CuGenDBv2

Gene ID	Sed0026898
Organism	Sechium edule (Chayote v1)
Description	Complex 1 LYR protein
Genome location	LG11:26802049..26804015
RNA-Seq Expression	Sed0026898
Synteny	Sed0026898
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_016900070.1 PREDICTED: uncharacterized protein LOC103488569 [Cucumis melo]

5.9e-20

55.83

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Query:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD
        ++ LLD+HVV KEKS  D+ D+LI      S   E  S+  D+LR                +V   +ARKEFEDAR+ES+PEIVT LLIGGRDAVQS LD
Subjt:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD

Query:  KLVEKQMHEIDKKQSGRDQL
        KL EKQ  EIDKKQSGRDQL
Subjt:  KLVEKQMHEIDKKQSGRDQL

XP_022144304.1 uncharacterized protein LOC111014019 [Momordica charantia]

4.1e-21

57.14

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Query:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD
        ID LLD+HVV KEKS  DEDDELI      S   E  S+  D++R                +V   +ARKEFE+ARYES+PE+VT LLIGGRDAVQS LD
Subjt:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD

Query:  KLVEKQMHEIDKKQSGRDQ
        KL EKQM EIDKKQ G DQ
Subjt:  KLVEKQMHEIDKKQSGRDQ

XP_022961619.1 uncharacterized protein LOC111462339 [Cucurbita moschata]

4.5e-20

55.46

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Query:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD
        ID LLD+HVV KEKS  D+++ELI      S   E  S+  D+LR                +V   +ARKEFEDAR+E++PEIVT LLIGGRDAVQS LD
Subjt:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD

Query:  KLVEKQMHEIDKKQSGRDQ
        KL EKQ  EIDKKQSGRD+
Subjt:  KLVEKQMHEIDKKQSGRDQ

XP_023545212.1 uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo]

4.5e-20

55.46

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Query:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD
        ID LLD+HVV KEKS  D+++ELI      S   E  S+  D+LR                +V   +ARKEFEDAR+E++PEIVT LLIGGRDAVQS LD
Subjt:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD

Query:  KLVEKQMHEIDKKQSGRDQ
        KL EKQ  EIDKKQSGRD+
Subjt:  KLVEKQMHEIDKKQSGRDQ

XP_038884246.1 uncharacterized protein LOC120075144 [Benincasa hispida]

1.1e-21

58.97

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Query:  LLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLDKLV
        LLD+HVV KEKS  DE+DELI      +   E  S+  D+LR                +V   +ARKEFEDARYES+PEIVT LLIGGRDAVQS LDKL 
Subjt:  LLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLDKLV

Query:  EKQMHEIDKKQSGRDQL
        EKQM EIDKKQ+GRDQL
Subjt:  EKQMHEIDKKQSGRDQL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LMK5 Uncharacterized protein

1.4e-19

54.17

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Query:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD
        ++ LLD+HVV KEK   DEDD+LI      +   E  S+  D+LR                +V   +ARKEFEDAR ES+PE+VT LLIGGRDAVQS LD
Subjt:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD

Query:  KLVEKQMHEIDKKQSGRDQL
        KL EKQ  EIDKKQ GRDQL
Subjt:  KLVEKQMHEIDKKQSGRDQL

A0A1S4DWJ1 uncharacterized protein LOC103488569

2.8e-20

55.83

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Query:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD
        ++ LLD+HVV KEKS  D+ D+LI      S   E  S+  D+LR                +V   +ARKEFEDAR+ES+PEIVT LLIGGRDAVQS LD
Subjt:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD

Query:  KLVEKQMHEIDKKQSGRDQL
        KL EKQ  EIDKKQSGRDQL
Subjt:  KLVEKQMHEIDKKQSGRDQL

A0A5A7VCD6 Complex 1 LYR protein

2.8e-20

55.83

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Query:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD
        ++ LLD+HVV KEKS  D+ D+LI      S   E  S+  D+LR                +V   +ARKEFEDAR+ES+PEIVT LLIGGRDAVQS LD
Subjt:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD

Query:  KLVEKQMHEIDKKQSGRDQL
        KL EKQ  EIDKKQSGRDQL
Subjt:  KLVEKQMHEIDKKQSGRDQL

A0A6J1CRY1 uncharacterized protein LOC111014019

2.0e-21

57.14

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Query:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD
        ID LLD+HVV KEKS  DEDDELI      S   E  S+  D++R                +V   +ARKEFE+ARYES+PE+VT LLIGGRDAVQS LD
Subjt:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD

Query:  KLVEKQMHEIDKKQSGRDQ
        KL EKQM EIDKKQ G DQ
Subjt:  KLVEKQMHEIDKKQSGRDQ

A0A6J1HEL0 uncharacterized protein LOC111462339

2.2e-20

55.46

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Query:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD
        ID LLD+HVV KEKS  D+++ELI      S   E  S+  D+LR                +V   +ARKEFEDAR+E++PEIVT LLIGGRDAVQS LD
Subjt:  IDGLLDKHVVTKEKSHVDEDDELI-----ISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTLD

Query:  KLVEKQMHEIDKKQSGRDQ
        KL EKQ  EIDKKQSGRD+
Subjt:  KLVEKQMHEIDKKQSGRDQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G76060.1 LYR family of Fe/S cluster biogenesis protein

2.3e-14

39.32

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Query:  IDGLLDKHVVTKEKSHVDEDD------ELIISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTL
        ++ LL++H+  KEK  +D D+        + S   E  S+  D+LR                +V   +ARKEFE AR+E++PE++T LLIGG DAV S L
Subjt:  IDGLLDKHVVTKEKSHVDEDD------ELIISVCTEIFSVQLDVLRGQIL------------EVSCGDARKEFEDARYESEPEIVTGLLIGGRDAVQSTL

Query:  DKLVEKQMHEIDKKQSG
        DKL EKQ   I+K++ G
Subjt:  DKLVEKQMHEIDKKQSG

Sequences

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CDS sequence

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ATGTGCCTCCAGCATTCTAGGAATATCTGCAGAAGGAATAGTGAAGTGTTGCTTCTAGAATCTTCTTTACTGGAAAGCACATGGGTAATGGCTATATTAGCAAAGCTGTG
TTCAATCGATATAGATGGACTTTTAGACAAACACGTGGTTACGAAAGAAAAGTCCCATGTCGATGAAGATGATGAATTGATAATCTCAGTCTGTACCGAGATATTCTCCG
TGCAACTCGATGTTTTACGTGGCCAGATTCTGGAGGTGTCTTGTGGCGATGCTCGTAAGGAGTTTGAGGATGCCCGCTACGAGTCTGAGCCAGAAATTGTGACCGGACTT
CTCATTGGTGGGCGGGATGCAGTGCAGTCGACTCTTGACAAGCTTGTTGAGAAGCAGATGCATGAGATTGATAAGAAACAAAGTGGTCGAGATCAACTTTGA

mRNA sequence

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Protein sequence

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MCLQHSRNICRRNSEVLLLESSLLESTWVMAILAKLCSIDIDGLLDKHVVTKEKSHVDEDDELIISVCTEIFSVQLDVLRGQILEVSCGDARKEFEDARYESEPEIVTGL
LIGGRDAVQSTLDKLVEKQMHEIDKKQSGRDQL

Sed0026898 (gene) of Chayote v1 genome