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Sed0027044 (gene) of Chayote v1 genome

Gene IDSed0027044
OrganismSechium edule (Chayote v1)
DescriptionProtein IDA
Genome locationLG06:42916180..42916461
RNA-Seq ExpressionSed0027044
SyntenySed0027044
Gene Ontology termsGO:0010227 - floral organ abscission (biological process)
InterPro domainsIPR039639 - Protein IDA-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034518.1 putative Membrane lipoprotein [Cucumis melo var. makuwa]1.4e-1966Show/hide
Query:  ASSSSSSSSSSPSF-------AIFVLSLLLLCGFCSAIRPGKTMD-SDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN
        +SSSSSSSSSS SF        IF+L LLLL GF SA RPG TM+  DMSN SN ++     T FRY GQTF FLP+GVPIPPSGPSDRHNSV+DS+PPN
Subjt:  ASSSSSSSSSSPSF-------AIFVLSLLLLCGFCSAIRPGKTMD-SDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN

KAG6601330.1 Protein IDA, partial [Cucurbita argyrosperma subsp. sororia]1.1e-2471.74Show/hide
Query:  ASSSSSSSSSSPSFAIFVLSLLLLCGFCSAIRPGKTMDSDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN
        +SSSSSSSSSS   AIFVL LLL+ GFCSA RPGKTM  ++       S F+YKTGFRYVGQTFS+LPRGVPIPPSGPSDRHNS++DS+PP+
Subjt:  ASSSSSSSSSSPSFAIFVLSLLLLCGFCSAIRPGKTMDSDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN

KAG7032113.1 Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-2370.79Show/hide
Query:  SSSSSSSSPSFAIFVLSLLLLCGFCSAIRPGKTMDSDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN
        SSSSSSSS   AIFVL LLL+ GFCSA RPGKTM  ++         F+YKTGFRYVGQTFS+LPRGVPIPPSGPSDRHNS++DS+PP+
Subjt:  SSSSSSSSPSFAIFVLSLLLLCGFCSAIRPGKTMDSDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN

KGN52035.1 hypothetical protein Csa_008746 [Cucumis sativus]1.2e-1866.29Show/hide
Query:  SSSSSSSSPSFAIFVLSLLLLCGFCSAIRPGKTMDSDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN
        SSSS +S P F I +L LLLL G  SA RPGKTM+    N     S   YKT FRY GQTFSFLP+GVPIPPSGPSDRHNSV+DS+PPN
Subjt:  SSSSSSSSPSFAIFVLSLLLLCGFCSAIRPGKTMDSDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN

TYK09072.1 putative Membrane lipoprotein [Cucumis melo var. makuwa]1.4e-1966Show/hide
Query:  ASSSSSSSSSSPSF-------AIFVLSLLLLCGFCSAIRPGKTMD-SDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN
        +SSSSSSSSSS SF        IF+L LLLL GF SA RPG TM+  DMSN SN ++     T FRY GQTF FLP+GVPIPPSGPSDRHNSV+DS+PPN
Subjt:  ASSSSSSSSSSPSF-------AIFVLSLLLLCGFCSAIRPGKTMD-SDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN

TrEMBL top hitse value%identityAlignment
A0A0A0KR07 Uncharacterized protein5.9e-1966.29Show/hide
Query:  SSSSSSSSPSFAIFVLSLLLLCGFCSAIRPGKTMDSDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN
        SSSS +S P F I +L LLLL G  SA RPGKTM+    N     S   YKT FRY GQTFSFLP+GVPIPPSGPSDRHNSV+DS+PPN
Subjt:  SSSSSSSSPSFAIFVLSLLLLCGFCSAIRPGKTMDSDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN

A0A2P6R1Y4 Uncharacterized protein4.1e-1246.94Show/hide
Query:  ASSSSSSSSSSPSFAIFVLSLLLLCGFCSAIRPGKTM-DSDM-----SNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN
        +SSSSSSS S   +  F+  +LLL G C+A R GKT+ D D        H+ + +   ++T FR+ G+ FSF P+G P+PPSGPS RHNSV++S P N
Subjt:  ASSSSSSSSSSPSFAIFVLSLLLLCGFCSAIRPGKTM-DSDM-----SNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN

A0A5A7SV51 Putative Membrane lipoprotein7.0e-2066Show/hide
Query:  ASSSSSSSSSSPSF-------AIFVLSLLLLCGFCSAIRPGKTMD-SDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN
        +SSSSSSSSSS SF        IF+L LLLL GF SA RPG TM+  DMSN SN ++     T FRY GQTF FLP+GVPIPPSGPSDRHNSV+DS+PPN
Subjt:  ASSSSSSSSSSPSF-------AIFVLSLLLLCGFCSAIRPGKTMD-SDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN

A0A5D3CCP4 Putative Membrane lipoprotein7.0e-2066Show/hide
Query:  ASSSSSSSSSSPSF-------AIFVLSLLLLCGFCSAIRPGKTMD-SDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN
        +SSSSSSSSSS SF        IF+L LLLL GF SA RPG TM+  DMSN SN ++     T FRY GQTF FLP+GVPIPPSGPSDRHNSV+DS+PPN
Subjt:  ASSSSSSSSSSPSF-------AIFVLSLLLLCGFCSAIRPGKTMD-SDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN

V4TCI5 PARP catalytic domain-containing protein2.0e-1152.63Show/hide
Query:  MASSSSSSSS-----SSPSFAIFVLSLLLLCGFCSAIRPGKTMDS-DMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDS
        MASSSSSSSS     S     +  L +++L G C A RPG TMDS ++  H         KT FRY  Q F+FLP+G PIPPSGPS RHNSV+DS
Subjt:  MASSSSSSSS-----SSPSFAIFVLSLLLLCGFCSAIRPGKTMDS-DMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDS

SwissProt top hitse value%identityAlignment
Q8LAD7 Protein IDA4.0e-0437.84Show/hide
Query:  FVLSLLLLCGFCSAIRPGKTMDSDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVP
        FVL L       +A R G TM+           +  +K         F +LP+GVPIPPS PS RHNS ++S+P
Subjt:  FVLSLLLLCGFCSAIRPGKTMDSDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVP

Arabidopsis top hitse value%identityAlignment
AT1G68765.1 Putative membrane lipoprotein2.8e-0537.84Show/hide
Query:  FVLSLLLLCGFCSAIRPGKTMDSDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVP
        FVL L       +A R G TM+           +  +K         F +LP+GVPIPPS PS RHNS ++S+P
Subjt:  FVLSLLLLCGFCSAIRPGKTMDSDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCAAGTTTCGCCATTTTCGTTCTTTCTCTGCTTCTTCTTTGTGGGTTTTGCTCTGCAATTCGGCCTGGAAAAAC
CATGGATTCCGACATGTCGAATCATTCTAATCAACAATCAAAATTCGATTACAAGACAGGGTTCCGATATGTCGGCCAAACCTTCAGCTTTCTCCCCAGAGGCGTTCCGA
TTCCTCCTTCAGGCCCTTCCGACAGACACAACTCTGTTCTTGACTCTGTTCCTCCAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCAAGTTTCGCCATTTTCGTTCTTTCTCTGCTTCTTCTTTGTGGGTTTTGCTCTGCAATTCGGCCTGGAAAAAC
CATGGATTCCGACATGTCGAATCATTCTAATCAACAATCAAAATTCGATTACAAGACAGGGTTCCGATATGTCGGCCAAACCTTCAGCTTTCTCCCCAGAGGCGTTCCGA
TTCCTCCTTCAGGCCCTTCCGACAGACACAACTCTGTTCTTGACTCTGTTCCTCCAAATTAA
Protein sequenceShow/hide protein sequence
MASSSSSSSSSSPSFAIFVLSLLLLCGFCSAIRPGKTMDSDMSNHSNQQSKFDYKTGFRYVGQTFSFLPRGVPIPPSGPSDRHNSVLDSVPPN