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Sed0027318 (gene) of Chayote v1 genome

Gene IDSed0027318
OrganismSechium edule (Chayote v1)
DescriptionIsocitrate dehydrogenase [NADP]
Genome locationLG01:26696776..26704923
RNA-Seq ExpressionSed0027318
SyntenySed0027318
Gene Ontology termsGO:0006102 - isocitrate metabolic process (biological process)
GO:0004450 - isocitrate dehydrogenase (NADP+) activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004790 - Isocitrate dehydrogenase NADP-dependent
IPR024084 - Isopropylmalate dehydrogenase-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579052.1 Cytosolic isocitrate dehydrogenase [NADP], partial [Cucurbita argyrosperma subsp. sororia]8.8e-2965.25Show/hide
Query:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY
        + EGQETQEIE         VALSMYNTDESIR FA ASM TAY+KKW LYLSTK T+LKKYDG+FKDIFQE YES+WKSK       YEH LID MV Y
Subjt:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY

Query:  ALKSEEGCLDMQELRWRC
        ALKSE G +      W C
Subjt:  ALKSEEGCLDMQELRWRC
XP_022938575.1 cytosolic isocitrate dehydrogenase [NADP] isoform X1 [Cucurbita moschata]8.8e-2965.25Show/hide
Query:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY
        + EGQETQEIE         VALSMYNTDESIR FA ASM TAY+KKW LYLSTK T+LKKYDG+FKDIFQE YES+WKSK       YEH LID MV Y
Subjt:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY

Query:  ALKSEEGCLDMQELRWRC
        ALKSE G +      W C
Subjt:  ALKSEEGCLDMQELRWRC
XP_022938576.1 cytosolic isocitrate dehydrogenase [NADP] isoform X2 [Cucurbita moschata]8.8e-2965.25Show/hide
Query:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY
        + EGQETQEIE         VALSMYNTDESIR FA ASM TAY+KKW LYLSTK T+LKKYDG+FKDIFQE YES+WKSK       YEH LID MV Y
Subjt:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY

Query:  ALKSEEGCLDMQELRWRC
        ALKSE G +      W C
Subjt:  ALKSEEGCLDMQELRWRC
XP_022993117.1 cytosolic isocitrate dehydrogenase [NADP] isoform X1 [Cucurbita maxima]6.7e-2965.25Show/hide
Query:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY
        + EGQETQEIE         VALSMYNTDESIR FA ASM TAY+KKW LYLSTK T+LKKYDG+FKDIFQE YES+WKSK       YEH LID MV Y
Subjt:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY

Query:  ALKSEEGCLDMQELRWRC
        ALKSE G +      W C
Subjt:  ALKSEEGCLDMQELRWRC
XP_022993118.1 cytosolic isocitrate dehydrogenase [NADP] isoform X2 [Cucurbita maxima]6.7e-2965.25Show/hide
Query:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY
        + EGQETQEIE         VALSMYNTDESIR FA ASM TAY+KKW LYLSTK T+LKKYDG+FKDIFQE YES+WKSK       YEH LID MV Y
Subjt:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY

Query:  ALKSEEGCLDMQELRWRC
        ALKSE G +      W C
Subjt:  ALKSEEGCLDMQELRWRC
TrEMBL top hitse value%identityAlignment
A0A6J1FJA0 Isocitrate dehydrogenase [NADP]4.3e-2965.25Show/hide
Query:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY
        + EGQETQEIE         VALSMYNTDESIR FA ASM TAY+KKW LYLSTK T+LKKYDG+FKDIFQE YES+WKSK       YEH LID MV Y
Subjt:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY

Query:  ALKSEEGCLDMQELRWRC
        ALKSE G +      W C
Subjt:  ALKSEEGCLDMQELRWRC
A0A6J1FK60 Isocitrate dehydrogenase [NADP]4.3e-2965.25Show/hide
Query:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY
        + EGQETQEIE         VALSMYNTDESIR FA ASM TAY+KKW LYLSTK T+LKKYDG+FKDIFQE YES+WKSK       YEH LID MV Y
Subjt:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY

Query:  ALKSEEGCLDMQELRWRC
        ALKSE G +      W C
Subjt:  ALKSEEGCLDMQELRWRC
A0A6J1JPW4 Isocitrate dehydrogenase [NADP]5.6e-2964.41Show/hide
Query:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY
        + EGQETQEIE         VALSMYNTDESIR FA+ASM TAY+KKW LYLSTK T+LKKYDG+FKDIFQE YES+WKSK       YEH LID MV Y
Subjt:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY

Query:  ALKSEEGCLDMQELRWRC
        ALKS+ G +      W C
Subjt:  ALKSEEGCLDMQELRWRC
A0A6J1JRV9 Isocitrate dehydrogenase [NADP]3.3e-2965.25Show/hide
Query:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY
        + EGQETQEIE         VALSMYNTDESIR FA ASM TAY+KKW LYLSTK T+LKKYDG+FKDIFQE YES+WKSK       YEH LID MV Y
Subjt:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY

Query:  ALKSEEGCLDMQELRWRC
        ALKSE G +      W C
Subjt:  ALKSEEGCLDMQELRWRC
A0A6J1JZB7 Isocitrate dehydrogenase [NADP]3.3e-2965.25Show/hide
Query:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY
        + EGQETQEIE         VALSMYNTDESIR FA ASM TAY+KKW LYLSTK T+LKKYDG+FKDIFQE YES+WKSK       YEH LID MV Y
Subjt:  LLEGQETQEIE---------VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEY

