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Sed0027051 (gene) of Chayote v1 genome

Gene IDSed0027051
OrganismSechium edule (Chayote v1)
Descriptionlight-regulated protein-like
Genome locationLG07:1256616..1257250
RNA-Seq ExpressionSed0027051
SyntenySed0027051
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR009856 - Light regulated Lir1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576101.1 Light-regulated protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.0e-5683.21Show/hide
Query:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA
        MQ QAA SLA PSSC L PPTTK M FSIP+RS++RHPTSQT RP L  KASAVGQDP+TVDYSS+SSVFPAEAC+TVGGEACDV+MYPE KLKPEAK  
Subjt:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA

Query:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPE
        GSVSE VDREYLQYDSPKTVFPAEACDDLGGEFCDP+
Subjt:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPE
XP_022953556.1 light-regulated protein-like [Cucurbita moschata]4.7e-6285.31Show/hide
Query:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA
        MQ QAA SLA PSSC L PPTTK M FSIP+RS++RHPTSQT RP L  KASAVGQDP+TVDYSS+SSVFPAEAC+TVGGEACDV+MYPE KLKPEAKK 
Subjt:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA

Query:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSVSE VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
XP_022991991.1 light-regulated protein, chloroplastic-like [Cucurbita maxima]2.8e-6285.31Show/hide
Query:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA
        MQ QAA SLA PSSC L PPTTK M FS+P+RS++RHPTSQT RP L  KASAVGQDP+TVDYSSVSSVFPAEAC+TVGGEACDV+MYPE KLKPEAKK 
Subjt:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA

Query:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSVSE VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
XP_023547464.1 light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo]6.2e-6286.01Show/hide
Query:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA
        MQ QAA SLA PSSC L PPTTK M FSIP+RS +RHPTSQT RP L  KASAVGQDP+TVDYSSVSSVFPAEAC+TVGGEACDV+MYPE KLKPEAKK 
Subjt:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA

Query:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSVSE VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
XP_038906788.1 light-regulated protein, chloroplastic-like [Benincasa hispida]1.1e-6386.01Show/hide
Query:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA
        MQ QAALS+A PSSCSL PPT KSM FS+ +RS+ RHPTSQTQRP L  KASAVGQDP+TVDYSS+SSVFPAEACDTVGGEACDV+MYPE KLKPEAKK 
Subjt:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA

Query:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSV+EPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
TrEMBL top hitse value%identityAlignment
A0A1S3CBQ8 light-regulated protein-like6.0e-5579.72Show/hide
Query:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA
        MQ QAALS+APP SCSL PPT K M FSI TRSL R       + TL  KASAVGQ+P+TVDYSS+SSVFPAEACDTVGGEACDV+MYPE KLKPEAKK 
Subjt:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA

Query:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SV+EPV+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
A0A5D3DLY7 Light-regulated protein-like4.6e-5579.72Show/hide
Query:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA
        MQ QAALS+APP SCSL PPT K M FSI TRSL R       + TL  KASAVGQ+P+TVDYSS+SSVFPAEACDTVGGEACDV+MYPE KLKPEAKK 
Subjt:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA

Query:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SV+EPV+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
A0A6J1GNA5 light-regulated protein-like2.3e-6285.31Show/hide
Query:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA
        MQ QAA SLA PSSC L PPTTK M FSIP+RS++RHPTSQT RP L  KASAVGQDP+TVDYSS+SSVFPAEAC+TVGGEACDV+MYPE KLKPEAKK 
Subjt:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA

Query:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSVSE VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
A0A6J1JSC1 light-regulated protein, chloroplastic-like1.3e-6285.31Show/hide
Query:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA
        MQ QAA SLA PSSC L PPTTK M FS+P+RS++RHPTSQT RP L  KASAVGQDP+TVDYSSVSSVFPAEAC+TVGGEACDV+MYPE KLKPEAKK 
Subjt:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA

Query:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSVSE VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Q39636 CR9 protein1.1e-5681.12Show/hide
Query:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA
        MQFQAALS+A P SCSL PPT KSM FSIPTRS+ R       + TL  KASAVGQDP+TVDYSS+SSVFPAEACDTVGGEACDV+MYPE KLKPEAKK 
Subjt:  MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKA

