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Sed0027028 (gene) of Chayote v1 genome

Gene IDSed0027028
OrganismSechium edule (Chayote v1)
DescriptionBHLH transcription factor
Genome locationLG12:30485292..30485661
RNA-Seq ExpressionSed0027028
SyntenySed0027028
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
NP_001235265.1 Transcription factor PRE3-like [Glycine max]2.6e-2982.61Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ
        MSSRRSRSRQTSSSR+I+DDQINDLV+KLQQLLPEIR R+S+KVS +KVLQ+ C YI +LH EVD LSERL+ELLATTDTAQAAIIRNLLMQ
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ

TKY73406.1 Transcription factor PRE3 [Spatholobus suberectus]4.4e-2982.61Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ
        MSSRRSRSRQTSSSR+I+DDQINDLV+KLQQLLPEIR R+S+KVS +KVLQD C YI +LH EVD LSERL+ELLATTDTAQAAIIRNLL Q
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ

XP_004138158.1 transcription factor PRE3-like [Cucumis sativus]4.4e-2981.52Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ
        MSSRRSRSRQ+ SSRSI+DDQINDLV+KLQQLLPEIRHRQS+KVS +KVLQ+ C YI  LH EVD LSERL+ELLAT+DTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ

XP_008453188.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]2.0e-2982.61Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ
        MSSRRSRSRQ+ SSRSI+DDQINDLV+KLQQLLPEIRHRQS+KVS AKVLQ+ C YI  LH EVD LSERL+ELLAT+DTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ

XP_020234594.1 transcription factor PRE3 [Cajanus cajan]3.4e-2982.61Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ
        MSSRRSRSRQTSSSR+I+DDQINDLV+KLQQLLPEIR R S+KVS +KVLQ+ C YI +LH EVD LSERL+ELLATTDTAQAAIIRNLLMQ
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ

TrEMBL top hitse value%identityAlignment
A0A0B2QKB6 Transcription factor PRE4 isoform A1.3e-2982.61Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ
        MSSRRSRSRQTSSSR+I+DDQINDLV+KLQQLLPEIR R+S+KVS +KVLQ+ C YI +LH EVD LSERL+ELLATTDTAQAAIIRNLLMQ
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ

A0A0L9VNK9 BHLH domain-containing protein6.3e-2980.43Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ
        MSSRRSRSRQT +SR+I+DDQINDLV+KLQQLLPEIR R+S+KVS +KVLQ+ C YI +LH EVD LSERL+ELLATTDTAQAAIIRNLLMQ
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ

A0A1S3BWE2 transcription factor PRE3-like9.6e-3082.61Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ
        MSSRRSRSRQ+ SSRSI+DDQINDLV+KLQQLLPEIRHRQS+KVS AKVLQ+ C YI  LH EVD LSERL+ELLAT+DTAQAAIIR+LLMQ
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ

C6T4Y3 BHLH transcription factor1.3e-2982.61Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ
        MSSRRSRSRQTSSSR+I+DDQINDLV+KLQQLLPEIR R+S+KVS +KVLQ+ C YI +LH EVD LSERL+ELLATTDTAQAAIIRNLLMQ
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ

I3S777 BHLH domain-containing protein3.7e-2981.52Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ
        MSSRRSRSRQTSSSR+I+DDQI+DLV+KLQQLLPEIR R+S+KVS +KVLQ+ C YI +LH EVD LSERL+ELLATTDTAQAAIIRNLLMQ
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI62.5e-2266.67Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTD--TAQAAIIRNLLM
        MSSRRSRSRQ+ SSR I+D+QI+DLV+KLQ LLPE R R +++V  ++VLQ+ C YI +LH+EVD LSERL+ELLAT+D  +AQAAIIR+LLM
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTD--TAQAAIIRNLLM

Q0DUR2 Transcription factor ILI62.5e-2266.67Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTD--TAQAAIIRNLLM
        MSSRRSRSRQ+ SSR I+D+QI+DLV+KLQ LLPE R R +++V  ++VLQ+ C YI +LH+EVD LSERL+ELLAT+D  +AQAAIIR+LLM
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTD--TAQAAIIRNLLM

Q338G6 Transcription factor ILI73.0e-2064.84Show/hide
Query:  SRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTD--TAQAAIIRNLLM
        SRRSRSR +S++R I+D+QI DLV+KLQ LLPE R R +++V  A+VLQ+ C YI +LH EVD LSERLAELLA  D  TAQAA+IR LLM
Subjt:  SRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTD--TAQAAIIRNLLM

Q8GW32 Transcription factor PRE62.5e-2268.82Show/hide
Query:  MSSRR-SRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTD--TAQAAIIRNLL
        MSSRR SRSRQ+ SSR ISDDQI+DLV+KLQ L+PE+R R+S+KVS +KVLQ+ C YI  LH EVD LS+RL+ELLA+TD  +A+AAIIR+LL
Subjt:  MSSRR-SRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTD--TAQAAIIRNLL

Q9CA64 Transcription factor PRE33.1e-2569.89Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIR-HRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ
        MS RRSRSRQ+S +  IS+DQINDL+ KLQQLLPE+R  R+S+KVS A+VLQD C YI  LH EVD LSERL+ELLA +DTAQAA+IR+LL Q
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIR-HRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.7e-2368.82Show/hide
Query:  MSSRR-SRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTD--TAQAAIIRNLL
        MSSRR SRSRQ+ SSR ISDDQI+DLV+KLQ L+PE+R R+S+KVS +KVLQ+ C YI  LH EVD LS+RL+ELLA+TD  +A+AAIIR+LL
Subjt:  MSSRR-SRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTD--TAQAAIIRNLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 12.2e-2669.89Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIR-HRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ
        MS RRSRSRQ+S +  IS+DQINDL+ KLQQLLPE+R  R+S+KVS A+VLQD C YI  LH EVD LSERL+ELLA +DTAQAA+IR+LL Q
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIR-HRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.7e-1858.51Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEI-RHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATT--DTAQAAIIRNLLM
        MS+R  RSRQTS++  ISDDQ+ DLV+KL+Q LPEI   R+S+KVS +KVLQ+ C YI  LH EVD LS+RL++LL +   D+ +AA+IR+LLM
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEI-RHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATT--DTAQAAIIRNLLM

AT3G47710.1 BANQUO 32.1e-2162.37Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEI-RHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ
        MSSR+SRSRQT +S  I+D+QINDLV +L +LLPE+  +R+S KVS ++VLQ+ C YI  L +EVD LSERL++LL +TD+AQAA+IR+LLMQ
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEI-RHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein2.4e-1756.38Show/hide
Query:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEI-RHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATT--DTAQAAIIRNLLM
        MS+R  RSRQ+SS+  ISD+Q+ DLV+KL+Q+LPEI + R+S+K S +KVLQ+ C YI  L+ EVD LSERL++LL +   D+ +AA+IR+LLM
Subjt:  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEI-RHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATT--DTAQAAIIRNLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGCAGAAGATCCAGATCTAGGCAAACAAGCAGCTCGAGATCAATCTCCGACGACCAAATCAACGATCTCGTTACCAAATTGCAGCAACTTCTCCCCGAGATTCG
CCACAGGCAATCCGAAAAGGTTTCGCCTGCAAAAGTGTTGCAAGACATATGTAAGTACATAACGACGCTGCACGAAGAGGTGGATGGATTGAGTGAGAGGCTTGCAGAGT
TGTTGGCAACTACTGATACTGCTCAAGCTGCCATTATTAGGAACTTACTTATGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGCAGAAGATCCAGATCTAGGCAAACAAGCAGCTCGAGATCAATCTCCGACGACCAAATCAACGATCTCGTTACCAAATTGCAGCAACTTCTCCCCGAGATTCG
CCACAGGCAATCCGAAAAGGTTTCGCCTGCAAAAGTGTTGCAAGACATATGTAAGTACATAACGACGCTGCACGAAGAGGTGGATGGATTGAGTGAGAGGCTTGCAGAGT
TGTTGGCAACTACTGATACTGCTCAAGCTGCCATTATTAGGAACTTACTTATGCAATAG
Protein sequenceShow/hide protein sequence
MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