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Sed0027224 (gene) of Chayote v1 genome

Gene IDSed0027224
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG02:30366310..30366564
RNA-Seq ExpressionSed0027224
SyntenySed0027224
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.8e-1461.9Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ
        MSVMMA    +  MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+   +V+DKGKN++ E QPQ  ST VASLSVQ
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]2.8e-1461.9Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ
        MSVMMA    +  MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+   +V+DKGKN++ E QPQ  ST VASLSVQ
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.8e-1461.9Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ
        MSVMMA    +  MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+   +V+DKGKN++ E QPQ  ST VASLSVQ
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.8e-1461.9Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ
        MSVMMA    +  MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+   +V+DKGKN++ E QPQ  ST VASLSVQ
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]2.8e-1461.9Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ
        MSVMMA    +  MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+   +V+DKGKN++ E QPQ  ST VASLSVQ
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ

TrEMBL top hitse value%identityAlignment
A0A5A7TYE9 Ty3-gypsy retrotransposon protein2.2e-1257.14Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ
        MSVMMA    +  MAE ERK+  +MK +EERD EI  L+ QM+ RETAESSQ+   +  DKGKN++ E QPQ  S  VASLSVQ
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ

A0A5A7VCU1 Ty3-gypsy retrotransposon protein8.3e-1255.95Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ
        MSVMM     +  MAE ERK+  +MK +EERD EI  L+ QMQ RET ESSQ+   +  DKGKN++ E QPQ  S  VASLSVQ
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ

A0A5A7VDN4 Ty3-gypsy retrotransposon protein6.3e-1255.95Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ
        MSVMMA    +  MAE ERK+  +MK +EERD EI  L+ QM+ RETAESSQ+   +  DKGKN++ + QPQ  S  VASLSVQ
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ

A0A5D3BY54 Ty3-gypsy retrotransposon protein4.9e-1257.14Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ
        MSVMMA    +  MAE ERK+  +MK +EERD EI  L+ QM+ RETAESSQ+   +  DKGKN++ E QPQ  S  VASLSVQ
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ

A0A5D3DH20 Ty3-gypsy retrotransposon protein1.1e-1155.95Show/hide
Query:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ
        MSVMMA    +  MAE +RK+  +MK +EERD EI  L+ QM+ RETAESSQ+   +  DKGKN++ E QPQ  S  VASLSVQ
Subjt:  MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAGATAGCTTA
CCTAAAAAATCAAATGCAGAACCGAGAGACGGCTGAATCAAGCCAGAGTCTACATGAGAGAGTTAATGATAAAGGAAAGAACCTTCTCTTTGAGGCACAACCACAACTGC
ACTCAACCCCAGTCGCTTCCTTATCTGTCCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAGATAGCTTA
CCTAAAAAATCAAATGCAGAACCGAGAGACGGCTGAATCAAGCCAGAGTCTACATGAGAGAGTTAATGATAAAGGAAAGAACCTTCTCTTTGAGGCACAACCACAACTGC
ACTCAACCCCAGTCGCTTCCTTATCTGTCCAGTAG
Protein sequenceShow/hide protein sequence
MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