CuGenDBv2

Gene ID	Sed0026884
Organism	Sechium edule (Chayote v1)
Description	U2 small nuclear ribonucleoprotein A'
Genome location	LG09:3225369..3231375
RNA-Seq Expression	Sed0026884
Synteny	Sed0026884
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005737 - cytoplasm (cellular component) GO:0015030 - Cajal body (cellular component) GO:0005515 - protein binding (molecular function) GO:0030620 - U2 snRNA binding (molecular function)
InterPro domains	IPR001611 - Leucine-rich repeat IPR003603 - U2A'/phosphoprotein 32 family A, C-terminal IPR032675 - Leucine-rich repeat domain superfamily IPR044640 - U2 small nuclear ribonucleoprotein A'

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140564.3 U2 small nuclear ribonucleoprotein A' [Cucumis sativus]

3.9e-132

91.26

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVKTFVPGEVE ASKPVEEKQTPNVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL EDNT  N TKD DDKTMSD G+EE+V       + DE TPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE

XP_022148876.1 U2 small nuclear ribonucleoprotein A' [Momordica charantia]

1.5e-136

93.68

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEA++LFSSKEVEEEAK ESVKTFVPGEVENASKP EEKQT NVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL EDNTVSNTTKDTDD+TMSD  +E+NVSKD KEQ  DE  PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQ

XP_022960458.1 U2 small nuclear ribonucleoprotein A' [Cucurbita moschata]

6.6e-140

95.1

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL EDNTV+NTTKDTDDKTMSD G+EENVSKD+KEQS DE TPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE

XP_023005060.1 U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]

1.9e-139

94.76

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL EDNTV+NTTKDTDDKT+SD G+EENVSKD+KEQS DE TPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE

XP_038907085.1 U2 small nuclear ribonucleoprotein A' [Benincasa hispida]

7.3e-139

94.76

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVK FVPGEVENASKPVEEKQT NVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE
        APT EQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL +DNTV NTTK+TDDKTMSD G+EENVSKD KEQS DEPTPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CAU7 U2 small nuclear ribonucleoprotein A'

6.7e-130

90.21

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVKTFV GEVE ASKPVEEKQTPNVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL EDNT  N TKD DDKT S  G+EE+V       + DE TPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE

A0A6J1D6P1 U2 small nuclear ribonucleoprotein A'

7.4e-137

93.68

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEA++LFSSKEVEEEAK ESVKTFVPGEVENASKP EEKQT NVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL EDNTVSNTTKDTDD+TMSD  +E+NVSKD KEQ  DE  PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQ

A0A6J1H905 U2 small nuclear ribonucleoprotein A'

3.2e-140

95.1

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL EDNTV+NTTKDTDDKTMSD G+EENVSKD+KEQS DE TPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE

A0A6J1KWC8 U2 small nuclear ribonucleoprotein A'

9.3e-140

94.76

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL EDNTV+NTTKDTDDKT+SD G+EENVSKD+KEQS DE TPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE

E5GB46 U2 small nuclear ribonucleoprotein a

6.7e-130

90.21

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDL+WK PHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKLKS+RVLDFKKVRNKERLEA+NLFSSKEVEEEAKKESVKTFV GEVE ASKPVEEKQTPNVS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNL EDNT  N TKD DDKT S  G+EE+V       + DE TPMEQE
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE

SwissProt top hits

e value

%identity

Alignment

P09661 U2 small nuclear ribonucleoprotein A'

2.6e-54

52.94

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT +L+ +   + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTPN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA+ +F  K   + AK      KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
           P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

P43333 U2 small nuclear ribonucleoprotein A'

2.9e-98

79.92

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT DL+WK PHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRL
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS
        VNLVEIDPLAS+PKLQ+LSLLDNNITKK NYRLYVIHKLKSLRVLDF K++ KER EA +LFSSKE EEE KK S +     EV+  S+  E  +TP V 
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

P57784 U2 small nuclear ribonucleoprotein A'

2.2e-53

52.52

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT +L+ +   + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTPN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA+ +F  K   + AK      KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
           P+   + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Q4R8Y8 U2 small nuclear ribonucleoprotein A'

2.6e-54

52.94

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT +L+ +   + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTPN
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA+ +F  K   + AK      KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
           P+P  + AIK AI N+ TL EV RL+  L+SGQ+P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Q9BLB6 Probable U2 small nuclear ribonucleoprotein A'

2.2e-45

45.8

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N P  +RL TL ++NNRI  I P+I   LP L TL LTNN +
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEE--EAKKESVKTFVPGEVENASKPVEEKQTPN
          L +I+PLA   KL++++ + N IT K NYR+Y+I+KL ++RV+DF +VR  ER  AK +F  K  ++  +A ++SV T  P E+E       E  +  
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEE--EAKKESVKTFVPGEVENASKPVEEKQTPN

Query:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
         +  T E    IK AI N+++L EV  L+  L SG++P
Subjt:  VSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Arabidopsis top hits

e value

%identity

Alignment

AT1G04210.1 Leucine-rich repeat protein kinase family protein

7.3e-04

38.37

Show/hide

Query:  IDLSDNEIVKLEN-MPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITKKPNY
        +DLS N+I  L N + YL+ L  L + +NR+  ++P +   L  L +L ++NNRL  L  +D L  +P+LQ L+L  N   K P+Y
Subjt:  IDLSDNEIVKLEN-MPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITKKPNY

