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Sed0026851 (gene) of Chayote v1 genome

Gene IDSed0026851
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG08:27242193..27246619
RNA-Seq ExpressionSed0026851
SyntenySed0026851
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAS74010.1 Os01g0714300 [Oryza sativa Japonica Group]5.8e-0735.4Show/hide
Query:  LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKCNFVVIEERVSFPFGEELREPLSYFRGDRGQTVDHGVGGRGRGRGRGFG
        +K+ +DIR+PL R + +  G      W  + YE LPDF   CG IGH  + C   V++  +  PF ++LR   S  R D G   D G+GGR +      G
Subjt:  LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKCNFVVIEERVSFPFGEELREPLSYFRGDRGQTVDHGVGGRGRGRGRGFG

Query:  WRQATQDLRDEMG
        WR  +   R+  G
Subjt:  WRQATQDLRDEMG

KAF5956818.1 hypothetical protein HYC85_004043 [Camellia sinensis]5.8e-0742.86Show/hide
Query:  LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKCNFVVIEERVSFPFGEELR
        ++V ID +QPL R + +  G      W+T  YEKL DF   CGR+GH    C FV  E+  SF +G  LR
Subjt:  LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKCNFVVIEERVSFPFGEELR

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]1.1e-0831.98Show/hide
Query:  MNGIREIEESSSD--------LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKC--NFVVIEERVSFPFGEELREPL----
        +  + EIE   +D        ++V ID+ +PL+R IK+K+     + W  + YEKLPDF   CG+IGH  ++C     V+       +G+ LR  L    
Subjt:  MNGIREIEESSSD--------LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKC--NFVVIEERVSFPFGEELREPL----

Query:  -------SYFRG---DRGQTVDHGVGGRGRGRGRGFGWRQATQDLRDEMGRDDIHRRREE----WVPQPESI
                ++RG    RG  V+ G GGRG        WR+  ++ RD  G +  HRR  E     VP  ES+
Subjt:  -------SYFRG---DRGQTVDHGVGGRGRGRGRGFGWRQATQDLRDEMGRDDIHRRREE----WVPQPESI

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]1.2e-0730.95Show/hide
Query:  LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKCNFVVIEERVSFPFGEELR--EPLSYFRGD--RGQTVDHGVGGRGRGR-
        +KV I+I +PL+R I I  G  A E+W  I+YE LPDF   CGRIGH  + C    +      PFG ELR   P   F G+  R Q      GGR  G  
Subjt:  LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKCNFVVIEERVSFPFGEELR--EPLSYFRGD--RGQTVDHGVGGRGRGR-

Query:  --------GRGFGWRQATQDL---RDEMGRDDIHRRREEWVPQPESIP--------EKSQRC----------GNNSPTSDFVGKEASSSCQNRSQKGATE
                GRG G R  +  L   +D+MG     +  EE V  P  +         +K+++C                +   GK      +N+      E
Subjt:  --------GRGFGWRQATQDL---RDEMGRDDIHRRREEWVPQPESIP--------EKSQRC----------GNNSPTSDFVGKEASSSCQNRSQKGATE

Query:  KVIAESAKKA
        KV+  S K +
Subjt:  KVIAESAKKA

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]3.4e-0730.58Show/hide
Query:  LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKCNFVVIEERVSFPFGEELR--EPLSYFRGD--RGQTVDHGVGGRGRGR-
        +KV I+I +PL+R I I  G  A E+W  I+YE LPDF   CGRIGH  + C   +  E  + PFG ELR   P   F G+  R Q      GGR  G  
Subjt:  LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKCNFVVIEERVSFPFGEELR--EPLSYFRGD--RGQTVDHGVGGRGRGR-

Query:  --------GRGFGWRQATQDL---RDEMGRDDIHRRREEWVPQPESIP--------EKSQRCGNN--SPTSDFVGKEASSSCQNRSQKGATEKVIAESAK
                GRG G R  +  L   +D+MG     +  EE V  P  +         +K+++C  +  +  S      A+     R +KG   K      +
Subjt:  --------GRGFGWRQATQDL---RDEMGRDDIHRRREEWVPQPESIP--------EKSQRCGNN--SPTSDFVGKEASSSCQNRSQKGATEKVIAESAK

