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Sed0027049 (gene) of Chayote v1 genome

Gene IDSed0027049
OrganismSechium edule (Chayote v1)
DescriptionNucleolar protein 16, putative
Genome locationLG11:29844558..29844989
RNA-Seq ExpressionSed0027049
SyntenySed0027049
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011656615.1 uncharacterized protein LOC105435757 [Cucumis sativus]7.3e-6386.11Show/hide
Query:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA
        MARQLQ++ H SQGTAQ GMAGVSLLLCAFAL MCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQR     VN TEPENGNDEMFFSREQQA
Subjt:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA

Query:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK
        ++W KNILMGGKCQLPDFSGVILYDPNGN  TPAK+  PLLTWK
Subjt:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK

XP_022959632.1 uncharacterized protein LOC111460648 [Cucurbita moschata]8.3e-6786.81Show/hide
Query:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA
        MARQLQMM H SQ TAQ GMAG SLLLCAFAL MCASHARKWR RWNACLDYGYEFEDPVIELNQEATVVTTQR + C+VNA EPENGNDEMFFSREQ+A
Subjt:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA

Query:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK
        AVW+KNILMGGKCQLPDFSGVILYD NGNV TPA++ LPLLTWK
Subjt:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK

XP_022990795.1 uncharacterized protein LOC111487577 [Cucurbita maxima]2.4e-6686.11Show/hide
Query:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA
        MARQLQMM H SQ TAQ GMAG SLLLCAFAL MCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQR + C+VNATEPEN NDEMFFSREQ+A
Subjt:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA

Query:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK
         VW+KNILMGGKCQLPDFSGVILYD NGNV TPA++  PLLTWK
Subjt:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK

XP_023512486.1 uncharacterized protein LOC111777221 [Cucurbita pepo subsp. pepo]4.4e-6888.19Show/hide
Query:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA
        MARQLQMM H SQ TAQ GMAG SLLLCAFAL MCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQR + C+VNATEPENGNDEMFFSREQ+A
Subjt:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA

Query:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK
        AVW+KNILMGGKCQLPDFSGVILYD NGNV TPA++ LPLLTWK
Subjt:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK

XP_038886392.1 uncharacterized protein LOC120076591 [Benincasa hispida]2.9e-6788.89Show/hide
Query:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA
        MARQLQMM HPSQ TAQ GMAGVSLLLCAFAL MCASHARKWRRRWNACLDYGYEFEDPVIELNQEATV+TTQR +AC+VNATE EN NDEMFFSREQQA
Subjt:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA

Query:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK
        A+WQKNILMGGKCQLPDFSGVILYDPNGN  TPAK+  PLLTWK
Subjt:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK

TrEMBL top hitse value%identityAlignment
A0A0A0K8P1 Uncharacterized protein3.5e-6386.11Show/hide
Query:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA
        MARQLQ++ H SQGTAQ GMAGVSLLLCAFAL MCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQR     VN TEPENGNDEMFFSREQQA
Subjt:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA

Query:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK
        ++W KNILMGGKCQLPDFSGVILYDPNGN  TPAK+  PLLTWK
Subjt:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK

A0A5A7SQ79 Putative Nucleolar protein 163.3e-6184.03Show/hide
Query:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA
        MARQLQ++ H SQGT Q GMAGVSLLLCAFAL MCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTT +     VNATEPEN N+EMFFSREQQA
Subjt:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA

Query:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK
        ++W KNILMGGKCQLPDFSGVILYDPNGNV TPAK+  PLLTWK
Subjt:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK

A0A6J1C1Z5 uncharacterized protein LOC1110066831.9e-6184.72Show/hide
Query:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA
        MARQLQ++ HP QGTAQ GMAGVSLL CAFAL MCASHARKWRRRWNACLDYG+EFEDPVIELNQEATVVTT RA     NATE ENGNDEMFFSREQQA
Subjt:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA

Query:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK
        AVWQKNILMGGKCQLPDFSGVILYD +GN  TPAK+  PLLTWK
Subjt:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK

A0A6J1H530 uncharacterized protein LOC1114606484.0e-6786.81Show/hide
Query:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA
        MARQLQMM H SQ TAQ GMAG SLLLCAFAL MCASHARKWR RWNACLDYGYEFEDPVIELNQEATVVTTQR + C+VNA EPENGNDEMFFSREQ+A
Subjt:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA

Query:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK
        AVW+KNILMGGKCQLPDFSGVILYD NGNV TPA++ LPLLTWK
Subjt:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK

A0A6J1JR28 uncharacterized protein LOC1114875771.2e-6686.11Show/hide
Query:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA
        MARQLQMM H SQ TAQ GMAG SLLLCAFAL MCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQR + C+VNATEPEN NDEMFFSREQ+A
Subjt:  MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQA

Query:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK
         VW+KNILMGGKCQLPDFSGVILYD NGNV TPA++  PLLTWK
Subjt:  AVWQKNILMGGKCQLPDFSGVILYDPNGNVATPAKS-LPLLTWK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49000.1 unknown protein2.7e-0748.89Show/hide
Query:  ENGNDEMFFSREQQAAVWQKNILMGGKCQLPDFSGVILYDPNGNV
        +N  +E   + E++  +WQ+ ILMGGKC+  DFSGVI YD NG +
Subjt:  ENGNDEMFFSREQQAAVWQKNILMGGKCQLPDFSGVILYDPNGNV

AT1G71740.1 unknown protein1.8e-2244.44Show/hide
Query:  PSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQ-QAAVWQKNILM
        P   T    +  + L   +  L+  ASH+++  RRW AC  YG    +PVI L  + T++                NG+  M  S +Q +  +WQKNILM
Subjt:  PSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQ-QAAVWQKNILM

Query:  GGKCQLPDFSGVILYDPNGNVATPAK-SLPLLTWK
        GGKCQLPDFSGVILYD +G V  PAK SLPLLTWK
Subjt:  GGKCQLPDFSGVILYDPNGNVATPAK-SLPLLTWK

AT3G14760.1 unknown protein3.3e-0567.86Show/hide
Query:  VWQKNILMGGKCQLPDFSGVILYDPNGN
        VWQ+ ILMG KC+LP FSG+ILYD  G+
Subjt:  VWQKNILMGGKCQLPDFSGVILYDPNGN

AT3G18560.1 unknown protein8.7e-0657.58Show/hide
Query:  EQQAAVWQKNILMGGKCQLPDFSGVILYDPNGN
        E++  VWQ+ ILMGGKC+  D+SGVI YD +G+
Subjt:  EQQAAVWQKNILMGGKCQLPDFSGVILYDPNGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGGCAATTGCAAATGATGCATCATCCTTCACAAGGCACAGCTCAGTTTGGCATGGCTGGTGTTAGCCTTCTCTTGTGTGCTTTTGCATTGCTCATGTGTGCTTC
CCATGCTCGAAAATGGCGTCGTCGCTGGAACGCTTGTTTGGATTATGGCTACGAGTTTGAGGATCCTGTAATAGAGCTTAACCAAGAAGCAACTGTCGTGACTACGCAAC
GAGCGGATGCCTGCATCGTGAATGCCACTGAGCCGGAGAATGGCAATGATGAAATGTTCTTCAGTAGAGAGCAACAAGCTGCTGTGTGGCAGAAGAATATACTCATGGGC
GGGAAGTGCCAGCTACCGGACTTCTCGGGCGTCATATTATACGACCCGAATGGAAATGTTGCAACGCCAGCAAAATCTCTACCTCTACTCACTTGGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGGCAATTGCAAATGATGCATCATCCTTCACAAGGCACAGCTCAGTTTGGCATGGCTGGTGTTAGCCTTCTCTTGTGTGCTTTTGCATTGCTCATGTGTGCTTC
CCATGCTCGAAAATGGCGTCGTCGCTGGAACGCTTGTTTGGATTATGGCTACGAGTTTGAGGATCCTGTAATAGAGCTTAACCAAGAAGCAACTGTCGTGACTACGCAAC
GAGCGGATGCCTGCATCGTGAATGCCACTGAGCCGGAGAATGGCAATGATGAAATGTTCTTCAGTAGAGAGCAACAAGCTGCTGTGTGGCAGAAGAATATACTCATGGGC
GGGAAGTGCCAGCTACCGGACTTCTCGGGCGTCATATTATACGACCCGAATGGAAATGTTGCAACGCCAGCAAAATCTCTACCTCTACTCACTTGGAAGTGA
Protein sequenceShow/hide protein sequence
MARQLQMMHHPSQGTAQFGMAGVSLLLCAFALLMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRADACIVNATEPENGNDEMFFSREQQAAVWQKNILMG
GKCQLPDFSGVILYDPNGNVATPAKSLPLLTWK