CuGenDBv2

Gene ID	Sed0027241
Organism	Sechium edule (Chayote v1)
Description	rRNA adenine N(6)-methyltransferase
Genome location	LG02:51575931..51581607
RNA-Seq Expression	Sed0027241
Synteny	Sed0027241
Gene Ontology terms	GO:0031167 - rRNA methylation (biological process) GO:0005759 - mitochondrial matrix (cellular component) GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity (molecular function)
InterPro domains	IPR001737 - Ribosomal RNA adenine methyltransferase KsgA/Erm IPR020598 - Ribosomal RNA adenine methylase transferase, N-terminal IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049001.1 ribosomal RNA small subunit methyltransferase [Cucumis melo var. makuwa]

1.4e-38

64.71

Show/hide

Query:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD
        N ++NS ATVL VEKDSYM+ALVD          VLN++FVKCHVSS MMS LKSIE SE++SQP+KVVSNIPF ISTDI+KQLLP   +     +S+  
Subjt:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD

Query:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI
        L L  QEE ALRLVE+SLR SEY P NVFVNFYSDP+ KF+ PRTNFFP P++
Subjt:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI

XP_004133887.1 ribosomal RNA small subunit methyltransferase, chloroplastic [Cucumis sativus]

5.2e-38

64.05

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Query:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD
        N ++NS ATVL VEKDSYM+ LVD          VLN++FVKC+VSS MMS LKSIE SE++SQP+KVVSNIPF ISTDI+KQLLP   +     +S+  
Subjt:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD

Query:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI
        L L  QEE ALRLVE+SLRTSEY P NVFVNFYSDP+ KF+ PRTNFFP P++
Subjt:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI

XP_008438106.1 PREDICTED: ribosomal RNA small subunit methyltransferase, chloroplastic [Cucumis melo]

1.4e-38

64.71

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Query:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD
        N ++NS ATVL VEKDSYM+ALVD          VLN++FVKCHVSS MMS LKSIE SE++SQP+KVVSNIPF ISTDI+KQLLP   +     +S+  
Subjt:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD

Query:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI
        L L  QEE ALRLVE+SLR SEY P NVFVNFYSDP+ KF+ PRTNFFP P++
Subjt:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI

XP_022147255.1 ribosomal RNA small subunit methyltransferase, chloroplastic isoform X1 [Momordica charantia]

1.4e-38

62.75

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Query:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD
        N ++NS ATVL VEKD YM+A+VD          VLN++FVKCHVSS MMS LK +E S+SKSQP+KVVSNIPF ISTD++KQLLP  ++     +S+  
Subjt:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD

Query:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI
        L L  QEETALRLVE+SLRTSEY P N+FVNFYSDP+FKF+ PRT+FFP P++
Subjt:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI

XP_022147256.1 ribosomal RNA small subunit methyltransferase, chloroplastic isoform X2 [Momordica charantia]

6.8e-38

47.35

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Query:  MAGPPVPNIFLPPVSPLALHKTLNPIYRRLLPPPAYGGELHAQLLLLQQ-------RVVEEDFTWISRKIGNSVLNSDATV---LVEKDSYMSALVD---
        MA P +PN+FLPP+SP++   T +P +   +     G       +           RV  +D+    R      LNS   +    + +D YM+A+VD   
Subjt:  MAGPPVPNIFLPPVSPLALHKTLNPIYRRLLPPPAYGGELHAQLLLLQQ-------RVVEEDFTWISRKIGNSVLNSDATV---LVEKDSYMSALVD---

Query:  -------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTDLYLNYQEETALRLVESSLRTSEYGPSN
               VLN++FVKCHVSS MMS LK +E S+SKSQP+KVVSNIPF ISTD++KQLLP  ++     +S+  L L  QEETALRLVE+SLRTSEY P N
Subjt:  -------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTDLYLNYQEETALRLVESSLRTSEYGPSN

Query:  VFVNFYSDPDFKFRAPRTNFFPHPDI
        +FVNFYSDP+FKF+ PRT+FFP P++
Subjt:  VFVNFYSDPDFKFRAPRTNFFPHPDI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L7J6 rRNA adenine N(6)-methyltransferase

2.5e-38

64.05

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Query:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD
        N ++NS ATVL VEKDSYM+ LVD          VLN++FVKC+VSS MMS LKSIE SE++SQP+KVVSNIPF ISTDI+KQLLP   +     +S+  
Subjt:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD

Query:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI
        L L  QEE ALRLVE+SLRTSEY P NVFVNFYSDP+ KF+ PRTNFFP P++
Subjt:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI

A0A1S3AW66 rRNA adenine N(6)-methyltransferase

6.6e-39

64.71

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Query:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD
        N ++NS ATVL VEKDSYM+ALVD          VLN++FVKCHVSS MMS LKSIE SE++SQP+KVVSNIPF ISTDI+KQLLP   +     +S+  
Subjt:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD

Query:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI
        L L  QEE ALRLVE+SLR SEY P NVFVNFYSDP+ KF+ PRTNFFP P++
Subjt:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI

A0A5A7U5Y1 rRNA adenine N(6)-methyltransferase

6.6e-39

64.71

Show/hide

Query:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD
        N ++NS ATVL VEKDSYM+ALVD          VLN++FVKCHVSS MMS LKSIE SE++SQP+KVVSNIPF ISTDI+KQLLP   +     +S+  
Subjt:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD

Query:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI
        L L  QEE ALRLVE+SLR SEY P NVFVNFYSDP+ KF+ PRTNFFP P++
Subjt:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI

A0A6J1CZM8 rRNA adenine N(6)-methyltransferase

6.6e-39

62.75

Show/hide

Query:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD
        N ++NS ATVL VEKD YM+A+VD          VLN++FVKCHVSS MMS LK +E S+SKSQP+KVVSNIPF ISTD++KQLLP  ++     +S+  
Subjt:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD

Query:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI
        L L  QEETALRLVE+SLRTSEY P N+FVNFYSDP+FKF+ PRT+FFP P++
Subjt:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI

A0A6J1D1T5 rRNA adenine N(6)-methyltransferase

3.3e-38

47.35

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Query:  MAGPPVPNIFLPPVSPLALHKTLNPIYRRLLPPPAYGGELHAQLLLLQQ-------RVVEEDFTWISRKIGNSVLNSDATV---LVEKDSYMSALVD---
        MA P +PN+FLPP+SP++   T +P +   +     G       +           RV  +D+    R      LNS   +    + +D YM+A+VD   
Subjt:  MAGPPVPNIFLPPVSPLALHKTLNPIYRRLLPPPAYGGELHAQLLLLQQ-------RVVEEDFTWISRKIGNSVLNSDATV---LVEKDSYMSALVD---

Query:  -------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTDLYLNYQEETALRLVESSLRTSEYGPSN
               VLN++FVKCHVSS MMS LK +E S+SKSQP+KVVSNIPF ISTD++KQLLP  ++     +S+  L L  QEETALRLVE+SLRTSEY P N
Subjt:  -------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTDLYLNYQEETALRLVESSLRTSEYGPSN

Query:  VFVNFYSDPDFKFRAPRTNFFPHPDI
        +FVNFYSDP+FKF+ PRT+FFP P++
Subjt:  VFVNFYSDPDFKFRAPRTNFFPHPDI

SwissProt top hits

e value

%identity

Alignment

O65090 Ribosomal RNA small subunit methyltransferase, chloroplastic

5.6e-27

47.71

Show/hide

Query:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD
        N ++N  ATVL +EKD +M  LV           VL ++FVKCH+ S M+S L++   S   S  +KVVSN+PF ISTD+VK LLP   +  K       
Subjt:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD

Query:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI
        + L  Q+E ALRLVE +LRTSEY P N+ +NFYS+P++ FR PR NFFP P +
Subjt:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI

Arabidopsis top hits

e value

%identity

Alignment

AT1G01860.1 Ribosomal RNA adenine dimethylase family protein

4.0e-28

47.71

Show/hide

Query:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD
        N ++N  ATVL +EKD +M  LV           VL ++FVKCH+ S M+S L++   S   S  +KVVSN+PF ISTD+VK LLP   +  K       
Subjt:  NSVLNSDATVL-VEKDSYMSALVD----------VLNKEFVKCHVSSRMMSSLKSIETSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTD

Query:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI
        + L  Q+E ALRLVE +LRTSEY P N+ +NFYS+P++ FR PR NFFP P +
Subjt:  LYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDI

Sequences

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CDS sequence

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ATGGCGGGGCCGCCAGTTCCCAATATTTTCCTCCCGCCAGTTTCGCCATTGGCTCTCCACAAAACCCTAAATCCTATTTACCGGCGACTACTCCCGCCGCCGGCGTACGG
CGGAGAACTCCATGCGCAGCTTCTTCTTCTGCAACAGCGAGTGGTAGAGGAAGACTTCACTTGGATTTCTCGGAAAATTGGTAACTCTGTACTTAACTCGGATGCTACAG
TGCTTGTTGAAAAGGATTCTTATATGAGTGCTCTTGTTGATGTTCTAAACAAGGAGTTTGTTAAATGTCATGTGAGCTCACGTATGATGTCTTCACTCAAAAGTATTGAG
ACGTCTGAGTCAAAATCACAACCTTCAAAAGTGGTCTCCAACATACCATTCAAAATAAGTACAGATATAGTTAAACAACTTCTTCCAACAATCCAACTTCAATATAAGTA
CAGATATTCTGATACTGATCTGTATTTAAACTACCAGGAGGAGACAGCTTTACGCTTAGTGGAATCATCTTTGAGAACATCTGAATATGGACCCAGCAACGTATTTGTCA
ATTTTTATTCAGATCCTGATTTCAAATTCAGAGCCCCAAGGACAAACTTTTTCCCTCACCCTGATATCACACCACGTTGGGAAATCATACAATCTCTCCATGTCTTTCTT
TACTGCCTCTCACTTTCCCATTTTGATCAATTTATAAGCATTCATCACTCCCACTCAATTCACTTCACTTCAATTCAATTGAACTCAATTTTTATTTTTGATTATTATTA
TTATTTATTATTACAAATTGCTCTGTTTTCTTGA

mRNA sequence

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Protein sequence

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MAGPPVPNIFLPPVSPLALHKTLNPIYRRLLPPPAYGGELHAQLLLLQQRVVEEDFTWISRKIGNSVLNSDATVLVEKDSYMSALVDVLNKEFVKCHVSSRMMSSLKSIE
TSESKSQPSKVVSNIPFKISTDIVKQLLPTIQLQYKYRYSDTDLYLNYQEETALRLVESSLRTSEYGPSNVFVNFYSDPDFKFRAPRTNFFPHPDITPRWEIIQSLHVFL
YCLSLSHFDQFISIHHSHSIHFTSIQLNSIFIFDYYYYLLLQIALFS

Sed0027241 (gene) of Chayote v1 genome