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Sed0027170 (gene) of Chayote v1 genome

Gene IDSed0027170
OrganismSechium edule (Chayote v1)
DescriptionMediator of RNA polymerase II transcription subunit 11
Genome locationLG11:27574245..27579338
RNA-Seq ExpressionSed0027170
SyntenySed0027170
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144648.1 mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus]4.7e-5592.44Show/hide
Query:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SK
Subjt:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDCHQVKIEDA
        LDGMKQTIDD +QVKIED+
Subjt:  LDGMKQTIDDCHQVKIEDA
XP_008442051.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]2.1e-5593.28Show/hide
Query:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDCHQVKIEDA
        LDGMKQTIDD +QVK+ED+
Subjt:  LDGMKQTIDDCHQVKIEDA
XP_022142440.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia]1.9e-5694.12Show/hide
Query:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP+TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDCHQVKIEDA
        LDGMKQTID+ +QVK+EDA
Subjt:  LDGMKQTIDDCHQVKIEDA
XP_022927640.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata]7.2e-5693.28Show/hide
Query:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP+TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDCHQVKIEDA
        LDGMKQTID+ +QVK+ED+
Subjt:  LDGMKQTIDDCHQVKIEDA
XP_023520392.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo]3.2e-5694.12Show/hide
Query:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP+TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDCHQVKIEDA
        LDGMKQTID+ +QVK+EDA
Subjt:  LDGMKQTIDDCHQVKIEDA
TrEMBL top hitse value%identityAlignment
A0A0A0L450 Mediator of RNA polymerase II transcription subunit 111.5e-5178.01Show/hide
Query:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIK----------------------DIQVTLRDEIKSACEYRPFEK
        MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIK                      DIQVTLRDEIKSACEYRPFEK
Subjt:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIK----------------------DIQVTLRDEIKSACEYRPFEK

Query:  CDYSSRITNELCCKKLEYMISKLDGMKQTIDDCHQVKIEDA
        CDYSSRITNELCCKKLEYM+SKLDGMKQTIDD +QVKIED+
Subjt:  CDYSSRITNELCCKKLEYMISKLDGMKQTIDDCHQVKIEDA
A0A1S3B5G7 Mediator of RNA polymerase II transcription subunit 111.0e-5593.28Show/hide
Query:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDCHQVKIEDA
        LDGMKQTIDD +QVK+ED+
Subjt:  LDGMKQTIDDCHQVKIEDA
A0A6J1CKY4 Mediator of RNA polymerase II transcription subunit 119.2e-5794.12Show/hide
Query:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP+TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDCHQVKIEDA
        LDGMKQTID+ +QVK+EDA
Subjt:  LDGMKQTIDDCHQVKIEDA
A0A6J1EPJ1 Mediator of RNA polymerase II transcription subunit 113.5e-5693.28Show/hide
Query:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP+TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDCHQVKIEDA
        LDGMKQTID+ +QVK+ED+
Subjt:  LDGMKQTIDDCHQVKIEDA
A0A6J1I6T5 Mediator of RNA polymerase II transcription subunit 113.9e-5592.44Show/hide
Query:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP+TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYMI K
Subjt:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDCHQVKIEDA
        LDGMKQTID+ +QVK+EDA
Subjt:  LDGMKQTIDDCHQVKIEDA
SwissProt top hitse value%identityAlignment
Q6ID77 Mediator of RNA polymerase II transcription subunit 111.0e-4476.15Show/hide
Query:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GPKKE VN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++
Subjt:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTID
        L+ +KQT D
Subjt:  LDGMKQTID
Arabidopsis top hitse value%identityAlignment
AT3G01435.1 Expressed protein7.2e-4676.15Show/hide
Query:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GPKKE VN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++
Subjt:  MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTID
        L+ +KQT D
Subjt:  LDGMKQTID

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCGGTGACCCAGAATACTTCGTTGCAACGCCTTCAGAATGTGGAAAAGCGAATTGTGAGGGTTCTGGAGTTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCC
TGCTGGTCCAAAAAAGGAAATTGTGAACAATCATTGCAGTGAGTTCATGCAATTCATTAAGGATATCCAAGTTACTTTGCGGGATGAAATCAAAAGTGCATGCGAGTATC
GTCCATTTGAGAAATGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAACAAACCATCGATGAC
TGTCATCAAGTGAAAATCGAAGATGCTTGA
mRNA sequenceShow/hide mRNA sequence
GAAATTTGACACAACAAGAGAGCAACGACAACCCAAAGGAGTCAAATAAAAAAAATGAAGAGACATTTTTTTATTATTAAATGACAGTATTGTCCTTCCCTTGTATACTC
AATTTAATCTAGAAGGGAGGCAATTTGTGAAATTAAAATAAAATTAAAAAAAAAAAAGTTTTTGCAATTTTACTTAAAATATATTAGATTTTTTGACGCAGGCACATAAG
TGGACTCCACCGGCGCTGCCGCTCACCAGTTCCTTCAACTCTTGTTCGTCGGCCGAGATCAATTCGTATCAAATCCTCCATTGCTGTGAGATCTATCACAGCCTGCACTG
CTCTTCATGGATCCGGTGACCCAGAATACTTCGTTGCAACGCCTTCAGAATGTGGAAAAGCGAATTGTGAGGGTTCTGGAGTTAGCAGGAGGAGTCATGGAAGAGCTTGC
CAACCCTGCTGGTCCAAAAAAGGAAATTGTGAACAATCATTGCAGTGAGTTCATGCAATTCATTAAGGATATCCAAGTTACTTTGCGGGATGAAATCAAAAGTGCATGCG
AGTATCGTCCATTTGAGAAATGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAACAAACCATC
GATGACTGTCATCAAGTGAAAATCGAAGATGCTTGAGGCATATGTCCTAGTTGTGTCTTATTGGCTGCATTCATTTTCCCTTTCTTCACATTGGAATTGGAAGCCAGATT
CACCTGCTCAACAAAGGGAAGTATTCATTACTGAATTTTGATCTTCTTCAATGGATGATTATAATATAACAACCTGTTGTCTTTCTAGTTAACTTGAAACTAAGTCTGTT
TTTATGGTTAGCTTGGAACTGAGTCTTAGTTAACAATTGGTTCCCTCCACCTTGGCTCCTAGGCTTTATACTATTCCTTGTTTAGAATATACTTCTTTTGTCGATTCTTA
TCGAAAAAAAAGTTATTCTCTTCCTTTTTTTGTTTCTTATATAAAAAAATCGTTATATGGTGGTGGAATTAGTTTTTCATTGAAGTAGAAATGTCTGAAGAGGGGTAGTA
GAGCAAGGCTCCAAGTTTGGGAGTGAGAATTCTAATCTTTTTCATTTGCTTAGACTGCTTTGCCTTTATCTCTTTTAGTTTTTTCTTCAGCCAAAAGGAGTTGATTCTTT
CAAGGTTGTGATCCCATAGAAGATACTTTTGAGAAATGTTTTGTTATCGTTGAAAAAAACATAAATCAAAAGAAGAGTCATAGTTGTCTTTAAGTTTAAGAACAATGTTT
TCCCATTTTCTCTATGTATTTTCATGCATCTTTTTATTATTATTATTGTTTCTTTTTTCCAGAAAGTATATATAAGAACATTCTATACCATGC
Protein sequenceShow/hide protein sequence
MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDD
CHQVKIEDA