AT1G09760.1 U2 small nuclear ribonucleoprotein A

2.1e-99

79.92

Show/hide

Query:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT DL+WK PHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRL
Subjt:  MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS
        VNLVEIDPLAS+PKLQ+LSLLDNNITKK NYRLYVIHKLKSLRVLDF K++ KER EA +LFSSKE EEE KK S +     EV+  S+  E  +TP V 
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGAGGCTCACAGTCGATTTAGTCTGGAAATGTCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGATCTTCGAGGTAACAAAATTGCAGTCATCGAAAACCT
AGGTGCCACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAACGAGATTGTGAAGCTTGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATA
ATAGAATCACTCGTATCAATCCAAATATCGGAGAGTTCTTGCCAAAATTACATACATTAGTTCTTACAAACAACAGACTCGTGAACTTGGTAGAGATTGACCCCTTGGCA
TCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAAAAGCCAAACTATAGATTGTATGTCATTCACAAGTTGAAGTCACTCCGGGTGCTTGATTT
CAAGAAAGTCAGAAACAAGGAGAGATTAGAGGCTAAGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCGAAAAAGGAATCTGTGAAGACATTCGTTCCAGGCGAGG
TAGAGAATGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAATGTGTCTGCACCAACACCGGAACAAATTATAGCTATTAAGGCGGCCATTGTTAACTCCCAAACTCTT
GAAGAGGTTGCAAGATTAGAACAGGCGCTAAAGTCGGGCCAGCTACCTGCAGATTTGAATCTTTTTGAAGATAATACTGTGTCAAATACCACAAAAGATACAGATGATAA
GACAATGTCTGATGTTGGAAACGAAGAAAATGTGTCCAAGGATTCGAAAGAACAGTCGGAGGATGAACCTACGCCTATGGAGCAGGAATAG

mRNA sequence

Show/hide mRNA sequence

ATCGTTTTGAACCTTCTTTCGAACGACGCAGCGCTGTTTTGCCGTCGTTGTCGTCGACGCCTTCCATTCGCCCTAAAACCCTAAACCGTCGCCTCCGCCTCCGCCGCCGT
CGTCGCCGCCGTAGTGGTTGCCGGCGAATCAAAGTCAGAAGAACATGGTGAGGCTCACAGTCGATTTAGTCTGGAAATGTCCTCATTTCTTCAATGCCATTAAGGAGCGA
GAACTGGATCTTCGAGGTAACAAAATTGCAGTCATCGAAAACCTAGGTGCCACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAACGAGATTGTGAAGCTTGAAAA
TATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATCAATCCAAATATCGGAGAGTTCTTGCCAAAATTACATACATTAGTTCTTA
CAAACAACAGACTCGTGAACTTGGTAGAGATTGACCCCTTGGCATCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTGGATAACAATATTACAAAAAAGCCAAACTATAGA
TTGTATGTCATTCACAAGTTGAAGTCACTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTAGAGGCTAAGAATTTATTTTCATCAAAAGAAGTTGAAGA
AGAGGCGAAAAAGGAATCTGTGAAGACATTCGTTCCAGGCGAGGTAGAGAATGCATCCAAACCTGTGGAGGAGAAACAAACTCCAAATGTGTCTGCACCAACACCGGAAC
AAATTATAGCTATTAAGGCGGCCATTGTTAACTCCCAAACTCTTGAAGAGGTTGCAAGATTAGAACAGGCGCTAAAGTCGGGCCAGCTACCTGCAGATTTGAATCTTTTT
GAAGATAATACTGTGTCAAATACCACAAAAGATACAGATGATAAGACAATGTCTGATGTTGGAAACGAAGAAAATGTGTCCAAGGATTCGAAAGAACAGTCGGAGGATGA
ACCTACGCCTATGGAGCAGGAATAGTAAAATGATCGTTGCTCGTTGATTTGTGGAGATTTTTGAAAGCTTTTGAGAAGTCGAAGCATGAAGTTCCCAGCCTGCTTTTGGT
TGGTTCTCTTTCCTTTTCCTTTTCCTTTTCCATGTAGTTTCGTGTTCTTTCTTTCCCCTTTAATGGGTAAAAAGTTCTTTAGATATATTATGGGATCTTCTATTGACTTA
TGAAATGGTTTTATGTTGTATTTACGACACTTGTAGTGTAATGCCTTTGAAATTTTCTTCCCT

Protein sequence

Show/hide protein sequence

MVRLTVDLVWKCPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLA
SLPKLQFLSLLDNNITKKPNYRLYVIHKLKSLRVLDFKKVRNKERLEAKNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTPNVSAPTPEQIIAIKAAIVNSQTL
EEVARLEQALKSGQLPADLNLFEDNTVSNTTKDTDDKTMSDVGNEENVSKDSKEQSEDEPTPMEQE

Sed0026884 (gene) of Chayote v1 genome