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Sed0027087 (gene) of Chayote v1 genome

Gene IDSed0027087
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan protein 15
Genome locationLG08:32414063..32414809
RNA-Seq ExpressionSed0027087
SyntenySed0027087
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585732.1 CXXC motif containing zinc binding protein, partial [Cucurbita argyrosperma subsp. sororia]1.2e-0680Show/hide
Query:  SLIALIALAIAVASVAAQEAPAPSPASPASSVAPSLVSASLAAIVALAFGSALRI
        SL+ALIAL IAVASVAAQEAPAPSPASPASS+APS VSA  A  VAL  GS LRI
Subjt:  SLIALIALAIAVASVAAQEAPAPSPASPASSVAPSLVSASLAAIVALAFGSALRI
KAG6598305.1 hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia]1.3e-0875.81Show/hide
Query:  MAAVSKVSLIALIALAIAVASVAAQEAPAPSPASPASSVAPSLVSASLAAIVALAFGSALRI
        MA VS+ SL+ALIA+  AVASVAA EAPAPSPASPA+S+APS VSA +AA VALAFGS LRI
Subjt:  MAAVSKVSLIALIALAIAVASVAAQEAPAPSPASPASSVAPSLVSASLAAIVALAFGSALRI
KGN62403.1 hypothetical protein Csa_018595 [Cucumis sativus]1.5e-0979.03Show/hide
Query:  MAAVSKVSLIALIALAIAVASVAAQEAPAPSPASPASSVAPSLVSASLAAIVALAFGSALRI
        MAA+SKVSL+ALIAL  A++SVAAQEAPAPSPASPA+S+APS VSA LAA +ALAFGS LRI
Subjt:  MAAVSKVSLIALIALAIAVASVAAQEAPAPSPASPASSVAPSLVSASLAAIVALAFGSALRI
TrEMBL top hitse value%identityAlignment
A0A0A0LKU1 Uncharacterized protein7.5e-1079.03Show/hide
Query:  MAAVSKVSLIALIALAIAVASVAAQEAPAPSPASPASSVAPSLVSASLAAIVALAFGSALRI
        MAA+SKVSL+ALIAL  A++SVAAQEAPAPSPASPA+S+APS VSA LAA +ALAFGS LRI
Subjt:  MAAVSKVSLIALIALAIAVASVAAQEAPAPSPASPASSVAPSLVSASLAAIVALAFGSALRI
SwissProt top hitse value%identityAlignment
Q9LYF6 Arabinogalactan protein 159.1e-0553.33Show/hide
Query:  AVSKVSLIALIALAIAVASVAAQEAPAPSPASPASSVAPSLVSASLAAIVALAFGSALRI
        A+SK S++ L+ + I+V + A  EAPAPSP S +S+++ S VSA +AA+ AL FGSALRI
Subjt:  AVSKVSLIALIALAIAVASVAAQEAPAPSPASPASSVAPSLVSASLAAIVALAFGSALRI
Arabidopsis top hitse value%identityAlignment
AT5G11740.1 arabinogalactan protein 156.5e-0653.33Show/hide
Query:  AVSKVSLIALIALAIAVASVAAQEAPAPSPASPASSVAPSLVSASLAAIVALAFGSALRI
        A+SK S++ L+ + I+V + A  EAPAPSP S +S+++ S VSA +AA+ AL FGSALRI
Subjt:  AVSKVSLIALIALAIAVASVAAQEAPAPSPASPASSVAPSLVSASLAAIVALAFGSALRI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTTTCCAAAGTTTCTCTCATCGCACTCATTGCTCTCGCCATCGCCGTCGCTTCGGTCGCCGCTCAGGAGGCTCCGGCACCCAGCCCTGCCTCCCCTGCCTC
CTCCGTTGCTCCGTCGCTCGTCTCCGCTTCCCTCGCCGCCATCGTCGCTCTCGCCTTCGGATCTGCTCTCAGGATCTGA
mRNA sequenceShow/hide mRNA sequence
TTTCCAAACCAAACGAGTCTTCTCTCAGTTTCTCACCTTTCAAACCCCTCTCTCGCCGGAACCCTAACAAACCCGTACCGGAATCAATGGCCGCCGTTTCCAAAGTTTCT
CTCATCGCACTCATTGCTCTCGCCATCGCCGTCGCTTCGGTCGCCGCTCAGGAGGCTCCGGCACCCAGCCCTGCCTCCCCTGCCTCCTCCGTTGCTCCGTCGCTCGTCTC
CGCTTCCCTCGCCGCCATCGTCGCTCTCGCCTTCGGATCTGCTCTCAGGATCTGAGGTACCGTCGCCGGTGACTTATTTTGCCATGATTCGATGAATTTCTGCTCTGTTT
TTCTTCTGGAAGTAGCCTTGGGGGATTTGTTTAACGTCTTTTCATTGGATTTTAATTCCTGTAGATTTGGTACAGAGGACCTCTTGTTTACACATTCTTATATATAGAGA
ATGCAGGTTGTGATTGTTTGATGATGATTTGTGCTAGTATTTGTTGTTATGATTGATTAGTAAATAAATTGTTTCGTTCTTTTAAACTTCTTCTTCTTGATTCTCCTCTT
CGTCTATATCGCCGGCGGCTTTGCTATGAGAACTCGTCGATTATCCATTCCTAATTGTTCATACTTAATTTCCACGAGAAGATTTCATCCATGGAATTCCTAATTATGTG
TTCTCCAATTGGAAATAGGTATAAGAAAAACATTCAGTATTGAAGTTCCGATTATTCAATTCTGTAGTTCAAAGATTTGGAAGGCGT
Protein sequenceShow/hide protein sequence
MAAVSKVSLIALIALAIAVASVAAQEAPAPSPASPASSVAPSLVSASLAAIVALAFGSALRI