CuGenDBv2

Gene ID	Sed0026907
Organism	Sechium edule (Chayote v1)
Description	photosystem II subunit X
Genome location	LG03:12024738..12025103
RNA-Seq Expression	Sed0026907
Synteny	Sed0026907
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0019904 - protein domain specific binding (molecular function)
InterPro domains	IPR009518 - Photosystem II PsbX

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0061475.1 membrane family protein [Cucumis melo var. makuwa]

2.9e-36

80.65

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Query:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSNKFQVRASLKEKAIAGLAATALTASMVLPEVAQAA-DGVTPSLKNFLLSIAS
        MASTSA+SMAMPITNAA +RAR  AEAFAKP LPLRP  +P  +S SS KFQVRASLKEKA+AGLAATALTASMVLPEVA+AA  GV+PSLKNFLLSIA+
Subjt:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSNKFQVRASLKEKAIAGLAATALTASMVLPEVAQAA-DGVTPSLKNFLLSIAS

Query:  GGVVIGAILGAIIGVSNFDPVKRT
        GGVV+ AILGA+IGV+NFDPVKRT
Subjt:  GGVVIGAILGAIIGVSNFDPVKRT

KAG6586487.1 Protein Brevis radix-like 4, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-36

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Query:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSN-KFQVRASLKEKAIAGLAATALTASMVLPEVAQAAD-GVTPSLKNFLLSIA
        MASTSAVSMAMPITNA  +R R   EAFAK  LPLRP  +PIAASKSS+ KFQVRASLKEKAIAGLAATALTASMVLPEVA+AA  GVTPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSN-KFQVRASLKEKAIAGLAATALTASMVLPEVAQAAD-GVTPSLKNFLLSIA

Query:  SGGVVIGAILGAIIGVSNFDPVKRT
        +GGVV+ AILGAIIGVSNFDPVKRT
Subjt:  SGGVVIGAILGAIIGVSNFDPVKRT

XP_011648590.1 uncharacterized protein LOC105434533 [Cucumis sativus]

2.2e-36

80.65

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Query:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSNKFQVRASLKEKAIAGLAATALTASMVLPEVAQAA-DGVTPSLKNFLLSIAS
        MASTSA+SMAMPITNAA +RAR  AEAFAKP LPLRP  +P  +S SS KFQVRASLKEKA+AGLAATALTASMVLPEVA+AA  GV+PSLKNFLLSIA+
Subjt:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSNKFQVRASLKEKAIAGLAATALTASMVLPEVAQAA-DGVTPSLKNFLLSIAS

Query:  GGVVIGAILGAIIGVSNFDPVKRT
        GGVV+ AILGA+IGV+NFDPVKRT
Subjt:  GGVVIGAILGAIIGVSNFDPVKRT

XP_023537653.1 uncharacterized protein LOC111798628 [Cucurbita pepo subsp. pepo]

1.7e-36

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Query:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSN-KFQVRASLKEKAIAGLAATALTASMVLPEVAQAAD-GVTPSLKNFLLSIA
        MASTSAVSMAMPITNA  +R R   EAFAK  LPLRP  +PIAASKSS+ KFQVRASLKEKAIAGLAATALTASMVLPEVA+AA  GVTPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSN-KFQVRASLKEKAIAGLAATALTASMVLPEVAQAAD-GVTPSLKNFLLSIA

Query:  SGGVVIGAILGAIIGVSNFDPVKRT
        +GGVV+ AILGAIIGVSNFDPVKRT
Subjt:  SGGVVIGAILGAIIGVSNFDPVKRT

XP_038890010.1 uncharacterized protein LOC120079733 [Benincasa hispida]

5.8e-37

81.45

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Query:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSNKFQVRASLKEKAIAGLAATALTASMVLPEVAQAA-DGVTPSLKNFLLSIAS
        MASTSA+SMAMPITNAA +RAR +AEAFAKP LPLRP  +P A+S SS KFQVRASLKEKA+AGLAATALTASMVLPEVA+AA  GV+PSLKNFLLSIA+
Subjt:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSNKFQVRASLKEKAIAGLAATALTASMVLPEVAQAA-DGVTPSLKNFLLSIAS

Query:  GGVVIGAILGAIIGVSNFDPVKRT
        GGVV+ AILGA+IGV+NFDPVKRT
Subjt:  GGVVIGAILGAIIGVSNFDPVKRT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIL7 Uncharacterized protein

1.1e-36

80.65

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Query:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSNKFQVRASLKEKAIAGLAATALTASMVLPEVAQAA-DGVTPSLKNFLLSIAS
        MASTSA+SMAMPITNAA +RAR  AEAFAKP LPLRP  +P  +S SS KFQVRASLKEKA+AGLAATALTASMVLPEVA+AA  GV+PSLKNFLLSIA+
Subjt:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSNKFQVRASLKEKAIAGLAATALTASMVLPEVAQAA-DGVTPSLKNFLLSIAS