Query:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SV+EPV+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVSEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
SwissProt top hitse value%identityAlignment
Q03200 Light-regulated protein, chloroplastic9.1e-2457.66Show/hide
Query:  SIPTRSLQRHPTSQTQRPTLHVK--ASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKAGS--VSEPVDREYLQYDSPKTVFPA
        ++  RSLQ       +R  L V+  A+AV  + A VDYSS  SVFP EACD +GGEAC+V MYPEAKL   A  A S   +E VDR+YL YD P TVFP 
Subjt:  SIPTRSLQRHPTSQTQRPTLHVK--ASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKAGS--VSEPVDREYLQYDSPKTVFPA

Query:  EACDDLGGEFC
        EACDDLGGEFC
Subjt:  EACDDLGGEFC
Q96500 Light-regulated protein 1, chloroplastic1.1e-2448.51Show/hide
Query:  SLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDY-SSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKAGSVSEP
        S++ P    L P  TK+   S    SL+ + +S          +S++  DP TVDY SS+ SVFPAEAC+ + G AC  D+YPE KL  +       SEP
Subjt:  SLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDY-SSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKAGSVSEP

Query:  VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK
        VDREY +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK
Arabidopsis top hitse value%identityAlignment
AT3G26740.1 CCR-like7.6e-2648.51Show/hide
Query:  SLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDY-SSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKAGSVSEP
        S++ P    L P  TK+   S    SL+ + +S          +S++  DP TVDY SS+ SVFPAEAC+ + G AC  D+YPE KL  +       SEP
Subjt:  SLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDY-SSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKAGSVSEP

Query:  VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK
        VDREY +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTTTCAGGCAGCTCTTTCCCTAGCACCTCCATCATCATGCTCCCTCTTTCCACCAACCACCAAATCAATGGTCTTCTCAATCCCCACAAGGTCCCTGCAAAGGCA
CCCCACTTCTCAAACTCAGCGTCCCACCCTACACGTAAAGGCAAGCGCGGTTGGGCAAGACCCGGCAACCGTCGACTACAGCTCCGTCTCCTCAGTTTTTCCAGCTGAGG
CTTGTGACACTGTTGGAGGGGAAGCTTGTGATGTTGATATGTATCCTGAAGCTAAGCTAAAACCTGAGGCCAAGAAAGCGGGTAGTGTTTCAGAGCCTGTGGATAGAGAG
TATCTACAATATGACAGTCCCAAGACAGTTTTTCCAGCGGAGGCTTGTGATGATCTGGGCGGTGAGTTCTGTGATCCAGAGTATCAAAAAGGAGTTTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGTTTCAGGCAGCTCTTTCCCTAGCACCTCCATCATCATGCTCCCTCTTTCCACCAACCACCAAATCAATGGTCTTCTCAATCCCCACAAGGTCCCTGCAAAGGCA
CCCCACTTCTCAAACTCAGCGTCCCACCCTACACGTAAAGGCAAGCGCGGTTGGGCAAGACCCGGCAACCGTCGACTACAGCTCCGTCTCCTCAGTTTTTCCAGCTGAGG
CTTGTGACACTGTTGGAGGGGAAGCTTGTGATGTTGATATGTATCCTGAAGCTAAGCTAAAACCTGAGGCCAAGAAAGCGGGTAGTGTTTCAGAGCCTGTGGATAGAGAG
TATCTACAATATGACAGTCCCAAGACAGTTTTTCCAGCGGAGGCTTGTGATGATCTGGGCGGTGAGTTCTGTGATCCAGAGTATCAAAAAGGAGTTTACTAG
Protein sequenceShow/hide protein sequence
MQFQAALSLAPPSSCSLFPPTTKSMVFSIPTRSLQRHPTSQTQRPTLHVKASAVGQDPATVDYSSVSSVFPAEACDTVGGEACDVDMYPEAKLKPEAKKAGSVSEPVDRE
YLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY