; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0027056 (gene) of Chayote v1 genome

Gene IDSed0027056
OrganismSechium edule (Chayote v1)
DescriptionF-box domain-containing protein
Genome locationLG10:32514061..32515245
RNA-Seq ExpressionSed0027056
SyntenySed0027056
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039267.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa]2.3e-1848.8Show/hide
Query:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEA
        DRISLLPD LLH ILS  ++K VVQTC+LSKRWK+LW   PTLN           FN+  EESK  S + F+   L+KH +  I+KL++ SS + D  E+
Subjt:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEA

Query:  LLIADLLLCYARHHTVRQIHLNLFN
        +L+ +LL+CYA  H V+Q+ +N +N
Subjt:  LLIADLLLCYARHHTVRQIHLNLFN

KAE8649006.1 hypothetical protein Csa_008454 [Cucumis sativus]7.0e-2352.38Show/hide
Query:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFN---------FQCEE---SKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHE
        DRISLLPD LLHEILSF+++KSVVQTCVLSKRWK+LW E PTLNF+         F+ EE   SK  S + F+   L+K R+  I+KL++  +SS + ++
Subjt:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFN---------FQCEE---SKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHE

Query:  ALLIADLLLCYARHHTVRQIHLNLFN
          ++AD L+ YAR H+V+Q+ LN FN
Subjt:  ALLIADLLLCYARHHTVRQIHLNLFN

XP_004141639.1 F-box/LRR-repeat protein At3g26922 [Cucumis sativus]7.0e-2352.38Show/hide
Query:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFN---------FQCEE---SKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHE
        DRISLLPD LLHEILSF+++KSVVQTCVLSKRWK+LW E PTLNF+         F+ EE   SK  S + F+   L+K R+  I+KL++  +SS + ++
Subjt:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFN---------FQCEE---SKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHE

Query:  ALLIADLLLCYARHHTVRQIHLNLFN
          ++AD L+ YAR H+V+Q+ LN FN
Subjt:  ALLIADLLLCYARHHTVRQIHLNLFN

XP_008459617.1 PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo]4.0e-1848.8Show/hide
Query:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEA
        DRISLLPD LLH ILS  ++K VVQTC+LSKRWK+LW   PTLN           FN+  EESK  S + F+   L+KH +  I+KL++ SS + D  E+
Subjt:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEA

Query:  LLIADLLLCYARHHTVRQIHLNLFN
        +L+ +LL+CYA  H V+Q+ +N +N
Subjt:  LLIADLLLCYARHHTVRQIHLNLFN

XP_008459618.1 PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X2 [Cucumis melo]1.6e-1930.33Show/hide
Query:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEA
        DRISLLPD LLH ILS  ++K VVQTC+LSKRWK+LW   PTLN           FN+  EESK  S + F+   L+KH +  I+KL++ SS + D  E+
Subjt:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEA

Query:  LLIADLLLCYARHHTVRQIHLNLFNT---------PLKADLL--------------------------CN------------------------------
        +L+ +LL+CYA  H V+Q+ +N +N          P+ + L+                          C+                              
Subjt:  LLIADLLLCYARHHTVRQIHLNLFNT---------PLKADLL--------------------------CN------------------------------

Query:  ----------------------------KEVNMTVDDSHFVGGDDSVLHMLKETIPHLLQVFHYAHSFTLPWKAMEMILSDPSDLRVVFFRNLRYLKLKT
                                    ++V++ + DS F   D S    LK     LL V H A SFTLP KA ++I    S  + + F N+R+L+LKT
Subjt:  ----------------------------KEVNMTVDDSHFVGGDDSVLHMLKETIPHLLQVFHYAHSFTLPWKAMEMILSDPSDLRVVFFRNLRYLKLKT

Query:  NATDRNTNLSVATVMNSLNCPKLQKLEFVLNQE
          +D         + + L  PKL+ +  VLN++
Subjt:  NATDRNTNLSVATVMNSLNCPKLQKLEFVLNQE

TrEMBL top hitse value%identityAlignment
A0A0A0KSW6 F-box domain-containing protein3.4e-2352.38Show/hide
Query:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFN---------FQCEE---SKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHE
        DRISLLPD LLHEILSF+++KSVVQTCVLSKRWK+LW E PTLNF+         F+ EE   SK  S + F+   L+K R+  I+KL++  +SS + ++
Subjt:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFN---------FQCEE---SKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHE

Query:  ALLIADLLLCYARHHTVRQIHLNLFN
          ++AD L+ YAR H+V+Q+ LN FN
Subjt:  ALLIADLLLCYARHHTVRQIHLNLFN

A0A1S3CB41 F-box/LRR-repeat protein At3g26922-like isoform X11.9e-1848.8Show/hide
Query:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEA
        DRISLLPD LLH ILS  ++K VVQTC+LSKRWK+LW   PTLN           FN+  EESK  S + F+   L+KH +  I+KL++ SS + D  E+
Subjt:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEA

Query:  LLIADLLLCYARHHTVRQIHLNLFN
        +L+ +LL+CYA  H V+Q+ +N +N
Subjt:  LLIADLLLCYARHHTVRQIHLNLFN

A0A1S3CBU6 F-box/LRR-repeat protein At3g26922-like isoform X27.8e-2030.33Show/hide
Query:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEA
        DRISLLPD LLH ILS  ++K VVQTC+LSKRWK+LW   PTLN           FN+  EESK  S + F+   L+KH +  I+KL++ SS + D  E+
Subjt:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEA

Query:  LLIADLLLCYARHHTVRQIHLNLFNT---------PLKADLL--------------------------CN------------------------------
        +L+ +LL+CYA  H V+Q+ +N +N          P+ + L+                          C+                              
Subjt:  LLIADLLLCYARHHTVRQIHLNLFNT---------PLKADLL--------------------------CN------------------------------

Query:  ----------------------------KEVNMTVDDSHFVGGDDSVLHMLKETIPHLLQVFHYAHSFTLPWKAMEMILSDPSDLRVVFFRNLRYLKLKT
                                    ++V++ + DS F   D S    LK     LL V H A SFTLP KA ++I    S  + + F N+R+L+LKT
Subjt:  ----------------------------KEVNMTVDDSHFVGGDDSVLHMLKETIPHLLQVFHYAHSFTLPWKAMEMILSDPSDLRVVFFRNLRYLKLKT

Query:  NATDRNTNLSVATVMNSLNCPKLQKLEFVLNQE
          +D         + + L  PKL+ +  VLN++
Subjt:  NATDRNTNLSVATVMNSLNCPKLQKLEFVLNQE

A0A5A7TCF1 F-box/LRR-repeat protein1.1e-1848.8Show/hide
Query:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEA
        DRISLLPD LLH ILS  ++K VVQTC+LSKRWK+LW   PTLN           FN+  EESK  S + F+   L+KH +  I+KL++ SS + D  E+
Subjt:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLN-----------FNFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEA

Query:  LLIADLLLCYARHHTVRQIHLNLFN
        +L+ +LL+CYA  H V+Q+ +N +N
Subjt:  LLIADLLLCYARHHTVRQIHLNLFN

A0A6J1CKA9 LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like3.3e-1847.15Show/hide
Query:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQC---EE-------SKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEAL
        DRISLLPD LL  ILS +++K VVQTCVLSKRWK+LW   PTLNFNF+    EE       SK  S + F+   L++     I+KLS+ SS + D    +
Subjt:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQC---EE-------SKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEAL

Query:  LIADLLLCYARHHTVRQIHLNLF
        ++ +LL+C+AR H VR+++L+ +
Subjt:  LIADLLLCYARHHTVRQIHLNLF

SwissProt top hitse value%identityAlignment
Q1PFK0 F-box/LRR-repeat protein At1g556607.8e-0935.83Show/hide
Query:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAEGFVCIFLAKHRSNFIKKLS----FCSSSSMDSHEALLIAD
        MD+IS LPD LL ++LSF+ +K  V T +LS RWKSLW+  P L +NF+    S+      F+   L  H++  I+ LS    + +  S+   +  L   
Subjt:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAEGFVCIFLAKHRSNFIKKLS----FCSSSSMDSHEALLIAD

