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Sed0027285 (gene) of Chayote v1 genome

Gene IDSed0027285
OrganismSechium edule (Chayote v1)
Descriptionprotein RADIALIS-like 3
Genome locationLG13:21575464..21579475
RNA-Seq ExpressionSed0027285
SyntenySed0027285
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147867.1 protein RADIALIS-like 3 [Cucumis sativus]1.7e-3180.46Show/hide
Query:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNS----SGFCFLDQDQR
        MGSGS WTAKQNKVFENALAIYD+D+PERWQNLARAVGGKTA EVKRHYE LVEDV++IE+GQVPFPNY  S     GF FLDQ+QR
Subjt:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNS----SGFCFLDQDQR

XP_008465612.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]2.7e-3280.46Show/hide
Query:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSS----GFCFLDQDQR
        MGSGS WTAKQNKVFENALAIYD+D+PERW NLARAVGGKTA EVKRHYE LVEDV++IE+GQVPFPNY  S     GFCFLDQ+QR
Subjt:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSS----GFCFLDQDQR

XP_022941099.1 protein RADIALIS-like 3 [Cucurbita moschata]1.2e-2977.01Show/hide
Query:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNS----SGFCFLDQDQR
        M SGSKWTAKQNK+FENALAIYDRD+PERW NLARAVGGKTA EVKRHYE LVEDV++IESGQVPFP Y  S    +GF F+D++QR
Subjt:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNS----SGFCFLDQDQR

XP_022981878.1 protein RADIALIS-like 3 [Cucurbita maxima]1.6e-2977.01Show/hide
Query:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNS----SGFCFLDQDQR
        M SGSKWTAKQNK+FENALAIYDRD+PERW NLARAVGGKTA EVKRHYE LVEDV++IESGQVPFP Y  S     GF F+D++QR
Subjt:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNS----SGFCFLDQDQR

XP_038905673.1 protein RADIALIS-like 3 [Benincasa hispida]1.7e-3178.16Show/hide
Query:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSS----GFCFLDQDQR
        MGSGS WTAKQNKVFENALAIYD+D+PERW NLARAVGGKTA EVKRHYE LVEDV++IE+GQVPFPNY  S     GFCF+D++QR
Subjt:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSS----GFCFLDQDQR

TrEMBL top hitse value%identityAlignment
A0A0A0LGK8 SANT domain-containing protein8.4e-3280.46Show/hide
Query:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNS----SGFCFLDQDQR
        MGSGS WTAKQNKVFENALAIYD+D+PERWQNLARAVGGKTA EVKRHYE LVEDV++IE+GQVPFPNY  S     GF FLDQ+QR
Subjt:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNS----SGFCFLDQDQR

A0A1S3CPA0 protein RADIALIS-like 31.3e-3280.46Show/hide
Query:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSS----GFCFLDQDQR
        MGSGS WTAKQNKVFENALAIYD+D+PERW NLARAVGGKTA EVKRHYE LVEDV++IE+GQVPFPNY  S     GFCFLDQ+QR
Subjt:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSS----GFCFLDQDQR

A0A5D3D7Z0 Protein RADIALIS-like 31.3e-3280.46Show/hide
Query:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSS----GFCFLDQDQR
        MGSGS WTAKQNKVFENALAIYD+D+PERW NLARAVGGKTA EVKRHYE LVEDV++IE+GQVPFPNY  S     GFCFLDQ+QR
Subjt:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSS----GFCFLDQDQR

A0A6J1FM85 protein RADIALIS-like 36.0e-3077.01Show/hide
Query:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNS----SGFCFLDQDQR
        M SGSKWTAKQNK+FENALAIYDRD+PERW NLARAVGGKTA EVKRHYE LVEDV++IESGQVPFP Y  S    +GF F+D++QR
Subjt:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNS----SGFCFLDQDQR

A0A6J1J3A1 protein RADIALIS-like 37.9e-3077.01Show/hide
Query:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNS----SGFCFLDQDQR
        M SGSKWTAKQNK+FENALAIYDRD+PERW NLARAVGGKTA EVKRHYE LVEDV++IESGQVPFP Y  S     GF F+D++QR
Subjt:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNS----SGFCFLDQDQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.4e-2366.67Show/hide
Query:  SGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSSG
        S   WTAKQNK FE ALA YD+D+P RWQN+A+ VGGKT  EVKRHYE LV+D++ IE+G VPFPNY  S G
Subjt:  SGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSSG

Q58FS3 Transcription factor RADIALIS3.1e-2364.38Show/hide
Query:  GSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSSG
        GSG  W+AK+NK FE ALA+YD+D+P+RW N+ARAV G+T  EVK+HYE LVED+  IESG+VPFPNY  + G
Subjt:  GSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSSG

Q6NNN0 Protein RADIALIS-like 32.2e-2161.11Show/hide
Query:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNS
        M S + WT K+NK+FE ALA YD+D+P+RW N+ARAVGGK+A EV+RHYE L+ DV+ IESG+ P PNY ++
Subjt:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNS

Q8GW75 Protein RADIALIS-like 58.4e-2163.77Show/hide
Query:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNY
        M S S WT+KQNK+FE ALA+YD+D+P+RWQN+A+AVG K+A EVKRHY+ LVED+  IE   VP P Y
Subjt:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNY

Q9SIJ5 Protein RADIALIS-like 21.7e-2163.01Show/hide
Query:  GSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSSG
        GSGS WT KQNK FE ALA+YD+D+P+RW N+ARAVGGKT  E KR Y+ LV D+  IE+G VPFP+Y  ++G
Subjt:  GSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSSG

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 56.0e-2263.77Show/hide
Query:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNY
        M S S WT+KQNK+FE ALA+YD+D+P+RWQN+A+AVG K+A EVKRHY+ LVED+  IE   VP P Y
Subjt:  MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNY

AT1G75250.1 RAD-like 64.6e-2254.55Show/hide
Query:  SKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYN--NSSGFCFLDQDQRSCCRITY
        S WT  QNK+FE ALA+YD+D+P+RW N+A+AVGGKT  EVKRHY+ LVED+  IE+G+VP PNY    S+     D D R   +  Y
Subjt:  SKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYN--NSSGFCFLDQDQRSCCRITY

AT1G75250.2 RAD-like 67.8e-2266.15Show/hide
Query:  SKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNY
        S WT  QNK+FE ALA+YD+D+P+RW N+A+AVGGKT  EVKRHY+ LVED+  IE+G+VP PNY
Subjt:  SKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNY

AT2G21650.1 Homeodomain-like superfamily protein1.2e-2263.01Show/hide
Query:  GSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSSG
        GSGS WT KQNK FE ALA+YD+D+P+RW N+ARAVGGKT  E KR Y+ LV D+  IE+G VPFP+Y  ++G
Subjt:  GSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSSG

AT4G39250.1 RAD-like 19.8e-2566.67Show/hide
Query:  SGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSSG
        S   WTAKQNK FE ALA YD+D+P RWQN+A+ VGGKT  EVKRHYE LV+D++ IE+G VPFPNY  S G
Subjt:  SGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTCCGGATCGAAATGGACGGCGAAGCAGAACAAAGTGTTCGAAAATGCATTGGCGATATACGACAGAGACTCGCCGGAGCGGTGGCAGAACCTCGCCAGAGCCGT
CGGCGGGAAGACGGCGGCGGAGGTGAAACGCCACTACGAAGAGCTCGTCGAAGATGTCCACAGGATCGAATCCGGCCAAGTTCCGTTCCCCAATTATAATAATTCCTCAG
GATTTTGCTTTCTTGACCAAGATCAACGGTCTTGCTGCAGAATCACTTACAAAACTTGTCGTTGTAAACTTCCTTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAAAGAAAGAAAACCAAGTGTGATCAGAAAATTGAGATTGTAATTTGATATTGTTGAAACTAAAAGAATGGGGTCCGGATCGAAATGGACGGCGAAGCAGAAC
AAAGTGTTCGAAAATGCATTGGCGATATACGACAGAGACTCGCCGGAGCGGTGGCAGAACCTCGCCAGAGCCGTCGGCGGGAAGACGGCGGCGGAGGTGAAACGCCACTA
CGAAGAGCTCGTCGAAGATGTCCACAGGATCGAATCCGGCCAAGTTCCGTTCCCCAATTATAATAATTCCTCAGGATTTTGCTTTCTTGACCAAGATCAACGGTCTTGCT
GCAGAATCACTTACAAAACTTGTCGTTGTAAACTTCCTTGAGCTTTGCATGTGCAGAAATCGAACTCCATTTGACTTTATGTTGCGGGAGTTTTATCAATTTGGTAGGAC
CTGAAGGTTTTTCTAGATTTGAAGGTGTTGAGGTTTTAATTGCAAAATGGGTTTGGAAAAGAGTAGCCACAAACAAAAGAGAAAGAATGAGAAAAGAACAAAAGTTAAAT
GGGTTTAAAGAAGAAGATGAGCTGCATTTTTTTTTTAAAGAATATAGCCATTGTTGGAAGCAGAGACGGTAAAGGAGAGGAAAAGAGGAATTTTTATTATTATTATTTTT
TTTAACTTTGTATCTTCATAGATTTAAAAATGTGTGTGTTAAAAATGTGTGTGTTGACTGAGAAATTTCGGCCAGTAAAAAATTGCCACGTCATTTATAAATAACTGACA
AAATTTAATTAATTTTCTAAGCCAATTACAAATTCATAATTATCTCAAAGTTAATTGGACCAGGCGTGGATTTATTTGGAACTCGAGTTCAAATTAAACGAAACTCAAAT
ACCATTTAAGCCCAAGCCTAATGGTTGGACCCAATATAGTCAATTCCAAAGGCCCAAGAAGCTCATGGGGACCAAGCCCACGAGGCAAAGAAATCTCTATAAATAGAGAG
CTCCCCTCATTTGCTAAAGGAGAACACAAAAAGAGAGGACCGAGGCATTCAACCTAAAGACTTAGAGATTCAGGGAGAATTCAGAATATCTTGCCTTTCAAGTCTAGAAA
CTTTCAAGATCCATCAGGACAAAGATTCCTACAAATTGATCACCTATTCGATTGCAAGTTGAAGATTCAATCACCCCTGTCTGAGAACAAGTTCGCAAGTCCTATGGATA
AACATTAGAGATTGTAACACACGC
Protein sequenceShow/hide protein sequence
MGSGSKWTAKQNKVFENALAIYDRDSPERWQNLARAVGGKTAAEVKRHYEELVEDVHRIESGQVPFPNYNNSSGFCFLDQDQRSCCRITYKTCRCKLP