CuGenDBv2

Gene ID	Sed0027073
Organism	Sechium edule (Chayote v1)
Description	Reverse transcriptase
Genome location	LG04:15934118..15935231
RNA-Seq Expression	Sed0027073
Synteny	Sed0027073
Gene Ontology terms	GO:0090304 - nucleic acid metabolic process (biological process) GO:0005488 - binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	IPR021109 - Aspartic peptidase domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025848.1 pol protein [Cucumis melo var. makuwa]

1.0e-48

51.92

Show/hide

Query:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------
        +L HYAFVLFDSGS+HSF+S  FV+   +++EPLG  L V+TPSG  +L+  ++K+ R++I++ +LD TL+VL M  FDVIL                  
Subjt:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------

Query:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY
        VVF PP + SFKF G  G VC P +IS +KA +LL++  WG LA +       +S+   PVV ++ DVFP+ELPGLPP RE+DF IELEPGT PIS+APY
Subjt:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY

Query:  RMAPAELK
        RMAPAELK
Subjt:  RMAPAELK

KAA0025998.1 pol protein [Cucumis melo var. makuwa]

7.9e-49

52.4

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Query:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------
        +L HYAFVLFDSGS+HSF+S  FVR   +++EPLG  L V+TPSG  +L+  ++K+ R++I++ +LD TL+VL M  FDVIL                  
Subjt:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------

Query:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY
        VVF PP   SFKF G  G VC P +IS +KA +LL++  WG LA +       +S+   PVV ++ DVFP+ELPGLPP RE+DF IELEPGT PIS+APY
Subjt:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY

Query:  RMAPAELK
        RMAPAELK
Subjt:  RMAPAELK

KAA0031437.1 pol protein [Cucumis melo var. makuwa]

1.0e-48

51.92

Show/hide

Query:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------
        +L HYAFVLFDSGS+HSF+S  FV+   +++EPLG  L V+TPSG  +L+  ++K+ R++I++ +LD TL+VL M  FDVIL                  
Subjt:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------

Query:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY
        VVF PP + SFKF G  G VC P +IS +KA +LL++  WG LA +       +S+   PVV ++ DVFP+ELPGLPP RE+DF IELEPGT PIS+APY
Subjt:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY

Query:  RMAPAELK
        RMAPAELK
Subjt:  RMAPAELK

KAA0033825.1 pol protein [Cucumis melo var. makuwa]

1.0e-48

51.92

Show/hide

Query:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------
        +L HYAFVLFDSGS+HSF+S  FV+   +++EPLG  L V+TPSG  +L+  ++K+ R++I++ +LD TL+VL M  FDVIL                  
Subjt:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------

Query:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY
        VVF PP + SFKF G  G VC P +IS +KA +LL++  WG LA +       +S+   PVV ++ DVFP+ELPGLPP RE+DF IELEPGT PIS+APY
Subjt:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY

Query:  RMAPAELK
        RMAPAELK
Subjt:  RMAPAELK

TYK20443.1 pol protein [Cucumis melo var. makuwa]

1.0e-48

51.92

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Query:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------
        +L HYAFVLFDSGS+HSF+S  FV+   +++EPLG  L V+TPSG  +L+  ++K+ R++I++ +LD TL+VL M  FDVIL                  
Subjt:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------

Query:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY
        VVF PP + SFKF G  G VC P +IS +KA +LL++  WG LA +       +S+   PVV ++ DVFP+ELPGLPP RE+DF IELEPGT PIS+APY
Subjt:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY

Query:  RMAPAELK
        RMAPAELK
Subjt:  RMAPAELK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SIJ5 Reverse transcriptase

3.8e-49

52.4

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Query:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------
        +L HYAFVLFDSGS+HSF+S  FVR   +++EPLG  L V+TPSG  +L+  ++K+ R++I++ +LD TL+VL M  FDVIL                  
Subjt:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------

Query:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY
        VVF PP   SFKF G  G VC P +IS +KA +LL++  WG LA +       +S+   PVV ++ DVFP+ELPGLPP RE+DF IELEPGT PIS+APY
Subjt:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY

Query:  RMAPAELK
        RMAPAELK
Subjt:  RMAPAELK

A0A5A7TEQ2 Reverse transcriptase

5.0e-49

51.92

Show/hide

Query:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------
        +L HYAFVLFDSGS+HSF+S  FV+   +++EPLG  L V+TPSG  +L+  ++K+ R++I++ +LD TL+VL M  FDVIL                  
Subjt:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------

Query:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY
        VVF PP + SFKF G  G VC P +IS +KA +LL++  WG LA +       +S+   PVV ++ DVFP+ELPGLPP RE+DF IELEPGT PIS+APY
Subjt:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY

