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Sed0027035 (gene) of Chayote v1 genome

Gene IDSed0027035
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 12
Genome locationLG01:13222819..13225111
RNA-Seq ExpressionSed0027035
SyntenySed0027035
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006591 - RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR039747 - DNA-directed RNA polymerases I, II, and III subunit RPABC4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RZC92788.1 hypothetical protein C5167_029517 [Papaver somniferum]1.1e-2196.08Show/hide
Query:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRT+RIVQYEAR
Subjt:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_003534102.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max]5.0e-2298.04Show/hide
Query:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_014507408.2 DNA-directed RNA polymerases II, IV and V subunit 12 [Vigna radiata var. radiata]5.0e-2298.04Show/hide
Query:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_020244053.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Asparagus officinalis]8.5e-2298.04Show/hide
Query:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_021658712.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Hevea brasiliensis]6.5e-2296.08Show/hide
Query:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRI+QYEAR
Subjt:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

TrEMBL top hitse value%identityAlignment
A0A1S3UMW8 DNA-directed RNA polymerases II, IV and V subunit 122.4e-2298.04Show/hide
Query:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

A0A1U8AQX5 DNA-directed RNA polymerases II, IV and V subunit 122.4e-2298.04Show/hide
Query:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

A0A2I4F5W9 DNA-directed RNA polymerases II, IV and V subunit 122.4e-2298.04Show/hide
Query:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

A0A6A5MJT3 Putative RNA polymerase archaeal subunit P/eukaryotic subunit RPABC42.4e-2298.04Show/hide
Query:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

C6T1P2 Uncharacterized protein2.4e-2298.04Show/hide
Query:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

SwissProt top hitse value%identityAlignment
P48011 DNA-directed RNA polymerases I, II, and III subunit RPABC44.8e-1255.1Show/hide
Query:  PQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+P  + Y+C DCG  NT++  +VI+CRECG+R++YK RT+R+VQ+EAR
Subjt:  PQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

P53803 DNA-directed RNA polymerases I, II, and III subunit RPABC42.2e-1257.14Show/hide
Query:  PQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+ +P+ Y+CG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Subjt:  PQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

Q3ZBC0 DNA-directed RNA polymerases I, II, and III subunit RPABC42.2e-1257.14Show/hide
Query:  PQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+ +P+ Y+CG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Subjt:  PQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

Q63871 DNA-directed RNA polymerases I, II, and III subunit RPABC42.2e-1257.14Show/hide
Query:  PQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+ +P+ Y+CG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Subjt:  PQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

Q9FLM8 DNA-directed RNA polymerases II, IV and V subunit 122.3e-2290.2Show/hide
Query:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDP PEPV+YVCGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Subjt:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

Arabidopsis top hitse value%identityAlignment
AT1G53690.1 DNA directed RNA polymerase, 7 kDa subunit2.2e-1275.61Show/hide
Query:  DPQPEP-VSYVCGDCGMENTLKPGDVIQCRECGYRILYKKR
        D QPE  V YVCGDCG EN LK GDV QCR+CG+RILYKKR
Subjt:  DPQPEP-VSYVCGDCGMENTLKPGDVIQCRECGYRILYKKR

AT5G41010.1 DNA directed RNA polymerase, 7 kDa subunit1.6e-2390.2Show/hide
Query:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDP PEPV+YVCGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Subjt:  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTCAACCCGAACCCGTCAGCTACGTCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCCGGGCGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCT
CTACAAGAAGCGCACCCGTCGCATTGTTCAGTATGAGGCACGCTGA
mRNA sequenceShow/hide mRNA sequence
CAATCATCAAGCGCATCTTCTTCCCGGTTCTGGAAGCTTTTCGAAGTTTGATTCATGGATCCTCAACCCGAACCCGTCAGCTACGTCTGTGGAGATTGTGGAATGGAGAA
CACTCTGAAGCCGGGCGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCATTGTTCAGTATGAGGCACGCTGAAATGCTTATT
CTGGCGATGGACTTTCAGTATCATTGAATATTTTGTAAGTCTCTTTTAGTTAAAACAAAAGTAGAACTCAATGTCTCGAAGACTTCATCGTTATACAAACATGTAATATT
GCTGCCATTATTATTGCATGTAGACCTACAGAACTCAATCAACATCCATCCGTGAAACCAAATGGTTTTTTTTCATTTACGGTGAATATTTGCCACACTTTAAAACTCCC
AAATTTTTG
Protein sequenceShow/hide protein sequence
MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR