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Sed0027085 (gene) of Chayote v1 genome

Gene IDSed0027085
OrganismSechium edule (Chayote v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationLG09:40020940..40021360
RNA-Seq ExpressionSed0027085
SyntenySed0027085
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044675 - E3 ubiquitin-protein ligase RING1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF41012.1 conserved hypothetical protein [Ricinus communis]4.8e-1342.72Show/hide
Query:  MLGW--SNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLV
        MLGW  S+        + P  +      N+   S   + YKK  E  E  +ETE ++CLS FED E +RQLP C H FHASCID+W+ S  DC LCR+ +
Subjt:  MLGW--SNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLV

Query:  DRV
         R+
Subjt:  DRV

KAA0059407.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa]4.4e-3559.44Show/hide
Query:  MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDR
        MLGW NCCCRSP  T+ VKN K+EDSN+I+ISTIM  YKKEN++EETN  +E  LCLSP EDGECIR+L  CNHVFHASCIDVWL S  +C LCR+ +D 
Subjt:  MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDR

Query:  VA---------------LVVNNNLRIALSACVSRREVEPENMV
        VA               +V+NN+L+I LS   SRR    ENMV
Subjt:  VA---------------LVVNNNLRIALSACVSRREVEPENMV

KAE8646506.1 hypothetical protein Csa_015876 [Cucumis sativus]1.3e-3457.55Show/hide
Query:  MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDR
        +LGW NCCCRSP  T  VKN K+EDSN+++ISTIM  YKKEN++EETN  +E  LCLSP+EDGECIR+L  CNHVFHASCID+WL S  +C LCR+ + R
Subjt:  MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDR

Query:  VALV-----------VNNNLRIALSACVSRREVEPENMV
        VA +           ++N+L+I  S   S+RE  PENMV
Subjt:  VALV-----------VNNNLRIALSACVSRREVEPENMV

KAG7013994.1 E3 ubiquitin-protein ligase ATL6, partial [Cucurbita argyrosperma subsp. argyrosperma]7.3e-3863.04Show/hide
Query:  MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDR
        +LGW NCCC SP TTE V+N K+E S+++QI T+  TYKKENE EETNTE+E VLCLSPFEDGECIRQLP CNHVFHASCIDVWLSS  +C LCR+ V  
Subjt:  MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDR

Query:  VA----------LVVNNNLRIALSACVSRREVEPENMV
        VA          +V  N+L+I LS  V R +  PENMV
Subjt:  VA----------LVVNNNLRIALSACVSRREVEPENMV

KDP40714.1 hypothetical protein JCGZ_24713 [Jatropha curcas]2.1e-1346.67Show/hide
Query:  PGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRV
        PG T P +       N+   S   + YKKE+E  E   ETE V+CLS FED E +R+L  C H FHA CID+WL S  DC LCR+ + R+
Subjt:  PGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRV

TrEMBL top hitse value%identityAlignment
A0A067L9H5 RING-type E3 ubiquitin transferase1.0e-1346.67Show/hide
Query:  PGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRV
        PG T P +       N+   S   + YKKE+E  E   ETE V+CLS FED E +R+L  C H FHA CID+WL S  DC LCR+ + R+
Subjt:  PGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRV

A0A0A0KAX6 RING-type E3 ubiquitin transferase6.2e-3557.55Show/hide
Query:  MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDR
        +LGW NCCCRSP  T  VKN K+EDSN+++ISTIM  YKKEN++EETN  +E  LCLSP+EDGECIR+L  CNHVFHASCID+WL S  +C LCR+ + R
Subjt:  MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDR

Query:  VALV-----------VNNNLRIALSACVSRREVEPENMV
        VA +           ++N+L+I  S   S+RE  PENMV
Subjt:  VALV-----------VNNNLRIALSACVSRREVEPENMV

A0A2N9J1M7 RING-type E3 ubiquitin transferase4.2e-1547.25Show/hide
Query:  PGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVA
        P T  PVK    + S +  +S   + YKK  E  E  +ETE V+CLS FED EC+ +LP C H FH  CID+WL S  DC LCR+ +DR++
Subjt:  PGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVA

A0A5D3BXP3 RING-type E3 ubiquitin transferase2.1e-3559.44Show/hide
Query:  MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDR
        MLGW NCCCRSP  T+ VKN K+EDSN+I+ISTIM  YKKEN++EETN  +E  LCLSP EDGECIR+L  CNHVFHASCIDVWL S  +C LCR+ +D 
Subjt:  MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDR

Query:  VA---------------LVVNNNLRIALSACVSRREVEPENMV
        VA               +V+NN+L+I LS   SRR    ENMV
Subjt:  VA---------------LVVNNNLRIALSACVSRREVEPENMV

B9S5S5 RING-type E3 ubiquitin transferase2.3e-1342.72Show/hide
Query:  MLGW--SNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLV
        MLGW  S+        + P  +      N+   S   + YKK  E  E  +ETE ++CLS FED E +RQLP C H FHASCID+W+ S  DC LCR+ +
Subjt:  MLGW--SNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLV

Query:  DRV
         R+
Subjt:  DRV

SwissProt top hitse value%identityAlignment
Q8L9T5 RING-H2 finger protein ATL21.5e-0943.59Show/hide
Query:  DSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVA
        D NVI+ S  ++T+  E   +      E  +CLS FE+ E  R LP C H FH  CID+W  S   C LCRSLV+ +A
Subjt:  DSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVA

Q9C7I1 RING-H2 finger protein ATL341.5e-0957.78Show/hide
Query:  ERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRS
        E  +CL+ FED E +R +P C+H FHASCIDVWLSS   C +CR+
Subjt:  ERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRS

Q9LSW9 RING-H2 finger protein ATL161.5e-0948.28Show/hide
Query:  ENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLV
        E E EE     E  +CLS F+D E +R +P C+H+FH  CIDVWL +  +C LCR+ V
Subjt:  ENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLV

Q9LUZ9 RING-H2 finger protein ATL637.9e-1142.86Show/hide
Query:  SPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVALVVNNNLR
        SP  T   ++ K  DS+V  IS+I     +ENE EE + E E V+CL  +E G+  R+L  C H FH  CID+WLSS   C LCRS V   A+    NL+
Subjt:  SPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVALVVNNNLR

Query:  IALSACVSRREV
        +A++A     EV
Subjt:  IALSACVSRREV

Q9SJJ7 RING-H2 finger protein ATL578.7e-1044.44Show/hide
Query:  DSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRS
        DS  ++ S  +Y Y K    ++ N +   V+CLS FE+GE ++ +P C HVFH  C+D WLSS + C LCRS
Subjt:  DSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRS

Arabidopsis top hitse value%identityAlignment
AT1G35330.1 RING/U-box superfamily protein1.1e-1057.78Show/hide
Query:  ERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRS
        E  +CL+ FED E +R +P C+H FHASCIDVWLSS   C +CR+
Subjt:  ERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRS

AT2G27940.1 RING/U-box superfamily protein6.2e-1144.44Show/hide
Query:  DSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRS
        DS  ++ S  +Y Y K    ++ N +   V+CLS FE+GE ++ +P C HVFH  C+D WLSS + C LCRS
Subjt:  DSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRS

AT3G16720.1 TOXICOS EN LEVADURA 21.1e-1043.59Show/hide
Query:  DSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVA
        D NVI+ S  ++T+  E   +      E  +CLS FE+ E  R LP C H FH  CID+W  S   C LCRSLV+ +A
Subjt:  DSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVA

AT5G43420.1 RING/U-box superfamily protein1.1e-1048.28Show/hide
Query:  ENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLV
        E E EE     E  +CLS F+D E +R +P C+H+FH  CIDVWL +  +C LCR+ V
Subjt:  ENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLV

AT5G58580.1 TOXICOS EN LEVADURA 635.6e-1242.86Show/hide
Query:  SPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVALVVNNNLR
        SP  T   ++ K  DS+V  IS+I     +ENE EE + E E V+CL  +E G+  R+L  C H FH  CID+WLSS   C LCRS V   A+    NL+
Subjt:  SPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVALVVNNNLR

Query:  IALSACVSRREV
        +A++A     EV
Subjt:  IALSACVSRREV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGGATGGAGTAATTGCTGTTGTCGTTCGCCCGGGACGACCGAGCCTGTAAAGAACTTTAAACATGAAGACTCAAATGTCATACAGATCTCAACTATCATGTACAC
GTACAAGAAAGAAAATGAGACTGAAGAAACTAATACTGAAACTGAGCGTGTTTTGTGCTTGTCACCTTTTGAGGATGGGGAATGTATACGGCAGCTTCCCGGTTGCAACC
ATGTCTTTCATGCATCGTGTATCGACGTATGGCTGTCTTCACCGTTAGATTGCCTGCTCTGTCGGAGTCTAGTCGATCGTGTAGCTTTAGTTGTTAATAACAATCTCCGG
ATTGCGCTTTCTGCTTGTGTAAGTAGAAGAGAGGTGGAGCCAGAAAACATGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAGGATGGAGTAATTGCTGTTGTCGTTCGCCCGGGACGACCGAGCCTGTAAAGAACTTTAAACATGAAGACTCAAATGTCATACAGATCTCAACTATCATGTACAC
GTACAAGAAAGAAAATGAGACTGAAGAAACTAATACTGAAACTGAGCGTGTTTTGTGCTTGTCACCTTTTGAGGATGGGGAATGTATACGGCAGCTTCCCGGTTGCAACC
ATGTCTTTCATGCATCGTGTATCGACGTATGGCTGTCTTCACCGTTAGATTGCCTGCTCTGTCGGAGTCTAGTCGATCGTGTAGCTTTAGTTGTTAATAACAATCTCCGG
ATTGCGCTTTCTGCTTGTGTAAGTAGAAGAGAGGTGGAGCCAGAAAACATGGTTTGA
Protein sequenceShow/hide protein sequence
MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVALVVNNNLR
IALSACVSRREVEPENMV