CuGenDBv2

Gene ID	Sed0027344
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L30
Genome location	LG12:27367373..27370162
RNA-Seq Expression	Sed0027344
Synteny	Sed0027344
Gene Ontology terms	GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000231 - Ribosomal protein L30e IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 IPR022991 - Ribosomal protein L30e, conserved site IPR029064 - 50S ribosomal protein L30e-like IPR039109 - Ribosomal protein L30/YlxQ

Homology

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GenBank top hits

e value

%identity

Alignment

PON59180.1 Ribosomal protein [Parasponia andersonii]

5.7e-55

97.3

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Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLK+LRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGD
        DSDIIK+MPGD
Subjt:  DSDIIKNMPGD

XP_004251199.1 60S ribosomal protein L30 [Solanum lycopersicum]

4.4e-55

97.3

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Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGD
        DSDIIK+MPGD
Subjt:  DSDIIKNMPGD

XP_022960585.1 60S ribosomal protein L30-like [Cucurbita moschata]

4.4e-55

96.43

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Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGDS
        DSDIIK++PG+S
Subjt:  DSDIIKNMPGDS

XP_030458554.1 60S ribosomal protein L30 [Syzygium oleosum]

5.7e-55

96.4

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Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKL+IIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGD
        DSDIIK+MPGD
Subjt:  DSDIIKNMPGD

XP_038878626.1 60S ribosomal protein L30 [Benincasa hispida]

2.0e-55

97.32

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Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGDS
        DSDIIK+MPG+S
Subjt:  DSDIIKNMPGDS

TrEMBL top hits

e value

%identity

Alignment

A0A1U8ENE7 60S ribosomal protein L30

2.1e-55

97.3

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Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGD
        DSDIIK+MPGD
Subjt:  DSDIIKNMPGD

A0A2P5CDP9 Ribosomal protein

2.8e-55

97.3

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Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLK+LRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGD
        DSDIIK+MPGD
Subjt:  DSDIIKNMPGD

A0A3Q7J0N1 Ribosomal_L7Ae domain-containing protein

2.1e-55

97.3

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Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGD
        DSDIIK+MPGD
Subjt:  DSDIIKNMPGD

A0A6J1H9H7 60S ribosomal protein L30-like

2.1e-55

96.43

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Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGDS
        DSDIIK++PG+S
Subjt:  DSDIIKNMPGDS

A0A6J1JJ11 60S ribosomal protein L30-like

2.1e-55

96.43

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGDS
        DSDIIK++PG+S
Subjt:  DSDIIKNMPGDS

SwissProt top hits

e value

%identity

Alignment

O48558 60S ribosomal protein L30

2.2e-49

82.88

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Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVA KKTKK+ ++INN+L LVMKSGK+TLGYKTVL+TLRNSK KL+IIANNCPPLRKSEIEYYAMLAKV VHH++G+NVDLGTACGKY+RVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGD
        DSDIIK  PG+
Subjt:  DSDIIKNMPGD

O49884 60S ribosomal protein L30

2.4e-56

93.69

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Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLK+LR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGD
        DSDIIK +PGD
Subjt:  DSDIIKNMPGD

Q8VZ19 60S ribosomal protein L30-2

5.8e-50

82.88

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Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MV  KKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGD
        DSDIIK++PGD
Subjt:  DSDIIKNMPGD

Q9C8F7 Putative 60S ribosomal protein L30-1

2.0e-50

83.78

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Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGD
        DSDIIK++PGD
Subjt:  DSDIIKNMPGD

Q9M5M6 60S ribosomal protein L30

5.0e-54

90.99

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESIN+RLALVMKSGKFTLGYKTVL++LR++KGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RVCCLSIID G
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGD
        DSDIIK++PGD
Subjt:  DSDIIKNMPGD

Arabidopsis top hits

e value

%identity

Alignment

AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

1.4e-51

83.78

Show/hide

Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGD
        DSDIIK++PGD
Subjt:  DSDIIKNMPGD

AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

4.1e-51

82.88

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Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MV  KKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGD
        DSDIIK++PGD
Subjt:  DSDIIKNMPGD

AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

2.7e-50

81.98

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Query:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVA KK KK+HE IN+RLALVMKSGK+TLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEIEYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKNMPGD
        DSDIIK +PGD
Subjt:  DSDIIKNMPGD

Sequences

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CDS sequence

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ATGGTTGCGGCGAAGAAGACGAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTCGTCATGAAGAGCGGCAAATTCACCTTGGGATACAAAACAGTTCTCAAGAC
CTTGAGGAATTCTAAAGGTAAGCTGATCATCATTGCCAACAATTGCCCACCACTTCGAAAGTCCGAGATCGAGTATTATGCTATGTTGGCAAAGGTTGGAGTTCACCATT
ACAATGGAAGCAATGTCGATCTTGGAACCGCTTGTGGCAAGTATTACAGAGTATGTTGCCTCAGCATTATCGATCCCGGTGATTCCGATATCATCAAGAACATGCCTGGA
GACAGTTAG

mRNA sequence

Show/hide mRNA sequence

GCAAAGCTAAAAAAATAATTCAGCTTACCCTAAAGCACCGGGGCTCTGTATATAAGTATGCATAAATTAGGGTTTTGGTTGTATTTGTATCCCATAGTCGGCGTCGACGA
GCAGCAGCAGCTTTCTCAAATCTTCGATCATGGTTGCGGCGAAGAAGACGAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTCGTCATGAAGAGCGGCAAATTC
ACCTTGGGATACAAAACAGTTCTCAAGACCTTGAGGAATTCTAAAGGTAAGCTGATCATCATTGCCAACAATTGCCCACCACTTCGAAAGTCCGAGATCGAGTATTATGC
TATGTTGGCAAAGGTTGGAGTTCACCATTACAATGGAAGCAATGTCGATCTTGGAACCGCTTGTGGCAAGTATTACAGAGTATGTTGCCTCAGCATTATCGATCCCGGTG
ATTCCGATATCATCAAGAACATGCCTGGAGACAGTTAGGTTGCAACTTCCTCTCCGATTATAGATTTTTGTTTCAGAGTTTCTTTTTAATCCGTTTAATTTTGGGTTGGT
AGTGATGTTCGCTTGTGAGGCATGTTATTATTTATCGAATTGCAGTATAAACTCTGTGTTCGCCCGTTCTTATTCCAGATATTACTTTGATGTTCTACATTACCCACCTT
AACGGATTCCGACAAGCACGATGCCCCAATTTTTTTTGTATTATTTGCATTAATTGTTCTAGTTCAAGGGGATATTTTGATGTGTGCAATGCAATGAAGTGTTAACTCAC
CTAGGGTATGCTTGGGGGAGGAAGGTGAATGAGAACGTGGGGGAAGAATAGGATACGAGAATGATTATGGGGAC

Protein sequence

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MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPG
DS

Sed0027344 (gene) of Chayote v1 genome