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Sed0027235 (gene) of Chayote v1 genome

Gene IDSed0027235
OrganismSechium edule (Chayote v1)
DescriptionElf4 domain-containing protein
Genome locationLG07:41196141..41196524
RNA-Seq ExpressionSed0027235
SyntenySed0027235
Gene Ontology termsGO:0000122 - negative regulation of transcription by RNA polymerase II (biological process)
GO:0009649 - entrainment of circadian clock (biological process)
GO:0009909 - regulation of flower development (biological process)
GO:0010017 - red or far-red light signaling pathway (biological process)
GO:0010114 - response to red light (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0048573 - photoperiodism, flowering (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
GO:0042803 - protein homodimerization activity (molecular function)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031907.1 protein EARLY FLOWERING 4 [Cucumis melo var. makuwa]4.7e-3772.31Show/hide
Query:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM
        MADN+PRRK K K S TT     +  S       FPD+ DAEVWASFDQ FRQVQSVLDRNR LIQQVNENHQ+RIPSNMV+NVALIQELNGNISKVVSM
Subjt:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN
        YSDFSSDFST F    +N+K R+GKRG+TN
Subjt:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN

KAG6600929.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia]5.5e-3873.85Show/hide
Query:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM
        MAD +PRRK K+K S TT     +  S      GFPD+ DA+VWASFDQ FRQVQSVLDRNRVLIQQVNENHQ+RIPSNMV+NVALIQELNGNISKVVSM
Subjt:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN
        YSDFSSDFS+ F    NN+KSRNGKRGS+N
Subjt:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN

XP_008463236.2 PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo]4.7e-3772.31Show/hide
Query:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM
        MADN+PRRK K K S TT     +  S       FPD+ DAEVWASFDQ FRQVQSVLDRNR LIQQVNENHQ+RIPSNMV+NVALIQELNGNISKVVSM
Subjt:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN
        YSDFSSDFST F    +N+K R+GKRG+TN
Subjt:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN

XP_022156910.1 protein EARLY FLOWERING 4-like [Momordica charantia]1.4e-3673.6Show/hide
Query:  MADNSPRRKPKSKAS-TTTAAAAISNGSGFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFS
        MADN+ RRK K+K S TTT     S+  GF D+ DAEVWASFDQ FRQVQSVLDRNRVLIQQVNENHQ+R+PSNMV+NVALIQELNGNISKVVSMYSDFS
Subjt:  MADNSPRRKPKSKAS-TTTAAAAISNGSGFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFS

Query:  SDFSTVFNNNNNNNKSRNGKRGSTN
        SDFS+ F         RNGKRGS+N
Subjt:  SDFSTVFNNNNNNNKSRNGKRGSTN

XP_022956860.1 protein EARLY FLOWERING 4-like [Cucurbita moschata]1.5e-3874.62Show/hide
Query:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM
        MAD +PRRK K+K S TT     +  S      GFPD+ DA+VWASFDQ FRQVQSVLDRNRVLIQQVNENHQ+RIPSNMV+NVALIQELNGNISKVVSM
Subjt:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN
        YSDFSSDFS+ F    NNNKSRNGKRGS+N
Subjt:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN

TrEMBL top hitse value%identityAlignment
A0A0A0KM35 Elf4 domain-containing protein1.1e-3671.54Show/hide
Query:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM
        MADN+PRRK K K S TT     +  S       FPD+ D EVWASFDQ FRQVQSVLDRNR LIQQVNENHQ+RIPSNMV+NVALIQELNGNISKVVSM
Subjt:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN
        YSDFSSDFST F    +N+K R GKRG+TN
Subjt:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN

A0A1S3CIT1 uncharacterized protein LOC1035014402.3e-3772.31Show/hide
Query:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM
        MADN+PRRK K K S TT     +  S       FPD+ DAEVWASFDQ FRQVQSVLDRNR LIQQVNENHQ+RIPSNMV+NVALIQELNGNISKVVSM
Subjt:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN
        YSDFSSDFST F    +N+K R+GKRG+TN
Subjt:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN

A0A5A7SR92 Protein EARLY FLOWERING 42.3e-3772.31Show/hide
Query:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM
        MADN+PRRK K K S TT     +  S       FPD+ DAEVWASFDQ FRQVQSVLDRNR LIQQVNENHQ+RIPSNMV+NVALIQELNGNISKVVSM
Subjt:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN
        YSDFSSDFST F    +N+K R+GKRG+TN
Subjt:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN

A0A6J1DRN5 protein EARLY FLOWERING 4-like6.6e-3773.6Show/hide
Query:  MADNSPRRKPKSKAS-TTTAAAAISNGSGFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFS
        MADN+ RRK K+K S TTT     S+  GF D+ DAEVWASFDQ FRQVQSVLDRNRVLIQQVNENHQ+R+PSNMV+NVALIQELNGNISKVVSMYSDFS
Subjt:  MADNSPRRKPKSKAS-TTTAAAAISNGSGFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFS

Query:  SDFSTVFNNNNNNNKSRNGKRGSTN
        SDFS+ F         RNGKRGS+N
Subjt:  SDFSTVFNNNNNNNKSRNGKRGSTN

A0A6J1GYX8 protein EARLY FLOWERING 4-like7.0e-3974.62Show/hide
Query:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM
        MAD +PRRK K+K S TT     +  S      GFPD+ DA+VWASFDQ FRQVQSVLDRNRVLIQQVNENHQ+RIPSNMV+NVALIQELNGNISKVVSM
Subjt:  MADNSPRRKPKSKASTTTAAAAISNGS------GFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN
        YSDFSSDFS+ F    NNNKSRNGKRGS+N
Subjt:  YSDFSSDFSTVFNNNNNNNKSRNGKRGSTN

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 46.4e-2165Show/hide
Query:  DAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNN
        D  +W + D+NFRQVQSVLDRNR LIQQVN+NHQ+R+  NM +NVALIQELNGNISKVV+MYSD ++ FS+ F+   N +
Subjt:  DAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNN

O80877 Protein ELF4-LIKE 14.4e-1449.38Show/hide
Query:  DAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNNK
        D EVW +    F++ Q  LD+NR LIQ+VNENH +RIP N+  NV LI E+NGNIS+V+ +YSD S +F+  F+      K
Subjt:  DAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNNK

Q570U6 Protein ELF4-LIKE 46.0e-1140.66Show/hide
Query:  SGFPD--DSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNNKS
        SGF D  + D ++  SF ++F  VQ +LD+NR+LI ++N+NH+++ P N+  NV LI+ELN NI +V S+Y D S  F+   + ++    S
Subjt:  SGFPD--DSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNNKS

Q8S8F5 Protein ELF4-LIKE 31.2e-1138.71Show/hide
Query:  ISNGSGFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNNKS
        IS   G     D ++  +F+++F QVQ++LD NR+LI ++N+NH+++IP N+  NV LI+ELN N+ +V  +Y D S++FS     ++  + S
Subjt:  ISNGSGFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNNKS

Q94BS8 Protein ELF4-LIKE 23.9e-1039.51Show/hide
Query:  ISNGSGFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFS
        + +G G     D ++  +F ++F QVQ +LD+NR+LI ++N+NH+++   ++  NV LI+ELN NI  V S+Y D S  F+
Subjt:  ISNGSGFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFS

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 44.3e-1240.66Show/hide
Query:  SGFPD--DSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNNKS
        SGF D  + D ++  SF ++F  VQ +LD+NR+LI ++N+NH+++ P N+  NV LI+ELN NI +V S+Y D S  F+   + ++    S
Subjt:  SGFPD--DSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNNKS

AT1G17455.2 ELF4-like 44.3e-1240.66Show/hide
Query:  SGFPD--DSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNNKS
        SGF D  + D ++  SF ++F  VQ +LD+NR+LI ++N+NH+++ P N+  NV LI+ELN NI +V S+Y D S  F+   + ++    S
Subjt:  SGFPD--DSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNNKS

AT2G06255.1 ELF4-like 38.6e-1338.71Show/hide
Query:  ISNGSGFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNNKS
        IS   G     D ++  +F+++F QVQ++LD NR+LI ++N+NH+++IP N+  NV LI+ELN N+ +V  +Y D S++FS     ++  + S
Subjt:  ISNGSGFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNNKS

AT2G29950.1 ELF4-like 13.1e-1549.38Show/hide
Query:  DAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNNK
        D EVW +    F++ Q  LD+NR LIQ+VNENH +RIP N+  NV LI E+NGNIS+V+ +YSD S +F+  F+      K
Subjt:  DAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNNK

AT2G40080.1 Protein of unknown function (DUF1313)4.5e-2265Show/hide
Query:  DAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNN
        D  +W + D+NFRQVQSVLDRNR LIQQVN+NHQ+R+  NM +NVALIQELNGNISKVV+MYSD ++ FS+ F+   N +
Subjt:  DAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNNNN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGACAACAGCCCTCGCCGGAAACCCAAATCAAAGGCATCCACGACCACCGCCGCCGCCGCCATCAGCAACGGCAGTGGCTTCCCCGACGACAGCGACGCCGAGGT
CTGGGCCTCCTTTGACCAAAACTTCCGGCAGGTCCAGTCGGTGCTGGACCGGAACAGAGTGCTGATTCAACAAGTGAACGAGAATCACCAGACTCGGATTCCCAGCAACA
TGGTCGAAAACGTGGCTTTGATCCAAGAACTCAATGGAAACATCTCCAAGGTTGTCTCCATGTACTCTGATTTCTCCTCTGACTTCTCCACTGTGTTCAATAACAACAAC
AACAACAACAAATCCAGAAATGGTAAAAGGGGTAGCACCAATTTAGAGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGACAACAGCCCTCGCCGGAAACCCAAATCAAAGGCATCCACGACCACCGCCGCCGCCGCCATCAGCAACGGCAGTGGCTTCCCCGACGACAGCGACGCCGAGGT
CTGGGCCTCCTTTGACCAAAACTTCCGGCAGGTCCAGTCGGTGCTGGACCGGAACAGAGTGCTGATTCAACAAGTGAACGAGAATCACCAGACTCGGATTCCCAGCAACA
TGGTCGAAAACGTGGCTTTGATCCAAGAACTCAATGGAAACATCTCCAAGGTTGTCTCCATGTACTCTGATTTCTCCTCTGACTTCTCCACTGTGTTCAATAACAACAAC
AACAACAACAAATCCAGAAATGGTAAAAGGGGTAGCACCAATTTAGAGGATTGA
Protein sequenceShow/hide protein sequence
MADNSPRRKPKSKASTTTAAAAISNGSGFPDDSDAEVWASFDQNFRQVQSVLDRNRVLIQQVNENHQTRIPSNMVENVALIQELNGNISKVVSMYSDFSSDFSTVFNNNN
NNNKSRNGKRGSTNLED