Query:  ALKSEEGCLDMQELRWRC
        ALKSE G +      W C
Subjt:  ALKSEEGCLDMQELRWRC
SwissProt top hitse value%identityAlignment
P50217 Isocitrate dehydrogenase [NADP]2.9e-2765.31Show/hide
Query:  VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELRWRC
        VALSMYNTDES+R FA+ASM  A++KKW LYLSTK T+LKKYDG+FKDIFQE YE+ WKSK       YEH LID MV YALKSE G +      W C
Subjt:  VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELRWRC
P50218 Isocitrate dehydrogenase [NADP]2.9e-2765.31Show/hide
Query:  VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELRWRC
        VALSMYNTDES+R FA+ASM  AY+KKW LYLSTK T+LKKYDG+FKDIFQE YE+ WKSK       YEH LID M  YALKSE G +      W C
Subjt:  VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELRWRC
Q06197 Isocitrate dehydrogenase [NADP]8.6e-2764.08Show/hide
Query:  TQEIEVALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELR
        T E  V+L+MYNTDESIR FA+ASM TA +KKW LYLSTK T+LKKYDG+FKDIFQE YE+ WKSK       YEH LID MV YALKSE G +      
Subjt:  TQEIEVALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELR

Query:  WRC
        W C
Subjt:  WRC
Q40345 Isocitrate dehydrogenase [NADP], chloroplastic (Fragment)1.9e-2664.08Show/hide
Query:  TQEIEVALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELR
        T E  VAL+MYNTDESIR FA+ASM  A +KKW LYLSTK T+LKKYDG+FKDIFQE YE+ WKSK       YEH LID MV YALKSE G +      
Subjt:  TQEIEVALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELR

Query:  WRC
        W C
Subjt:  WRC
Q9SRZ6 Cytosolic isocitrate dehydrogenase [NADP]1.0e-2765.05Show/hide
Query:  TQEIEVALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELR
        T E  VA++MYNTDESIR FA ASM TAY+KKW LYLSTK T+LKKYDG+FKDIFQE YE+ WKSK       YEH LID MV YALKSE G +      
Subjt:  TQEIEVALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELR

Query:  WRC
        W C
Subjt:  WRC
Arabidopsis top hitse value%identityAlignment
AT1G54340.1 isocitrate dehydrogenase3.0e-2763.27Show/hide
Query:  VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELRWRC
        VAL+MYNTDESIR FA++SM TAY+KKW LYLSTK T+LK YDG+FKDIFQE YE+ W+SK       YEH LID MV YA+KSE G +      W C
Subjt:  VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELRWRC
AT1G65930.1 cytosolic NADP+-dependent isocitrate dehydrogenase7.2e-2965.05Show/hide
Query:  TQEIEVALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELR
        T E  VA++MYNTDESIR FA ASM TAY+KKW LYLSTK T+LKKYDG+FKDIFQE YE+ WKSK       YEH LID MV YALKSE G +      
Subjt:  TQEIEVALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELR

Query:  WRC
        W C
Subjt:  WRC
AT5G14590.1 Isocitrate/isopropylmalate dehydrogenase family protein1.3e-2561.22Show/hide
Query:  VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELRWRC
        VAL+MYN DESIR FA++SM  A  KKW LYLSTK T+LKKYDG+FKDIFQE YE+ WK K       YEH LID MV YA+KSE G +      W C
Subjt:  VALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSK-------YEHHLIDSMVEYALKSEEGCLDMQELRWRC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGACGCTTCTAGAGGGACAAGAGACGCAAGAGATAGAGGTAGCGTTATCCATGTATAACACCGACGAGTCAATCCGCTTCTTCGCCCAGGCGTCAATGAAAACTGC
TTATAAGAAGAAATGGCAGCTTTACCTTAGCACAAAAACTACCGTTTTAAAGAAATATGATGGAAAATTCAAAGATATATTCCAAGAAGCCTACGAATCTCGTTGGAAAT
CCAAGTATGAACACCATCTCATTGATTCTATGGTGGAATATGCTCTTAAGAGTGAAGAAGGCTGTTTGGACATGCAAGAGCTACGATGGAGATGTCATGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATAGGAATCATCTTCAGGAGGTACTGTCTTCAGAGAGCCAATTCTTTGCAAAAATATTCCTCACCTTGTACCAGGTTGGACAAAGCCGATATGTATTAAGACATGGTTTT
GGCGATCAATACAGAGCTGCTGATACAGTTATCAAAGGACCTGGCAAATTGAAATTGATTTATGGTATTTGAATTCCCCAAATCATATCCCTTAAATTGCTGTAATTCTT
TGAAACTTTCCTAACATGTTGACGCTTCTAGAGGGACAAGAGACGCAAGAGATAGAGGTAGCGTTATCCATGTATAACACCGACGAGTCAATCCGCTTCTTCGCCCAGGC
GTCAATGAAAACTGCTTATAAGAAGAAATGGCAGCTTTACCTTAGCACAAAAACTACCGTTTTAAAGAAATATGATGGAAAATTCAAAGATATATTCCAAGAAGCCTACG
AATCTCGTTGGAAATCCAAGTATGAACACCATCTCATTGATTCTATGGTGGAATATGCTCTTAAGAGTGAAGAAGGCTGTTTGGACATGCAAGAGCTACGATGGAGATGT
CATGAGTGA
Protein sequenceShow/hide protein sequence
MLTLLEGQETQEIEVALSMYNTDESIRFFAQASMKTAYKKKWQLYLSTKTTVLKKYDGKFKDIFQEAYESRWKSKYEHHLIDSMVEYALKSEEGCLDMQELRWRCHE