Query:  GGVVIGAILGAIIGVSNFDPVKRT
        GGVV+ AILGA+IGV+NFDPVKRT
Subjt:  GGVVIGAILGAIIGVSNFDPVKRT

A0A5A7V6L0 Membrane family protein

1.4e-36

80.65

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Query:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSNKFQVRASLKEKAIAGLAATALTASMVLPEVAQAA-DGVTPSLKNFLLSIAS
        MASTSA+SMAMPITNAA +RAR  AEAFAKP LPLRP  +P  +S SS KFQVRASLKEKA+AGLAATALTASMVLPEVA+AA  GV+PSLKNFLLSIA+
Subjt:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSNKFQVRASLKEKAIAGLAATALTASMVLPEVAQAA-DGVTPSLKNFLLSIAS

Query:  GGVVIGAILGAIIGVSNFDPVKRT
        GGVV+ AILGA+IGV+NFDPVKRT
Subjt:  GGVVIGAILGAIIGVSNFDPVKRT

A0A6J1FHW0 uncharacterized protein LOC111444282

1.8e-36

83.2

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Query:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSN-KFQVRASLKEKAIAGLAATALTASMVLPEVAQAAD-GVTPSLKNFLLSIA
        MASTSAVSMAMPITNA  +R R   EAFAK  LPLRP  +PIAASKSS+ KFQVRAS+KEKAIAGLAATALTASMVLPEVA+AA  GVTPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSN-KFQVRASLKEKAIAGLAATALTASMVLPEVAQAAD-GVTPSLKNFLLSIA

Query:  SGGVVIGAILGAIIGVSNFDPVKRT
        +GGVV+ AILGAIIGVSNFDPVKRT
Subjt:  SGGVVIGAILGAIIGVSNFDPVKRT

A0A6J1HNZ4 uncharacterized protein LOC111465405

2.4e-36

83.2

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Query:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSN-KFQVRASLKEKAIAGLAATALTASMVLPEVAQAAD-GVTPSLKNFLLSIA
        MASTSAVSMAMPITNA  +R R   EAFAK  LPLRP  +PIAASKSS+ KFQV+ASLKEKAIAGLAATALTASMVLPEVA+AA  GVTPSLKNFLLSIA
Subjt:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSN-KFQVRASLKEKAIAGLAATALTASMVLPEVAQAAD-GVTPSLKNFLLSIA

Query:  SGGVVIGAILGAIIGVSNFDPVKRT
        +GGVV+ AILGAIIGVSNFDPVKRT
Subjt:  SGGVVIGAILGAIIGVSNFDPVKRT

A0A6J1KCH8 uncharacterized protein LOC111493667

1.5e-35

79.84

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Query:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSNKFQVRASLKEKAIAGLAATALTASMVLPEVAQAA-DGVTPSLKNFLLSIAS
        MASTSAVSMAMPITNA  +RAR   +AFAK  LPLRP  +P A+S S  KFQVRASLKEKA+AGLAATALTASMVLPEVA+AA  GV+PSLKNFLLSIA+
Subjt:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRP--QPIAASKSSNKFQVRASLKEKAIAGLAATALTASMVLPEVAQAA-DGVTPSLKNFLLSIAS

Query:  GGVVIGAILGAIIGVSNFDPVKRT
        GGVV+ AILGAIIGVSNFDPVKRT
Subjt:  GGVVIGAILGAIIGVSNFDPVKRT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G06520.1 photosystem II subunit X

3.9e-23

51.61

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Query:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRPQP--IAASKSSNKFQVRASLKEKAIAGLAATALTASMVLPEVAQAA-DGVTPSLKNFLLSIAS
        MASTSA+S+  P+           +  F KP LPL+P    +A    + + QV+A   +KA+ G++A ALTASMV+PE+A+AA  G++PSLKNFLLSIAS
Subjt:  MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRPQP--IAASKSSNKFQVRASLKEKAIAGLAATALTASMVLPEVAQAA-DGVTPSLKNFLLSIAS

Query:  GGVVIGAILGAIIGVSNFDPVKRT
        GG+V+  I+G ++GVSNFDPVKRT
Subjt:  GGVVIGAILGAIIGVSNFDPVKRT

Sequences

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CDS sequence

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ATGGCTTCAACCTCTGCAGTTTCAATGGCGATGCCAATCACAAATGCGGCCCCGAGGAGAGCGAGGGGCGTGGCCGAAGCCTTCGCCAAGCCGCTGCTGCCTTTGAGGCC
GCAGCCAATTGCTGCATCGAAATCAAGCAACAAGTTCCAAGTGCGAGCCTCGCTTAAGGAGAAGGCAATTGCAGGGCTCGCCGCAACCGCACTCACTGCCTCCATGGTGC
TTCCTGAAGTGGCTCAAGCCGCAGATGGGGTTACTCCTTCTCTCAAGAATTTCTTGCTCAGTATCGCCTCCGGCGGAGTCGTCATCGGGGCTATCTTGGGGGCCATCATC
GGCGTCTCCAACTTCGACCCCGTCAAGCGGACCTGA

mRNA sequence

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Protein sequence

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MASTSAVSMAMPITNAAPRRARGVAEAFAKPLLPLRPQPIAASKSSNKFQVRASLKEKAIAGLAATALTASMVLPEVAQAADGVTPSLKNFLLSIASGGVVIGAILGAII
GVSNFDPVKRT

Sed0026907 (gene) of Chayote v1 genome