Query:  LLLCYARHHTVRQIHLNLFN
        L +  +    VR++ L LFN
Subjt:  LLLCYARHHTVRQIHLNLFN

Q9FFW2 FBD-associated F-box protein At5g385908.6e-0840.48Show/hide
Query:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSS
        MD+I+ LPD LL +ILS+V +   V T +LSKRW+ LW+  P L++  + C +  D     F+   L  HR+  I+ L F S+S
Subjt:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSS

Q9FM87 Putative FBD-associated F-box protein At5g564401.1e-0734.82Show/hide
Query:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNF-NFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEALLIADLLLC
        MDRISLLPD ++ +ILSFV +K VV T +LSKRW+ LW   P L++ +    +++ + A  FV  FL  H +  ++ L    S +    +     +  + 
Subjt:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNF-NFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEALLIADLLLC

Query:  YARHHTVRQIHL
         A    VR +H+
Subjt:  YARHHTVRQIHL

Q9LJF8 F-box/LRR-repeat protein At3g269225.4e-1044.74Show/hide
Query:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQCEESKDFSAEGFVCIFLAKHRSNFIKKL
        DRIS LP+ LL +ILS +  K VV T VLSK W+SLW   PTL F+++  +S+D +    VC  L  +++ F++ L
Subjt:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQCEESKDFSAEGFVCIFLAKHRSNFIKKL

Q9LYZ4 F-box/LRR-repeat protein At5g029101.1e-0742.47Show/hide
Query:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQCEESKDFSAEGFVCIFLAKHRSNF
        MD IS LPD +LH ILS V +KS ++T +LSKRW+ +W ETP+L+ +  C  +   S +  +  F A   ++F
Subjt:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQCEESKDFSAEGFVCIFLAKHRSNF

Arabidopsis top hitse value%identityAlignment
AT1G55660.1 FBD, F-box and Leucine Rich Repeat domains containing protein5.5e-1035.83Show/hide
Query:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAEGFVCIFLAKHRSNFIKKLS----FCSSSSMDSHEALLIAD
        MD+IS LPD LL ++LSF+ +K  V T +LS RWKSLW+  P L +NF+    S+      F+   L  H++  I+ LS    + +  S+   +  L   
Subjt:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAEGFVCIFLAKHRSNFIKKLS----FCSSSSMDSHEALLIAD

Query:  LLLCYARHHTVRQIHLNLFN
        L +  +    VR++ L LFN
Subjt:  LLLCYARHHTVRQIHLNLFN

AT1G55660.2 FBD, F-box and Leucine Rich Repeat domains containing protein5.5e-1035.83Show/hide
Query:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAEGFVCIFLAKHRSNFIKKLS----FCSSSSMDSHEALLIAD
        MD+IS LPD LL ++LSF+ +K  V T +LS RWKSLW+  P L +NF+    S+      F+   L  H++  I+ LS    + +  S+   +  L   
Subjt:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAEGFVCIFLAKHRSNFIKKLS----FCSSSSMDSHEALLIAD

Query:  LLLCYARHHTVRQIHLNLFN
        L +  +    VR++ L LFN
Subjt:  LLLCYARHHTVRQIHLNLFN

AT3G26922.1 F-box/RNI-like superfamily protein3.8e-1144.74Show/hide
Query:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQCEESKDFSAEGFVCIFLAKHRSNFIKKL
        DRIS LP+ LL +ILS +  K VV T VLSK W+SLW   PTL F+++  +S+D +    VC  L  +++ F++ L
Subjt:  DRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQCEESKDFSAEGFVCIFLAKHRSNFIKKL

AT5G38590.1 F-box/RNI-like/FBD-like domains-containing protein6.1e-0940.48Show/hide
Query:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSS
        MD+I+ LPD LL +ILS+V +   V T +LSKRW+ LW+  P L++  + C +  D     F+   L  HR+  I+ L F S+S
Subjt:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSS

AT5G38590.2 F-box/RNI-like/FBD-like domains-containing protein6.1e-0940.48Show/hide
Query:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSS
        MD+I+ LPD LL +ILS+V +   V T +LSKRW+ LW+  P L++  + C +  D     F+   L  HR+  I+ L F S+S
Subjt:  MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQ-CEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCGAATCAGCCTCTTACCGGACCTTCTTCTTCATGAAATTCTGTCTTTTGTGGACTCAAAATCAGTTGTCCAGACTTGTGTTCTATCGAAACGGTGGAAAAGCCT
TTGGATTGAAACCCCAACTCTGAATTTCAATTTCCAGTGTGAAGAATCAAAGGATTTTTCGGCGGAGGGCTTCGTCTGCATCTTTTTAGCCAAACATCGCTCTAATTTCA
TAAAAAAGTTGAGTTTCTGTTCCTCTTCTTCAATGGATTCCCACGAAGCCCTTCTCATAGCGGACCTGTTGCTGTGCTATGCACGGCACCACACGGTTCGACAAATTCAC
CTCAACCTCTTCAACACTCCTTTAAAAGCAGATCTTTTGTGCAACAAAGAAGTAAATATGACGGTTGATGACTCTCATTTTGTTGGGGGTGATGACTCAGTCTTACATAT
GTTGAAAGAGACCATTCCTCACCTGCTTCAAGTGTTCCATTACGCCCACTCTTTTACCCTTCCTTGGAAGGCAATGGAGATGATATTGTCGGATCCTTCTGATTTAAGGG
TGGTTTTTTTTCGGAATTTGCGATATTTGAAGTTGAAAACAAACGCAACCGATCGTAACACAAACTTGTCTGTTGCTACCGTGATGAACTCGTTGAACTGCCCAAAATTA
CAGAAGTTGGAGTTTGTCCTCAATCAGGAGTAA
mRNA sequenceShow/hide mRNA sequence
GGTTTGTTGAGTTGCCCTAGCATGGACCGAATCAGCCTCTTACCGGACCTTCTTCTTCATGAAATTCTGTCTTTTGTGGACTCAAAATCAGTTGTCCAGACTTGTGTTCT
ATCGAAACGGTGGAAAAGCCTTTGGATTGAAACCCCAACTCTGAATTTCAATTTCCAGTGTGAAGAATCAAAGGATTTTTCGGCGGAGGGCTTCGTCTGCATCTTTTTAG
CCAAACATCGCTCTAATTTCATAAAAAAGTTGAGTTTCTGTTCCTCTTCTTCAATGGATTCCCACGAAGCCCTTCTCATAGCGGACCTGTTGCTGTGCTATGCACGGCAC
CACACGGTTCGACAAATTCACCTCAACCTCTTCAACACTCCTTTAAAAGCAGATCTTTTGTGCAACAAAGAAGTAAATATGACGGTTGATGACTCTCATTTTGTTGGGGG
TGATGACTCAGTCTTACATATGTTGAAAGAGACCATTCCTCACCTGCTTCAAGTGTTCCATTACGCCCACTCTTTTACCCTTCCTTGGAAGGCAATGGAGATGATATTGT
CGGATCCTTCTGATTTAAGGGTGGTTTTTTTTCGGAATTTGCGATATTTGAAGTTGAAAACAAACGCAACCGATCGTAACACAAACTTGTCTGTTGCTACCGTGATGAAC
TCGTTGAACTGCCCAAAATTACAGAAGTTGGAGTTTGTCCTCAATCAGGAGTAACTACAAAATGGGTTTATGCTGGGTTTTTGGATGCTGAATGGCTCCACGTCTATCAG
TTGTTATCTTTTTAAGCCCTACTTTGAATTTTCCTAATATACTCTTTATTTTTAATTCTAGCATAGGGACTCTTATTTAATTTCCAAGTTTCTCTCTTGTGTTTTCCAAT
ATGTAGATGAAAAGTATCTTAGAGACTGTTTTGATGAAATTTTAGAAGAGTGTTTCGTTAATAACTTGTTTGGATCTAGTTTTTTATAGTGTTTCATATAGTGATAATTA
ATAGCTCGTTTGGAT
Protein sequenceShow/hide protein sequence
MDRISLLPDLLLHEILSFVDSKSVVQTCVLSKRWKSLWIETPTLNFNFQCEESKDFSAEGFVCIFLAKHRSNFIKKLSFCSSSSMDSHEALLIADLLLCYARHHTVRQIH
LNLFNTPLKADLLCNKEVNMTVDDSHFVGGDDSVLHMLKETIPHLLQVFHYAHSFTLPWKAMEMILSDPSDLRVVFFRNLRYLKLKTNATDRNTNLSVATVMNSLNCPKL
QKLEFVLNQE