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Sed0027206 (gene) of Chayote v1 genome

Gene IDSed0027206
OrganismSechium edule (Chayote v1)
DescriptionSerine/arginine repetitive matrix protein 1-like
Genome locationLG05:22040382..22041492
RNA-Seq ExpressionSed0027206
SyntenySed0027206
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR007592 - GLABROUS1 enhancer-binding protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037301.1 serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa]1.0e-4753.69Show/hide
Query:  HFSEEEEVKLLNCYLEMGRSNK--KN--PTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIGRTIWGKSPTPTPTPT
        HF++E+E+ LL  YL++ RS    KN  PT+DSP  +R+  A+G  FSHS IAD LHRLKL YHKFARTKSF+KTPH R+ILD+GR+IWGKSPTP     
Subjt:  HFSEEEEVKLLNCYLEMGRSNK--KN--PTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIGRTIWGKSPTPTPTPT

Query:  STTTSPPHPTP-RISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWALLHSQEAELKATRAALL
          T  P   +P RI SRRI Q+   ++             +DL +FP+LV+EFS+ FPGNGVW++GL+ ME+  L+ MN++W LLH + AELKA RAALL
Subjt:  STTTSPPHPTP-RISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWALLHSQEAELKATRAALL

Query:  RRQ
        ++Q
Subjt:  RRQ

KAG6570827.1 hypothetical protein SDJN03_29742, partial [Cucurbita argyrosperma subsp. sororia]7.5e-5455Show/hide
Query:  MSTPPA-KPTCSDGGRLTHFSEEEEVKLLNCYLEMGRS----NKKNPTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRIL
        MSTP    P+ +    LTHFSEE+E+ LLNCYL++ RS    +   PT+DSP L+RI  A+   F++SHIAD LHRLKL+YHK ARTKS +KTPHHRRIL
Subjt:  MSTPPA-KPTCSDGGRLTHFSEEEEVKLLNCYLEMGRS----NKKNPTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRIL

Query:  DIGRTIWGKSPTPTPTPTSTTTSPPHPTPRISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWA
        +IGR+IWGK PT    P +   + P        RRI Q+           + ++K GVDLNDFP+L+SEFSR FPGNGVWK+GL+ ME+  LR MN++W 
Subjt:  DIGRTIWGKSPTPTPTPTSTTTSPPHPTPRISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWA

Query:  LLHSQEAELKATRAALLRRQ
        LLH +EAELKA RAALL++Q
Subjt:  LLHSQEAELKATRAALLRRQ

KAG6606028.1 hypothetical protein SDJN03_03345, partial [Cucurbita argyrosperma subsp. sororia]2.7e-5156.06Show/hide
Query:  HFSEEEEVKLLNCYLEMGRSNKKNPTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIGRTIWGKSPTPTPTPTSTTT
        HF++E+E+ LLNCYLE+  S    PT+DSP L+RI  A+G  F HSHIAD LHRLK++YHKFARTKSF+KTPHH RIL+IGR+IWGK             
Subjt:  HFSEEEEVKLLNCYLEMGRSNKKNPTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIGRTIWGKSPTPTPTPTSTTT

Query:  SPPHPTPRISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWALLHSQEAELKATRAALLRRQ
          P   P++ SRRI      + RS A      K GVDL +FP+LVSEFSR FPGNGVW++GL+ ME+  L+ MN++W LLH +EAELKA R AL++RQ
Subjt:  SPPHPTPRISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWALLHSQEAELKATRAALLRRQ

KGN46890.1 hypothetical protein Csa_020607 [Cucumis sativus]1.4e-4752.8Show/hide
Query:  HFSEEEEVKLLNCYLEMGRSNK--KN--PTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIGRTIWGKSPTPTPTPT
        HF++E+E+ LLN YL++ RS    KN  PT+DS   +R+  A+G  FSHS IAD LHRLKL YHKFARTKSF+KTPH R+ILD+GR+IWGKSPTP     
Subjt:  HFSEEEEVKLLNCYLEMGRSNK--KN--PTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIGRTIWGKSPTPTPTPT

Query:  STTTSPPHPTP-RISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWALLHSQEAELKATRAALL
          T  P   +P R+ SRRI Q+   ++             VDL +FP+LV+EFSR FPGNGVW+ GL+ M +  L+ MN++W LLH + AELKA RAALL
Subjt:  STTTSPPHPTP-RISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWALLHSQEAELKATRAALL

Query:  RRQ----HTSEDLN
        + Q     T+ED+N
Subjt:  RRQ----HTSEDLN

XP_022756636.1 probable transcription factor At1g61730 [Durio zibethinus]1.9e-2536.99Show/hide
Query:  MSTPPAKPTCSDGGRLTH-FSEEEEVKLLNCYLEMGRS-NKKNPTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIG
        MSTP   P+ +  GR +  FSE +E ++L C +   +S +    TV +PT+ RI   +   FS S I D + RL+++YHK ARTKS V+T H RRI  + 
Subjt:  MSTPPAKPTCSDGGRLTH-FSEEEEVKLLNCYLEMGRS-NKKNPTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIG

Query:  RTIWGKSPTPTPTPTSTTTSPPHPTPRISSRRITQQQQQQQRSAATSTTTNKG-GV-DLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWAL
        + IWGK  TP                               + A     + KG GV DL+ FP LV+EFSR  P N VWK+ ++ +E+ +L+ M+QEW L
Subjt:  RTIWGKSPTPTPTPTSTTTSPPHPTPRISSRRITQQQQQQQRSAATSTTTNKG-GV-DLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWAL

Query:  LHSQEAELKATRAALLRRQ
        +  +EA+L A +A L+++Q
Subjt:  LHSQEAELKATRAALLRRQ

TrEMBL top hitse value%identityAlignment
A0A0A0KAX7 Uncharacterized protein6.6e-4852.8Show/hide
Query:  HFSEEEEVKLLNCYLEMGRSNK--KN--PTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIGRTIWGKSPTPTPTPT
        HF++E+E+ LLN YL++ RS    KN  PT+DS   +R+  A+G  FSHS IAD LHRLKL YHKFARTKSF+KTPH R+ILD+GR+IWGKSPTP     
Subjt:  HFSEEEEVKLLNCYLEMGRSNK--KN--PTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIGRTIWGKSPTPTPTPT

Query:  STTTSPPHPTP-RISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWALLHSQEAELKATRAALL
          T  P   +P R+ SRRI Q+   ++             VDL +FP+LV+EFSR FPGNGVW+ GL+ M +  L+ MN++W LLH + AELKA RAALL
Subjt:  STTTSPPHPTP-RISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWALLHSQEAELKATRAALL

Query:  RRQ----HTSEDLN
        + Q     T+ED+N
Subjt:  RRQ----HTSEDLN

A0A5A7T6T1 Serine/arginine repetitive matrix protein 1-like5.1e-4853.69Show/hide
Query:  HFSEEEEVKLLNCYLEMGRSNK--KN--PTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIGRTIWGKSPTPTPTPT
        HF++E+E+ LL  YL++ RS    KN  PT+DSP  +R+  A+G  FSHS IAD LHRLKL YHKFARTKSF+KTPH R+ILD+GR+IWGKSPTP     
Subjt:  HFSEEEEVKLLNCYLEMGRSNK--KN--PTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIGRTIWGKSPTPTPTPT

Query:  STTTSPPHPTP-RISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWALLHSQEAELKATRAALL
          T  P   +P RI SRRI Q+   ++             +DL +FP+LV+EFS+ FPGNGVW++GL+ ME+  L+ MN++W LLH + AELKA RAALL
Subjt:  STTTSPPHPTP-RISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWALLHSQEAELKATRAALL

Query:  RRQ
        ++Q
Subjt:  RRQ

A0A6A2Z6N0 Uncharacterized protein4.6e-2535.48Show/hide
Query:  MSTPPAKPTCSDGGRLTH-FSEEEEVKLLNCYLEMGRS-NKKNPTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIG
        MSTPP   T +  GR +  FSE +E+++L C +   +S +    TV +PT+ RI   +   FS S I D L RL+ +YHK AR KS V+T H RRI  + 
Subjt:  MSTPPAKPTCSDGGRLTH-FSEEEEVKLLNCYLEMGRS-NKKNPTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIG

Query:  RTIWGKSPTPTPTPTSTTTSPPHPTPRISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWALLH
        + IWGK   P                             +++     +    G  +L +F  LV+EFSR  PGN VWK+ +  M +++LR M+QEW  L 
Subjt:  RTIWGKSPTPTPTPTSTTTSPPHPTPRISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWALLH

Query:  SQEAELKATRAALLRRQ
         +EA+L A +A L+++Q
Subjt:  SQEAELKATRAALLRRQ

A0A6P3Z773 probable transcription factor At1g617304.6e-2536.79Show/hide
Query:  FSEEEEVKLLNCYLEMGRSNKKNPTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIGRTIWGKSPTPTPTPTSTTTS
        F+EE+E  LL  +  + +S+  +  ++SP L+RI  ++G  FSH+ I D L RL+L+YHK ARTKS +KT H R +  I R IWG+  +           
Subjt:  FSEEEEVKLLNCYLEMGRSNKKNPTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIGRTIWGKSPTPTPTPTSTTTS

Query:  PPHPTPRISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWALLHSQEAELKATRAAL
              R       ++++++QR          G V L +FP+L  E      GN VWKKGL  +E+  L+ +N++W LL  +EAE+ ATRA L
Subjt:  PPHPTPRISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWALLHSQEAELKATRAAL

A0A6P5ZW34 probable transcription factor At1g617309.3e-2636.99Show/hide
Query:  MSTPPAKPTCSDGGRLTH-FSEEEEVKLLNCYLEMGRS-NKKNPTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIG
        MSTP   P+ +  GR +  FSE +E ++L C +   +S +    TV +PT+ RI   +   FS S I D + RL+++YHK ARTKS V+T H RRI  + 
Subjt:  MSTPPAKPTCSDGGRLTH-FSEEEEVKLLNCYLEMGRS-NKKNPTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIG

Query:  RTIWGKSPTPTPTPTSTTTSPPHPTPRISSRRITQQQQQQQRSAATSTTTNKG-GV-DLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWAL
        + IWGK  TP                               + A     + KG GV DL+ FP LV+EFSR  P N VWK+ ++ +E+ +L+ M+QEW L
Subjt:  RTIWGKSPTPTPTPTSTTTSPPHPTPRISSRRITQQQQQQQRSAATSTTTNKG-GV-DLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWAL

Query:  LHSQEAELKATRAALLRRQ
        +  +EA+L A +A L+++Q
Subjt:  LHSQEAELKATRAALLRRQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACGCCGCCGGCGAAGCCCACCTGTTCCGACGGCGGAAGGCTGACCCATTTCAGCGAAGAAGAGGAAGTGAAACTCCTGAATTGCTACCTCGAAATGGGCAGATC
CAATAAGAAGAATCCCACTGTGGACTCCCCCACCTTGGAGCGCATCCATGGCGCTATGGGCACTGCATTCAGCCACTCCCACATCGCCGACATGCTCCACCGCCTGAAGC
TCCGTTACCACAAGTTCGCAAGAACCAAGTCCTTCGTCAAAACCCCCCATCACCGCAGGATTCTCGACATCGGCCGCACCATCTGGGGTAAATCCCCCACACCCACACCC
ACACCCACATCCACCACAACTAGCCCTCCACACCCAACTCCACGCATATCTTCACGCAGAATCACGCAACAACAACAACAACAACAACGCTCCGCTGCAACATCAACCAC
AACAAATAAAGGAGGGGTTGATTTGAACGATTTCCCCCTTCTCGTCTCTGAATTTTCTCGCCACTTTCCCGGAAACGGGGTCTGGAAAAAGGGGCTCCAGGAAATGGAGG
ACAACCGCTTGAGGGCTATGAATCAAGAGTGGGCTTTGTTGCATTCCCAAGAGGCAGAGCTTAAGGCAACAAGGGCTGCGTTGTTACGCCGCCAACACACTTCTGAAGAT
CTCAATTACTGTCCTAACTAA
mRNA sequenceShow/hide mRNA sequence
CCACGGTGTTGAAATAGAGAAATTGTAGTTCTATCCAGCCTCCTTTTTAGCCGTCTCATTGACTCTTCTCATCAAACTCCAATATTCCCATATACCCGGATGTCAACGCC
GCCGGCGAAGCCCACCTGTTCCGACGGCGGAAGGCTGACCCATTTCAGCGAAGAAGAGGAAGTGAAACTCCTGAATTGCTACCTCGAAATGGGCAGATCCAATAAGAAGA
ATCCCACTGTGGACTCCCCCACCTTGGAGCGCATCCATGGCGCTATGGGCACTGCATTCAGCCACTCCCACATCGCCGACATGCTCCACCGCCTGAAGCTCCGTTACCAC
AAGTTCGCAAGAACCAAGTCCTTCGTCAAAACCCCCCATCACCGCAGGATTCTCGACATCGGCCGCACCATCTGGGGTAAATCCCCCACACCCACACCCACACCCACATC
CACCACAACTAGCCCTCCACACCCAACTCCACGCATATCTTCACGCAGAATCACGCAACAACAACAACAACAACAACGCTCCGCTGCAACATCAACCACAACAAATAAAG
GAGGGGTTGATTTGAACGATTTCCCCCTTCTCGTCTCTGAATTTTCTCGCCACTTTCCCGGAAACGGGGTCTGGAAAAAGGGGCTCCAGGAAATGGAGGACAACCGCTTG
AGGGCTATGAATCAAGAGTGGGCTTTGTTGCATTCCCAAGAGGCAGAGCTTAAGGCAACAAGGGCTGCGTTGTTACGCCGCCAACACACTTCTGAAGATCTCAATTACTG
TCCTAACTAAACTCTTCTTTCTATTCCGATTACGGAAAGCTGTTCTTTCCATAGTTTGAGAAACTGAGCATTTCTTTCCTTTATGTCAGTGTTGTTCCTTGTATTTCCAT
AGGAACTGAGTACAGTTGTATTGTGTTGTATTGTTGTATCAGGATAATGAAGATGATTGATTCCATGCCATGTCATTGTGTAATGTTGTTCAACGCACGATTGTGATGCC
CAAGTATGCCAAAGTAGCAAATAAATCTTGGGATCTTATAGTTCTGATAAGCAAGCAGTTCATTAAAATGGTGCAAATTCTCAAAGTCTAGGTGTTGCAAAAATGAAGAA
ACAATACATCC
Protein sequenceShow/hide protein sequence
MSTPPAKPTCSDGGRLTHFSEEEEVKLLNCYLEMGRSNKKNPTVDSPTLERIHGAMGTAFSHSHIADMLHRLKLRYHKFARTKSFVKTPHHRRILDIGRTIWGKSPTPTP
TPTSTTTSPPHPTPRISSRRITQQQQQQQRSAATSTTTNKGGVDLNDFPLLVSEFSRHFPGNGVWKKGLQEMEDNRLRAMNQEWALLHSQEAELKATRAALLRRQHTSED
LNYCPN