALEVVNTING

Query:  D-SLDLSEFNNICADILESLSLLGLGKIHYCRRSCNRVADVLA
        + ++D++  + I  DI + +         Y  R+CN+ A  +A
Subjt:  D-SLDLSEFNNICADILESLSLLGLGKIHYCRRSCNRVADVLA

B8AMK5 RNase H domain-containing protein3.2e-1030.15Show/hide
Query:  WTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWIP-PILVESNALEVVNTINGDSLDLSE
        W PPP G  K+NVD +FS   G G IG ++R+   + +L  W+   + +  +    EV   A    L++   W+P P+ +ES+   V+  +     D S 
Subjt:  WTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWIP-PILVESNALEVVNTINGDSLDLSE

Query:  FNNICADILESLSLLGLGKIHYCRRSCNRVADVLAK
        +  +  +  + +SL+   ++ +C+R CNRVA  LA+
Subjt:  FNNICADILESLSLLGLGKIHYCRRSCNRVADVLAK

B9FGL8 Uncharacterized protein9.4e-1030.88Show/hide
Query:  WTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWI-PPILVESNALEVVNTINGDSLDLSE
        W PPP+G  K+NVD +FS T+  GGIG + RD   + LL  WK   + +  + +E     E     +++   WI  PI++ES+ + V+  +  +  + S 
Subjt:  WTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWI-PPILVESNALEVVNTINGDSLDLSE

Query:  FNNICADILESLSLLGLGKIHYCRRSCNRVADVLAK
        +  +       +  L   +I + +R CNRVA  LA+
Subjt:  FNNICADILESLSLLGLGKIHYCRRSCNRVADVLAK

B9FIH0 RNase H domain-containing protein3.2e-1033.82Show/hide
Query:  WTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWIP-PILVESNALEVVNTINGDSLDLSE
        W PPP+G  K+NVD +F   +G  GIG V+RD   R LL  W+   + S  +  E E+L  A    + +   WI  P+++ES+ L    +I G  ++ S 
Subjt:  WTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWIP-PILVESNALEVVNTINGDSLDLSE

Query:  FNNICADILESLSLLGLGKIHYCRRSCNRVADVLAK
        +  +  +I  ++  L    +H+  R CNRVA  LA+
Subjt:  FNNICADILESLSLLGLGKIHYCRRSCNRVADVLAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein1.5e-0725.81Show/hide
Query:  SDSSFARELVGSEVVGTWTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWIPPILVESNA
        ++S   +  V     G W PPP    K N DA+++  N   GIGWV+R+ +     +G +A  K  S    E E +R A+L L      +   ++ ES++
Subjt:  SDSSFARELVGSEVVGTWTPPPQGCWKVNVDASFSTTNGYGGIGWVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWIPPILVESNA

Query:  LEVVNTINGDSLDLSEFNNICADILESLSLLGLGKIHYCRRSCNRVADVLAKQNV
          ++  +N D +          D+   LS     K  +  R  N +A+ +A++++
Subjt:  LEVVNTINGDSLDLSEFNNICADILESLSLLGLGKIHYCRRSCNRVADVLAKQNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGGGTGAGAAGGCAAGAAGAGCTAGATTTGAAAAAGTTAAAAAGTTGCAATCCCTCGATGGACGTAATGAAGAAAATCAATACCAGTGTAGAGGAACTAGAGGA
GAAGATATTGACTGTTCTATCGGGAAAGAAGTGGAAACGCCAAGCTCGGCTAGGAGTCAAAAAGGAAAAGAGTCAGAAAGTGGTGGGATCAGATTCTTCTTTTGCTCGTG
AGCTGGTCGGTTCGGAGGTGGTGGGGACTTGGACTCCCCCCCCTCAAGGCTGTTGGAAAGTAAATGTTGATGCATCTTTTTCGACTACTAATGGTTATGGCGGTATTGGG
TGGGTTGTTCGTGATGGAAGGGCGAGGCCTTTGCTGGTTGGGTGGAAAGCTGGGCTCAAGCAATCCTCGCCCAAGATGTTGGAAGGCGAAGTCTTAAGAGAAGCACTGTT
GCATTTACTGGAGATTGGCATTCGTTGGATTCCTCCCATTCTTGTGGAGTCGAACGCGTTGGAGGTGGTAAACACTATCAATGGGGATTCGTTGGATCTCTCGGAGTTCA
ACAACATTTGTGCTGATATTTTGGAGTCTCTTTCATTGTTGGGTTTGGGAAAAATTCATTATTGTAGGAGATCTTGTAATAGGGTTGCCGATGTGCTTGCTAAACAAAAT
GTTGTTTCAAGCTTTAAGTGGAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGGGTGAGAAGGCAAGAAGAGCTAGATTTGAAAAAGTTAAAAAGTTGCAATCCCTCGATGGACGTAATGAAGAAAATCAATACCAGTGTAGAGGAACTAGAGGA
GAAGATATTGACTGTTCTATCGGGAAAGAAGTGGAAACGCCAAGCTCGGCTAGGAGTCAAAAAGGAAAAGAGTCAGAAAGTGGTGGGATCAGATTCTTCTTTTGCTCGTG
AGCTGGTCGGTTCGGAGGTGGTGGGGACTTGGACTCCCCCCCCTCAAGGCTGTTGGAAAGTAAATGTTGATGCATCTTTTTCGACTACTAATGGTTATGGCGGTATTGGG
TGGGTTGTTCGTGATGGAAGGGCGAGGCCTTTGCTGGTTGGGTGGAAAGCTGGGCTCAAGCAATCCTCGCCCAAGATGTTGGAAGGCGAAGTCTTAAGAGAAGCACTGTT
GCATTTACTGGAGATTGGCATTCGTTGGATTCCTCCCATTCTTGTGGAGTCGAACGCGTTGGAGGTGGTAAACACTATCAATGGGGATTCGTTGGATCTCTCGGAGTTCA
ACAACATTTGTGCTGATATTTTGGAGTCTCTTTCATTGTTGGGTTTGGGAAAAATTCATTATTGTAGGAGATCTTGTAATAGGGTTGCCGATGTGCTTGCTAAACAAAAT
GTTGTTTCAAGCTTTAAGTGGAACTAA
Protein sequenceShow/hide protein sequence
MGRVRRQEELDLKKLKSCNPSMDVMKKINTSVEELEEKILTVLSGKKWKRQARLGVKKEKSQKVVGSDSSFARELVGSEVVGTWTPPPQGCWKVNVDASFSTTNGYGGIG
WVVRDGRARPLLVGWKAGLKQSSPKMLEGEVLREALLHLLEIGIRWIPPILVESNALEVVNTINGDSLDLSEFNNICADILESLSLLGLGKIHYCRRSCNRVADVLAKQN
VVSSFKWN