Query:  KA-ENRPNGLRLVEEEVDSETSGLEEQTILNKNESKVVKDSN
        K  E   N    +E+    E   L+ Q    K + +  K S+
Subjt:  KA-ENRPNGLRLVEEEVDSETSGLEEQTILNKNESKVVKDSN

TrEMBL top hitse value%identityAlignment
A0A0P0V7D8 Os01g0714300 protein2.8e-0735.4Show/hide
Query:  LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKCNFVVIEERVSFPFGEELREPLSYFRGDRGQTVDHGVGGRGRGRGRGFG
        +K+ +DIR+PL R + +  G      W  + YE LPDF   CG IGH  + C   V++  +  PF ++LR   S  R D G   D G+GGR +      G
Subjt:  LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKCNFVVIEERVSFPFGEELREPLSYFRGDRGQTVDHGVGGRGRGRGRGFG

Query:  WRQATQDLRDEMG
        WR  +   R+  G
Subjt:  WRQATQDLRDEMG

A0A5D3C0K2 Reverse transcriptase3.7e-0739.58Show/hide
Query:  KSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKCNFVVIEERVSFPFGEELRE---PLSYFRGDRGQTVDHGVGGRGRGRGRGFGWRQATQDLRD
        K G MA EKW+ +SYEKLPDF   CGR+GH+ Q+C  V  +      FG  LR+     S  +G R +        RGRG G+G    +  +  RD
Subjt:  KSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKCNFVVIEERVSFPFGEELRE---PLSYFRGDRGQTVDHGVGGRGRGRGRGFGWRQATQDLRD

A0A6J1D765 uncharacterized protein LOC1110179025.1e-0931.98Show/hide
Query:  MNGIREIEESSSD--------LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKC--NFVVIEERVSFPFGEELREPL----
        +  + EIE   +D        ++V ID+ +PL+R IK+K+     + W  + YEKLPDF   CG+IGH  ++C     V+       +G+ LR  L    
Subjt:  MNGIREIEESSSD--------LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKC--NFVVIEERVSFPFGEELREPL----

Query:  -------SYFRG---DRGQTVDHGVGGRGRGRGRGFGWRQATQDLRDEMGRDDIHRRREE----WVPQPESI
                ++RG    RG  V+ G GGRG        WR+  ++ RD  G +  HRR  E     VP  ES+
Subjt:  -------SYFRG---DRGQTVDHGVGGRGRGRGRGFGWRQATQDLRDEMGRDDIHRRREE----WVPQPESI

A0A7J7HY19 CCHC-type domain-containing protein2.8e-0742.86Show/hide
Query:  LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKCNFVVIEERVSFPFGEELR
        ++V ID +QPL R + +  G      W+T  YEKL DF   CGR+GH    C FV  E+  SF +G  LR
Subjt:  LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKCNFVVIEERVSFPFGEELR

W9RRS1 CCHC-type domain-containing protein1.4e-0635.11Show/hide
Query:  LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKC---NFVVIEERVSFPFGEELREPL----SYFRGDRGQTVDHG
        ++V++DI +P++R +KI  G      W  + YEKLPDF  GCG+ GH  ++C      V+ +    P+G  LR P     S+ R +R     HG
Subjt:  LKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKC---NFVVIEERVSFPFGEELREPL----SYFRGDRGQTVDHG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGATGGGATAATGAATGGGATAAGAGAAATAGAGGAAAGTTCCTCAGACTTAAAGGTGATTATTGACATTAGGCAGCCGTTAAAGAGAGCTATAAAAATTAAAAG
TGGTACTATGGCTGGTGAGAAATGGGTTACAATTTCCTATGAGAAGTTACCTGATTTTCGTTCAGGGTGTGGGAGAATTGGACATTTAGCTCAAAAATGCAATTTCGTGG
TGATTGAGGAAAGAGTTTCATTCCCATTTGGTGAGGAGCTTCGGGAACCTCTAAGTTATTTCAGAGGTGATCGTGGTCAAACGGTTGACCATGGGGTGGGAGGTCGTGGG
AGAGGAAGGGGGAGGGGCTTTGGTTGGAGGCAAGCAACACAAGATCTCCGTGATGAAATGGGGAGGGACGATATTCATCGCAGAAGGGAAGAGTGGGTTCCCCAGCCGGA
GTCTATACCAGAGAAAAGTCAAAGGTGTGGTAATAACTCACCGACGTCGGATTTCGTGGGGAAGGAAGCTTCGTCGTCTTGTCAAAATCGAAGTCAAAAGGGAGCGACTG
AGAAAGTTATTGCAGAGTCGGCTAAAAAAGCAGAAAATAGGCCTAATGGGCTTCGGTTAGTGGAGGAAGAGGTAGATTCAGAGACATCTGGGCTTGAGGAGCAGACTATT
CTTAATAAGAATGAGTCTAAGGTGGTGAAGGATTCGAATATGAATGTTAGGGTCAACAATAAAGAAATTTCTAAAAGGAAAGAGAATATTGAGCCCGTTCTTAAGGGTCA
GTTGCTATCTTTAGTGGCGGGTTTTGGGGAGGAGGTTTTGAAATTGAGGACGGGTGGGGTGAAAAGGAATTGCAAAGCAAGGCTTCGAGAGGTGATTTTGAATACCCCGT
TGAGCTCCTCTGAAACTACTGATGAAATCATTTGGAACAATAATCCGAGGGGCATTTTTTGGGTGAAGAGTGCTTACCATTTAGCTTTAATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGGATGGGATAATGAATGGGATAAGAGAAATAGAGGAAAGTTCCTCAGACTTAAAGGTGATTATTGACATTAGGCAGCCGTTAAAGAGAGCTATAAAAATTAAAAG
TGGTACTATGGCTGGTGAGAAATGGGTTACAATTTCCTATGAGAAGTTACCTGATTTTCGTTCAGGGTGTGGGAGAATTGGACATTTAGCTCAAAAATGCAATTTCGTGG
TGATTGAGGAAAGAGTTTCATTCCCATTTGGTGAGGAGCTTCGGGAACCTCTAAGTTATTTCAGAGGTGATCGTGGTCAAACGGTTGACCATGGGGTGGGAGGTCGTGGG
AGAGGAAGGGGGAGGGGCTTTGGTTGGAGGCAAGCAACACAAGATCTCCGTGATGAAATGGGGAGGGACGATATTCATCGCAGAAGGGAAGAGTGGGTTCCCCAGCCGGA
GTCTATACCAGAGAAAAGTCAAAGGTGTGGTAATAACTCACCGACGTCGGATTTCGTGGGGAAGGAAGCTTCGTCGTCTTGTCAAAATCGAAGTCAAAAGGGAGCGACTG
AGAAAGTTATTGCAGAGTCGGCTAAAAAAGCAGAAAATAGGCCTAATGGGCTTCGGTTAGTGGAGGAAGAGGTAGATTCAGAGACATCTGGGCTTGAGGAGCAGACTATT
CTTAATAAGAATGAGTCTAAGGTGGTGAAGGATTCGAATATGAATGTTAGGGTCAACAATAAAGAAATTTCTAAAAGGAAAGAGAATATTGAGCCCGTTCTTAAGGGTCA
GTTGCTATCTTTAGTGGCGGGTTTTGGGGAGGAGGTTTTGAAATTGAGGACGGGTGGGGTGAAAAGGAATTGCAAAGCAAGGCTTCGAGAGGTGATTTTGAATACCCCGT
TGAGCTCCTCTGAAACTACTGATGAAATCATTTGGAACAATAATCCGAGGGGCATTTTTTGGGTGAAGAGTGCTTACCATTTAGCTTTAATCTAG
Protein sequenceShow/hide protein sequence
MWDGIMNGIREIEESSSDLKVIIDIRQPLKRAIKIKSGTMAGEKWVTISYEKLPDFRSGCGRIGHLAQKCNFVVIEERVSFPFGEELREPLSYFRGDRGQTVDHGVGGRG
RGRGRGFGWRQATQDLRDEMGRDDIHRRREEWVPQPESIPEKSQRCGNNSPTSDFVGKEASSSCQNRSQKGATEKVIAESAKKAENRPNGLRLVEEEVDSETSGLEEQTI
LNKNESKVVKDSNMNVRVNNKEISKRKENIEPVLKGQLLSLVAGFGEEVLKLRTGGVKRNCKARLREVILNTPLSSSETTDEIIWNNNPRGIFWVKSAYHLALI