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Sed0027321 (gene) of Chayote v1 genome

Gene IDSed0027321
OrganismSechium edule (Chayote v1)
Description30S ribosomal protein S7, chloroplastic
Genome locationLG03:40418651..40419102
RNA-Seq ExpressionSed0027321
SyntenySed0027321
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
InterPro domainsIPR000235 - Ribosomal protein S5/S7
IPR023798 - Ribosomal protein S7 domain
IPR036823 - Ribosomal protein S7 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG4185998.1 hypothetical protein ERO13_A08G015300v2 [Gossypium hirsutum]4.0e-1764.77Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVN------RILKHGKKNC----------SELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
        MSRRGTAEEK  K DPIYRN+LVN+LVN      R L    + C          SELVDAAKGSGDAI KKEETHRM EANR+FAHFR
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVN------RILKHGKKNC----------SELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

THU43687.1 hypothetical protein C4D60_Mb00t12220 [Musa balbisiana]3.6e-1874.32Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRI--LKHGKKNCSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
        MSRRGTAEEK  KSDPIYRN+LVNM + +    K+G +  SELVDAAKGSGDAI KKEETHRM EANR+FAHFR
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRI--LKHGKKNCSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

TYI12899.1 hypothetical protein ES332_A08G021100v1 [Gossypium tomentosum]6.8e-1763.64Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVN------RILKHGKKNC----------SELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
        MSRRGTAEEK  K DPIYRN+LVN+LVN      R L    + C          SELVDAAKGSGDA+ KKEETHRM EANR+FAHFR
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVN------RILKHGKKNC----------SELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

YP_009004087.1 ribosomal protein S7 [Cucumis hystrix]2.0e-1642.58Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------
        MSRRGTAEEKIEKSDPIYRN+LVNMLVNRILKHGKK+                                                               
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------

Query:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
                             SELVDAAKGSGDAI KKEETHRM EANR+FAHFR
Subjt:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

YP_010144974.1 ribosomal protein S7 [Exacum affine]2.4e-2280.52Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN-----CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
        MSRRG AEEK  KSDPI RN+LVNMLVNRILKHGKK+      SELVDAAKGSGDAI KKEETHRM EANR+FAHFR
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN-----CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

TrEMBL top hitse value%identityAlignment
A0A218KG96 30S ribosomal protein S7, chloroplastic9.6e-1742.58Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------
        MSRRGTAEEKIEKSDPIYRN+LVNMLVNRILKHGKK+                                                               
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------

Query:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
                             SELVDAAKGSGDAI KKEETHRM EANR+FAHFR
Subjt:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

A0A287QT24 Ribosomal protein S75.6e-1745.07Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------
        MSRRGTAEEK  KSDPIYRN+LVNMLVNRILKHGKK+                                                               
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------

Query:  -------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
                SELVDAAKGSGDAI KKEETHRM EANR+FAHFR
Subjt:  -------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

A0A4S8I6Z2 Ribosomal_S7 domain-containing protein1.7e-1874.32Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRI--LKHGKKNCSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
        MSRRGTAEEK  KSDPIYRN+LVNM + +    K+G +  SELVDAAKGSGDAI KKEETHRM EANR+FAHFR
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRI--LKHGKKNCSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

A0A5D2P9S4 Ribosomal_S7 domain-containing protein3.3e-1763.64Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVN------RILKHGKKNC----------SELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
        MSRRGTAEEK  K DPIYRN+LVN+LVN      R L    + C          SELVDAAKGSGDA+ KKEETHRM EANR+FAHFR
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVN------RILKHGKKNC----------SELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

A0A7T7FMC4 Ribosomal protein S71.2e-2280.52Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN-----CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
        MSRRG AEEK  KSDPI RN+LVNMLVNRILKHGKK+      SELVDAAKGSGDAI KKEETHRM EANR+FAHFR
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN-----CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

SwissProt top hitse value%identityAlignment
A4QJG0 30S ribosomal protein S7, chloroplastic4.9e-1841.29Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------
        MSRRGTAEEK  KSDPIYRN+LVNMLVNRILKHGKK+                                                               
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------

Query:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
                             SELVDAAKGSGDAI KKEETHRM EANR+FAHFR
Subjt:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

A4QJP4 30S ribosomal protein S7, chloroplastic4.9e-1841.29Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------
        MSRRGTAEEK  KSDPIYRN+LVNMLVNRILKHGKK+                                                               
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------

Query:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
                             SELVDAAKGSGDAI KKEETHRM EANR+FAHFR
Subjt:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

A4QK64 30S ribosomal protein S7, chloroplastic4.9e-1841.29Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------
        MSRRGTAEEK  KSDPIYRN+LVNMLVNRILKHGKK+                                                               
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------

Query:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
                             SELVDAAKGSGDAI KKEETHRM EANR+FAHFR
Subjt:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

Q4VZK9 30S ribosomal protein S7, chloroplastic2.6e-1942.58Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------
        MSRRGTAEEKIEKSDPIYRN+LVNMLVNRILKHGKK+                                                               
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------

Query:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
                             SELVDAAKGSGDAI KKEETHRM EANR+FAHFR
Subjt:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

Q67ID1 30S ribosomal protein S7, chloroplastic4.9e-1841.29Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------
        MSRRGTAEEK  KSDPIYRN+LVNMLVNRILKHGKK+                                                               
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------

Query:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
                             SELVDAAKGSGDAI KKEETHRM EANR+FAHFR
Subjt:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

Arabidopsis top hitse value%identityAlignment
ATCG00900.1 Ribosomal protein S7p/S5e family protein3.5e-1941.29Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------
        MSRRGTAEEK  KSDPIYRN+LVNMLVNRILKHGKK+                                                               
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------

Query:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
                             SELVDAAKGSGDAI KKEETHRM EANR+FAHFR
Subjt:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR

ATCG01240.1 ribosomal protein S73.5e-1941.29Show/hide
Query:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------
        MSRRGTAEEK  KSDPIYRN+LVNMLVNRILKHGKK+                                                               
Subjt:  MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKN---------------------------------------------------------------

Query:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR
                             SELVDAAKGSGDAI KKEETHRM EANR+FAHFR
Subjt:  --------------------CSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACGTCGAGGTACTGCAGAAGAAAAAATTGAAAAATCCGATCCAATTTATCGTAATAAATTAGTTAACATGTTGGTTAACCGTATTCTAAAACACGGAAAAAAAAA
TTGTTCTGAATTAGTGGATGCTGCCAAAGGGAGTGGTGATGCCATATGCAAAAAGGAAGAGACTCATAGAATGACAGAGGCAAATAGATCTTTTGCACATTTTCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACGTCGAGGTACTGCAGAAGAAAAAATTGAAAAATCCGATCCAATTTATCGTAATAAATTAGTTAACATGTTGGTTAACCGTATTCTAAAACACGGAAAAAAAAA
TTGTTCTGAATTAGTGGATGCTGCCAAAGGGAGTGGTGATGCCATATGCAAAAAGGAAGAGACTCATAGAATGACAGAGGCAAATAGATCTTTTGCACATTTTCGTTAA
Protein sequenceShow/hide protein sequence
MSRRGTAEEKIEKSDPIYRNKLVNMLVNRILKHGKKNCSELVDAAKGSGDAICKKEETHRMTEANRSFAHFR