Query:  RMAPAELK
        RMAPAELK
Subjt:  RMAPAELK

A0A5A7TSL0 Reverse transcriptase

5.0e-49

51.92

Show/hide

Query:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------
        +L HYAFVLFDSGS+HSF+S  FV+   +++EPLG  L V+TPSG  +L+  ++K+ R++I++ +LD TL+VL M  FDVIL                  
Subjt:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------

Query:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY
        VVF PP + SFKF G  G VC P +IS +KA +LL++  WG LA +       +S+   PVV ++ DVFP+ELPGLPP RE+DF IELEPGT PIS+APY
Subjt:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY

Query:  RMAPAELK
        RMAPAELK
Subjt:  RMAPAELK

A0A5A7UBS1 Reverse transcriptase

5.0e-49

51.92

Show/hide

Query:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------
        +L HYAFVLFDSGS+HSF+S  FV+   +++EPLG  L V+TPSG  +L+  ++K+ R++I++ +LD TL+VL M  FDVIL                  
Subjt:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------

Query:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY
        VVF PP + SFKF G  G VC P +IS +KA +LL++  WG LA +       +S+   PVV ++ DVFP+ELPGLPP RE+DF IELEPGT PIS+APY
Subjt:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY

Query:  RMAPAELK
        RMAPAELK
Subjt:  RMAPAELK

A0A5D3CQB5 Reverse transcriptase

5.0e-49

51.92

Show/hide

Query:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------
        +L HYAFVLFDSGS+HSF+S  FV+   +++EPLG  L V+TPSG  +L+  ++K+ R++I++ +LD TL+VL M  FDVIL                  
Subjt:  VLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVIL------------------

Query:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY
        VVF PP + SFKF G  G VC P +IS +KA +LL++  WG LA +       +S+   PVV ++ DVFP+ELPGLPP RE+DF IELEPGT PIS+APY
Subjt:  VVFRPPQKPSFKFHGVKGGVC-PPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPY

Query:  RMAPAELK
        RMAPAELK
Subjt:  RMAPAELK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCCAAGCCCTCGCTCCTGAGAGTTATGACCGAGCAGTGGAGTTGGCCACAATCTATAATCCGAAGTATCCGTCAGGTCACGAGGAATCATTTGCAACAACTCGGTCG
ATTCGACTTGCTCAAGAAAGATTCAGGTATAAGAGGAAGTTTGGGTCTTCTAATGGTTCCCGCTCAGGTGGACAACAAACTCGCCGTCAGGGCCAGTCTAGAGGTCAGGA
TCAGCGCCGACCACAAGGTAGAGCTTAGGATCGCCAGCAGGGCGGGGCCAGGCAGCCGACTCATTGCAACAAGATTTAGCAGTAGTGGGACCGGCCCAGCAGCAGGGCAG
GGTGTTCGCCACTACTCGCCAGGAGGCAGAGCGTCATCGATGATGCATTCTTGCAGTGTCACGCTTGTCTTAGAGCATTATGCATTTGTGTTGTTCGATTCGGGTTCGAC
CCATTCTTTTGTTTCTGATGCATTTGTTAGACAGGCTTGTGTGAAACTCGAACCTCTAGGGTTTGAGCTGTGTGTTGCCACTCCCTCGGGAGTGAGTATGTTAGCTAGTA
GTAGAGTTAAAAGTGGCCGGATACAGATATCCGATGAGATTCTAGATGCTACCCTCATAGTTCTGTCTATGAGCGGTTTCGATGTGATCCTTGTTGTGTTTAGGCCGCCT
CAGAAGCCGAGCTTCAAGTTTCACGGTGTCAAGGGCGGGGTTTGCCCACCATTGATCTCAGTAGTGAAAGCCTGTAGATTGTTAACTCGAAGAGCTTGGGGCTTCTTGGC
AAAGCTGTCAGGAGATAGTAATACCGCGTTGTCTGTTGACATGGTCCCTGTAGTGCTAAAGTTTGCTGATGTTTTCCCTGAGGAATTACCGGGTTTACCTCCGAAGAGGG
AGTTAGACTTCACCATCGAGCTGGAGCCAGGGACTCTTCCCATTTCTAAAGCCCCGTATCGTATGGCGCCAGCTGAGTTGAAATAA

mRNA sequence

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Protein sequence

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MSKPSLLRVMTEQWSWPQSIIRSIRQVTRNHLQQLGRFDLLKKDSGIRGSLGLLMVPAQVDNKLAVRASLEVRISADHKVELRIASRAGPGSRLIATRFSSSGTGPAAGQ
GVRHYSPGGRASSMMHSCSVTLVLEHYAFVLFDSGSTHSFVSDAFVRQACVKLEPLGFELCVATPSGVSMLASSRVKSGRIQISDEILDATLIVLSMSGFDVILVVFRPP
QKPSFKFHGVKGGVCPPLISVVKACRLLTRRAWGFLAKLSGDSNTALSVDMVPVVLKFADVFPEELPGLPPKRELDFTIELEPGTLPISKAPYRMAPAELK

Sed0027073 (gene) of Chayote v1 genome