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Sed0027315 (gene) of Chayote v1 genome

Gene IDSed0027315
OrganismSechium edule (Chayote v1)
DescriptionClassical arabinogalactan protein 9
Genome locationLG13:6670803..6671802
RNA-Seq ExpressionSed0027315
SyntenySed0027315
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053440.1 classical arabinogalactan protein 9 [Cucumis melo var. makuwa]2.0e-3273.68Show/hide
Query:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPP
        MGF FVM LAL ATSCMAQ P  APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPATPPPATPPPA+ PP++PP  + P A+PPT+ PP+  ++PP
Subjt:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPP

Query:  TATPPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA
        TA PP + P +PPT   SSPPSPPPEGN PT  PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Subjt:  TATPPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA

KAG6600667.1 hypothetical protein SDJN03_05900, partial [Cucurbita argyrosperma subsp. sororia]6.6e-2366.67Show/hide
Query:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPA-TPPPATPPPATPPPATPPPATPPPATPPT---ATPPTATPPTAT
        MG  F+MVLA LATS MAQ P  APAQPPTTPAVPPP +TPPPAA+PPPATPPPA TPPPATPPPATPPPATPPPATPP ATPP+   ATPPT+  PT++
Subjt:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPA-TPPPATPPPATPPPATPPPATPPPATPPT---ATPPTATPPTAT

Query:  ---PPTATPPTQP-PATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA
           PP   P + P P+  P+   +SPPSPP EGN P+  PGPN  PPPPE NGA ++SR  ++G AV+G  LAMVFA
Subjt:  ---PPTATPPTQP-PATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA

TYK14854.1 vegetative cell wall protein gp1 [Cucumis melo var. makuwa]2.0e-3273.68Show/hide
Query:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPP
        MGF FVM LAL ATSCMAQ P  APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPATPPPATPPPA+ PP++PP  + P A+PPT+ PP+  ++PP
Subjt:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPP

Query:  TATPPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA
        TA PP + P +PPT   SSPPSPPPEGN PT  PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Subjt:  TATPPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA

XP_008455676.1 PREDICTED: vegetative cell wall protein gp1 [Cucumis melo]2.0e-3273.68Show/hide
Query:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPP
        MGF FVM LAL ATSCMAQ P  APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPATPPPATPPPA+ PP++PP  + P A+PPT+ PP+  ++PP
Subjt:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPP

Query:  TATPPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA
        TA PP + P +PPT   SSPPSPPPEGN PT  PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Subjt:  TATPPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA

XP_023545089.1 classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo]7.1e-2567.43Show/hide
Query:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPP-ATPPPATPPPATPPPATPPPATPPPATPPTATP--PTATPPTATP
        MG  F+M+LA LATS MAQ P  APAQPPTTPAVPPP +TPPPAA+PPPATPPP ATPPPATPPPATPPPATPPPATPP ATPP++ P  P ATPPT+  
Subjt:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPP-ATPPPATPPPATPPPATPPPATPPPATPPTATP--PTATPPTATP

Query:  PTAT---PPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA
        PT++   PP + PA+ P+   +SPPSPP EGN P+  PGPN  PPPPE NGA ++SR  ++G AV+G  LAMVFA
Subjt:  PTAT---PPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA

TrEMBL top hitse value%identityAlignment
A0A0A0L0L1 Uncharacterized protein7.6e-3374.27Show/hide
Query:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPP
        MGF FVM LAL ATSCMAQ P  APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPATPPPATPPPA+ PP++PP  + P A+PPT+ PP+  ++PP
Subjt:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPP

Query:  TATPPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA
        TA PP + P +PPT   SSPPSPPPEGN PT  PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAMVFA
Subjt:  TATPPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA

A0A1S3C1K1 vegetative cell wall protein gp19.9e-3373.68Show/hide
Query:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPP
        MGF FVM LAL ATSCMAQ P  APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPATPPPATPPPA+ PP++PP  + P A+PPT+ PP+  ++PP
Subjt:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPP

Query:  TATPPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA
        TA PP + P +PPT   SSPPSPPPEGN PT  PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Subjt:  TATPPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA

A0A5A7UE17 Classical arabinogalactan protein 99.9e-3373.68Show/hide
Query:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPP
        MGF FVM LAL ATSCMAQ P  APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPATPPPATPPPA+ PP++PP  + P A+PPT+ PP+  ++PP
Subjt:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPP

Query:  TATPPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA
        TA PP + P +PPT   SSPPSPPPEGN PT  PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Subjt:  TATPPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA

A0A5D3CV77 Vegetative cell wall protein gp19.9e-3373.68Show/hide
Query:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPP
        MGF FVM LAL ATSCMAQ P  APAQPP+TPAVPPP +TPPPAA+PPPATPPPATPPPATPPPATPPPA+ PP++PP  + P A+PPT+ PP+  ++PP
Subjt:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPT--ATPP

Query:  TATPPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA
        TA PP + P +PPT   SSPPSPPPEGN PT  PGP+PPPPPPEGNGAA+VSRG+++GGAVAGAFLAM+FA
Subjt:  TATPPTQPPATPPTSKNSSPPSPPPEGNAPT--PGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA

A0A6J1J5L5 classical arabinogalactan protein 4-like7.9e-2266.27Show/hide
Query:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPTATPPTA
        MGF FVMVLAL ATS MAQ P  APAQPPTTPAVPPP +TPPP     PATPPPA    ATPPPATPPPA  PP + PP++PP  T P A+PPT+  P  
Subjt:  MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPTATPPTA

Query:  TPPTQPPATPPTSKNSSPPSPPPEGNAP--TPGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA
         PP + PA+ PT  ++SPPSPP EG  P  +PGPN PPPPP  NGAA VSRGV++GGAVAGA LAMVFA
Subjt:  TPPTQPPATPPTSKNSSPPSPPPEGNAP--TPGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTTCATTTTGTGATGGTTTTGGCCTTGTTGGCTACTTCCTGCATGGCTCAGCCTCCCGCCGGAGCTCCGGCTCAGCCTCCCACCACCCCCGCCGTCCCGCCGCC
TGCCGCCACCCCACCACCTGCCGCCACCCCACCTCCGGCTACCCCACCTCCTGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCAC
CAGCTACCCCACCGCCGGCCACCCCACCAACGGCCACCCCTCCGACGGCCACCCCACCGACGGCCACCCCACCGACGGCTACCCCACCTACCCAACCGCCGGCGACACCT
CCTACATCGAAGAACTCCTCGCCGCCGTCACCACCACCGGAAGGAAACGCCCCCACCCCTGGACCGAACCCGCCGCCGCCACCACCGGAAGGAAATGGAGCAGCCGCCGT
TAGCCGGGGAGTCGTGATCGGCGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTGTTTGCTTAG
mRNA sequenceShow/hide mRNA sequence
GTGCAATTATAATTATGAGACCAAATGATTAAAAAAAAGGAATTTGGGAATCTCAAACATTATTGGGGAAAGACAAAGCAAGGCTGTCTTTGAAGCCACTCTGTTTTTTT
TTTCTCTTCTCCTTTGTGTTATATAATATGTTTGCTATTTGCTTTTCATTTCAAACTTCTCACTCAAAAAACTTTCTCTCTCTAAACCTTTTTTTCTCTCTCTAGTGAAA
ATGGGTTTTCATTTTGTGATGGTTTTGGCCTTGTTGGCTACTTCCTGCATGGCTCAGCCTCCCGCCGGAGCTCCGGCTCAGCCTCCCACCACCCCCGCCGTCCCGCCGCC
TGCCGCCACCCCACCACCTGCCGCCACCCCACCTCCGGCTACCCCACCTCCTGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCTCCGGCCACCCCACCAC
CAGCTACCCCACCGCCGGCCACCCCACCAACGGCCACCCCTCCGACGGCCACCCCACCGACGGCCACCCCACCGACGGCTACCCCACCTACCCAACCGCCGGCGACACCT
CCTACATCGAAGAACTCCTCGCCGCCGTCACCACCACCGGAAGGAAACGCCCCCACCCCTGGACCGAACCCGCCGCCGCCACCACCGGAAGGAAATGGAGCAGCCGCCGT
TAGCCGGGGAGTCGTGATCGGCGGTGCCGTGGCCGGAGCTTTCTTGGCAATGGTGTTTGCTTAGATGGAAATTGGGTTTTTGAAAAAGCGGGTGGGTCGGCCGGGCCGGC
GGTTCGATCGCCGGAGGGTGAGGTCCATTTTGGTGCTGGTTTAATTTAAATTGAAATTTCTGTAGTTGTTTTTAATTTCTTTGTATTTGTGTATGTTTTTGTGTGTGAGT
TTGATTATTATTGTTGATTCGGCGATTCATTATTTGTAAAATGTGTGGGACACGTGGCGCTATTGTAGATTAATCGGTCGTGTACATCGGATTTATGAATAAAAACATAC
ATTTCCATTC
Protein sequenceShow/hide protein sequence
MGFHFVMVLALLATSCMAQPPAGAPAQPPTTPAVPPPAATPPPAATPPPATPPPATPPPATPPPATPPPATPPPATPPPATPPTATPPTATPPTATPPTATPPTQPPATP
PTSKNSSPPSPPPEGNAPTPGPNPPPPPPEGNGAAAVSRGVVIGGAVAGAFLAMVFA