CuGenDBv2

Gene ID	Sed0026958
Organism	Sechium edule (Chayote v1)
Description	HIT-type domain-containing protein
Genome location	LG01:70746233..70749095
RNA-Seq Expression	Sed0026958
Synteny	Sed0026958
Gene Ontology terms	GO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000492 - box C/D snoRNP assembly (biological process) GO:0048254 - snoRNA localization (biological process) GO:0005634 - nucleus (cellular component) GO:0070761 - pre-snoRNP complex (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0045392.1 uncharacterized protein E6C27_scaffold422G00030 [Cucumis melo var. makuwa]

1.2e-27

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Query:  YAFEFKVNCANILLP-------AAPIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS
        YA   KV CA  + P        AP GS VDRPICVGDQNEVLEK QLEAIASSSEIHNILNDE+LRK I A+DSS DPETELDKAMEDEAF IFS+K S
Subjt:  YAFEFKVNCANILLP-------AAPIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS

TYK11348.1 uncharacterized protein E5676_scaffold807G00230 [Cucumis melo var. makuwa]

1.3e-24

70.97

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Query:  YAFEFKVNCANILLPAAPIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS
        YA   KV CA   +         +RPICVGDQNEVLEK QLEAIASSSEIHNILNDE+LRK I A+DSS DPETELDKAMEDEAF IFS+K S
Subjt:  YAFEFKVNCANILLPAAPIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS

XP_008464779.1 PREDICTED: zinc finger HIT domain-containing protein 3 isoform X1 [Cucumis melo]

1.8e-26

85.71

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Query:  APIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS
        AP GS VDRPICVGDQNEVLEK QLEAIASSSEIHNILNDE+LRK I A+DSS DPETELDKAMEDEAF IFS+K S
Subjt:  APIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS

XP_008464781.1 PREDICTED: uncharacterized protein LOC103502587 isoform X2 [Cucumis melo]

2.8e-27

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Query:  YAFEFKVNCANILLP-------AAPIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS
        YA   KV CA  + P        AP GS VDRPICVGDQNEVLEK QLEAIASSSEIHNILNDE+LRK I A+DSS DPETELDKAMEDEAF IFS+K S
Subjt:  YAFEFKVNCANILLP-------AAPIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS

XP_038886971.1 zinc finger HIT domain-containing protein 3 [Benincasa hispida]

1.2e-25

83.54

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Query:  PAAPIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS
        P AP GSLVDRPI V DQNE+LEKLQLEAIASSSEIH+ LN ERL+KLI A+DSS DPETELDKAMEDEAFHIFSTK S
Subjt:  PAAPIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDK5 HIT-type domain-containing protein

1.1e-24

82.43

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Query:  GSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS
        G+ VDRPICVGDQNEVLEK QLEAIASSSEIHNILNDE+L+K I A+DSS DPETE+DKAMEDEAF IFS+K S
Subjt:  GSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS

A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X1

8.7e-27

85.71

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Query:  APIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS
        AP GS VDRPICVGDQNEVLEK QLEAIASSSEIHNILNDE+LRK I A+DSS DPETELDKAMEDEAF IFS+K S
Subjt:  APIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS

A0A1S3CNV6 uncharacterized protein LOC103502587 isoform X2

1.3e-27

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Query:  YAFEFKVNCANILLP-------AAPIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS
        YA   KV CA  + P        AP GS VDRPICVGDQNEVLEK QLEAIASSSEIHNILNDE+LRK I A+DSS DPETELDKAMEDEAF IFS+K S
Subjt:  YAFEFKVNCANILLP-------AAPIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS

A0A5A7TPU7 Uncharacterized protein

6.0e-28

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Query:  YAFEFKVNCANILLP-------AAPIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS
        YA   KV CA  + P        AP GS VDRPICVGDQNEVLEK QLEAIASSSEIHNILNDE+LRK I A+DSS DPETELDKAMEDEAF IFS+K S
Subjt:  YAFEFKVNCANILLP-------AAPIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS

A0A5D3CJI3 Uncharacterized protein

6.3e-25

70.97

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Query:  YAFEFKVNCANILLPAAPIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS
        YA   KV CA   +         +RPICVGDQNEVLEK QLEAIASSSEIHNILNDE+LRK I A+DSS DPETELDKAMEDEAF IFS+K S
Subjt:  YAFEFKVNCANILLPAAPIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G28820.1 HIT-type Zinc finger family protein

6.4e-14

57.97

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Query:  VDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTK
        V RPI V ++  +LEK Q EAIASSSEI   L DE L+KLIY++DSS +P  ELD+AM  EAF  F+ K
Subjt:  VDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTK

AT4G28820.2 HIT-type Zinc finger family protein

6.4e-14

57.97

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Query:  VDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTK
        V RPI V ++  +LEK Q EAIASSSEI   L DE L+KLIY++DSS +P  ELD+AM  EAF  F+ K
Subjt:  VDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTK

Sequences

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CDS sequence

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ATGGAAATAGTGAATAAATATGCATTTGAATTCAAGGTGAACTGTGCCAATATTTTGCTACCAGCTGCTCCTATTGGATCACTTGTAGATAGGCCAATATGTGTTGGAGA
CCAGAATGAAGTATTAGAAAAGTTGCAGCTTGAGGCTATTGCTTCTTCCTCAGAGATACACAATATTTTGAATGATGAAAGACTCCGAAAGCTCATTTACGCCGTTGATA
GTTCACGGGATCCCGAAACTGAGCTTGACAAAGCTATGGAAGATGAAGCATTTCATATATTCAGCACCAAGAATTCTCCACGTGGGAATATACTTTAA

mRNA sequence

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Protein sequence

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MEIVNKYAFEFKVNCANILLPAAPIGSLVDRPICVGDQNEVLEKLQLEAIASSSEIHNILNDERLRKLIYAVDSSRDPETELDKAMEDEAFHIFSTKNSPRGNIL

Sed0026958 (gene) of Chayote v1 genome