; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0027226 (gene) of Chayote v1 genome

Gene IDSed0027226
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG14:6426090..6426413
RNA-Seq ExpressionSed0027226
SyntenySed0027226
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON90739.1 Ribonuclease H-like domain containing protein [Trema orientale]6.1e-0635.29Show/hide
Query:  MDKIEWVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLF
        MD   W  +YL  FQ+A Q     S     PR +     W+ P    + LNVDA  S+S   VG G +I D  G  + A A   H+ L   +A+  AL F
Subjt:  MDKIEWVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLF

Query:  GL
        G+
Subjt:  GL

TXG53482.1 hypothetical protein EZV62_022651 [Acer yangbiense]4.7e-0633.98Show/hide
Query:  DKIEWVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFG
        D   W  DY+  F+ AN   +     AG PR +     W  P+ G F +N DA    + N+VG+G +I D  GK ++A+     +  +   A+A+A+LFG
Subjt:  DKIEWVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFG

Query:  LRL
        LR+
Subjt:  LRL

TXG67924.1 hypothetical protein EZV62_009199 [Acer yangbiense]9.8e-0428.43Show/hide
Query:  WVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRLG
        W  ++L  F+ A+      SH +    D  V   W  P  G F +N DA        +G+G+V+ D CG+   +S N  ++  +    +A+A+  G+RL 
Subjt:  WVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRLG

Query:  GE
        G+
Subjt:  GE

XP_024626530.1 uncharacterized protein LOC112416549 [Medicago truncatula]3.4e-0432.67Show/hide
Query:  VKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRLGG
        V+D   N  +  Q A  S + A   +     + WR P+ G F  NVDA   K  NRVG+G+ I D  G+ V A  ++    L+    +A+ LL+ +R   
Subjt:  VKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRLGG

Query:  E
        E
Subjt:  E

XP_024628663.1 uncharacterized protein LOC112417327 [Medicago truncatula]2.6e-0432.67Show/hide
Query:  VKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRLGG
        V+D   N  +  Q A  S + A   +     + WR P+ G F  NVDA   K  NRVG+G+ I D  G+ V A  ++    L+    +A+ LL+ +R   
Subjt:  VKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRLGG

Query:  E
        E
Subjt:  E

TrEMBL top hitse value%identityAlignment
A0A2Z6MRJ3 Uncharacterized protein8.1e-0440.62Show/hide
Query:  WRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLR
        W  P+AG +  NVDA+ S+S N+VG+GV I D+ G+ V+A   ++   L+  + +AL LL  L+
Subjt:  WRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLR

A0A5C7HA98 CCHC-type domain-containing protein2.3e-0633.98Show/hide
Query:  DKIEWVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFG
        D   W  DY+  F+ AN   +     AG PR +     W  P+ G F +N DA    + N+VG+G +I D  GK ++A+     +  +   A+A+A+LFG
Subjt:  DKIEWVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFG

Query:  LRL
        LR+
Subjt:  LRL

A0A5C7IG10 Uncharacterized protein4.7e-0428.43Show/hide
Query:  WVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRLG
        W  ++L  F+ A+      SH +    D  V   W  P  G F +N DA        +G+G+V+ D CG+   +S N  ++  +    +A+A+  G+RL 
Subjt:  WVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRLG

Query:  GE
        G+
Subjt:  GE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAAATTGAATGGGTAAAAGATTACCTCTCGAATTTTCAAAGTGCCAATCAAGGAGCTATTCGTTCATCTCATTATGCGGGTCCTCCTAGAGATCTGAATGTTGG
TAGCTATTGGCGCTTGCCTGAGGCTGGTCAGTTTGTCTTGAACGTAGATGCAACATGCTCAAAAAGTTGGAACCGAGTTGGCCTTGGGGTCGTCATCTGGGATCATTGCG
GTAAGTGTGTGATGGCGTCGGCTAACTTTCATCACTCCCAGCTAAATGCATTCTCAGCTGACGCTCTAGCCTTGTTGTTTGGCCTGAGGTTGGGGGGTGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAAAATTGAATGGGTAAAAGATTACCTCTCGAATTTTCAAAGTGCCAATCAAGGAGCTATTCGTTCATCTCATTATGCGGGTCCTCCTAGAGATCTGAATGTTGG
TAGCTATTGGCGCTTGCCTGAGGCTGGTCAGTTTGTCTTGAACGTAGATGCAACATGCTCAAAAAGTTGGAACCGAGTTGGCCTTGGGGTCGTCATCTGGGATCATTGCG
GTAAGTGTGTGATGGCGTCGGCTAACTTTCATCACTCCCAGCTAAATGCATTCTCAGCTGACGCTCTAGCCTTGTTGTTTGGCCTGAGGTTGGGGGGTGAGTAG
Protein sequenceShow/hide protein sequence
MDKIEWVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRLGGE