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Sed0027289 (gene) of Chayote v1 genome

Gene IDSed0027289
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG05:32658699..32658974
RNA-Seq ExpressionSed0027289
SyntenySed0027289
Gene Ontology termsGO:0045168 - cell-cell signaling involved in cell fate commitment (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR039617 - CLAVATA3/ESR (CLE)-related protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061638.1 hypothetical protein E6C27_scaffold212G00060 [Cucumis melo var. makuwa]1.2e-1564.84Show/hide
Query:  LRFKTNLAPLMAVLFMVMLVAAAAGRHAPP-PSTAVLSTEK-NSNIMIIMRKLGYSKRKMEHFKRV-SSSTERYTPGGPDSQHHSHSPRSP
        LR    LAPLMAVLFMVMLV AAA RHA   P T   +TE+ +S+  +IMRK GYSKR+MEH +R+ SSST RY PGGPDSQHHS  PR P
Subjt:  LRFKTNLAPLMAVLFMVMLVAAAAGRHAPP-PSTAVLSTEK-NSNIMIIMRKLGYSKRKMEHFKRV-SSSTERYTPGGPDSQHHSHSPRSP

KAE8647339.1 hypothetical protein Csa_003556, partial [Cucumis sativus]2.2e-1260.22Show/hide
Query:  LRFKTNLA-PLMAVLFMVMLVAAAAGRHAPPPSTAVL-----STEK-NSNIMIIMRKLGYSKRKMEHFKRV-SSSTERYTPGGPDSQHHSHSP
        LRF   LA PLMAVLFM MLV AA   HA    TA+L     +TE+ +S+  ++MRK GYSKR+MEH +R+ SSSTERY PGGPDSQHHS  P
Subjt:  LRFKTNLA-PLMAVLFMVMLVAAAAGRHAPPPSTAVL-----STEK-NSNIMIIMRKLGYSKRKMEHFKRV-SSSTERYTPGGPDSQHHSHSP

KAG6572409.1 hypothetical protein SDJN03_29137, partial [Cucurbita argyrosperma subsp. sororia]2.3e-1758.51Show/hide
Query:  RFKTNLAPLMAVLFMVMLVAAAAGRHAPPPSTAVLS-------TEKNSNIMIIMRKLGYSKRKMEHFKRVSSSTERYTPGGPDSQHHSHSPRSP
        RF    APL AV+FMVMLV AAAGRHA P  T   +       +  +S+  +IMR+LGY+K +MEH +R+SSST RY PGGPDSQHHS SPRSP
Subjt:  RFKTNLAPLMAVLFMVMLVAAAAGRHAPPPSTAVLS-------TEKNSNIMIIMRKLGYSKRKMEHFKRVSSSTERYTPGGPDSQHHSHSPRSP

KAG6589262.1 hypothetical protein SDJN03_17827, partial [Cucurbita argyrosperma subsp. sororia]1.8e-2269.23Show/hide
Query:  MAKLRFKTNLAPLMAVLFMVMLVAAAAGRHAPPPSTAVLSTEKNSNIMIIMRKLGYSKRKMEHFKRVSSSTERYTPGGPDSQHHSHSPRSP
        MA LRF + LAP MAVLF+ ML+   AGRHA PP T    TE +S+IM IMRK GYSK +MEH KR+SSSTERYTPGGPDSQHHSH PR P
Subjt:  MAKLRFKTNLAPLMAVLFMVMLVAAAAGRHAPPPSTAVLSTEKNSNIMIIMRKLGYSKRKMEHFKRVSSSTERYTPGGPDSQHHSHSPRSP

TrEMBL top hitse value%identityAlignment
A0A0A0KGI4 Uncharacterized protein1.3e-1360.42Show/hide
Query:  LRFKTNLA-PLMAVLFMVMLVAAAAGRHAPPPSTAVL-----STEK-NSNIMIIMRKLGYSKRKMEHFKRV-SSSTERYTPGGPDSQHHSHSPRSP
        LRF   LA PLMAVLFM MLV AA   HA    TA+L     +TE+ +S+  ++MRK GYSKR+MEH +R+ SSSTERY PGGPDSQHHS  PR P
Subjt:  LRFKTNLA-PLMAVLFMVMLVAAAAGRHAPPPSTAVL-----STEK-NSNIMIIMRKLGYSKRKMEHFKRV-SSSTERYTPGGPDSQHHSHSPRSP

A0A5D3C664 Uncharacterized protein6.0e-1664.84Show/hide
Query:  LRFKTNLAPLMAVLFMVMLVAAAAGRHAPP-PSTAVLSTEK-NSNIMIIMRKLGYSKRKMEHFKRV-SSSTERYTPGGPDSQHHSHSPRSP
        LR    LAPLMAVLFMVMLV AAA RHA   P T   +TE+ +S+  +IMRK GYSKR+MEH +R+ SSST RY PGGPDSQHHS  PR P
Subjt:  LRFKTNLAPLMAVLFMVMLVAAAAGRHAPP-PSTAVLSTEK-NSNIMIIMRKLGYSKRKMEHFKRV-SSSTERYTPGGPDSQHHSHSPRSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGCTTCGTTTCAAAACAAACCTTGCTCCATTAATGGCTGTCCTTTTCATGGTGATGCTTGTCGCCGCCGCAGCCGGCCGCCATGCACCGCCGCCGTCGACGGC
GGTGCTGAGCACTGAGAAAAACAGCAACATTATGATAATTATGCGTAAATTAGGATATAGCAAAAGGAAAATGGAGCATTTTAAAAGGGTTTCTTCTTCTACTGAGAGGT
ACACTCCTGGAGGACCGGATTCTCAGCATCATTCTCACTCTCCTCGTTCACCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAGCTTCGTTTCAAAACAAACCTTGCTCCATTAATGGCTGTCCTTTTCATGGTGATGCTTGTCGCCGCCGCAGCCGGCCGCCATGCACCGCCGCCGTCGACGGC
GGTGCTGAGCACTGAGAAAAACAGCAACATTATGATAATTATGCGTAAATTAGGATATAGCAAAAGGAAAATGGAGCATTTTAAAAGGGTTTCTTCTTCTACTGAGAGGT
ACACTCCTGGAGGACCGGATTCTCAGCATCATTCTCACTCTCCTCGTTCACCTTAA
Protein sequenceShow/hide protein sequence
MAKLRFKTNLAPLMAVLFMVMLVAAAAGRHAPPPSTAVLSTEKNSNIMIIMRKLGYSKRKMEHFKRVSSSTERYTPGGPDSQHHSHSPRSP