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Sed0027387 (gene) of Chayote v1 genome

Gene IDSed0027387
OrganismSechium edule (Chayote v1)
Descriptionhistone deacetylase HDT1-like
Genome locationLG01:56415004..56415391
RNA-Seq ExpressionSed0027387
SyntenySed0027387
Gene Ontology termsGO:0010162 - seed dormancy process (biological process)
GO:0045892 - negative regulation of transcription, DNA-templated (biological process)
GO:0005730 - nucleolus (cellular component)
InterPro domainsIPR041232 - Nucleoplasmin-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008458624.1 PREDICTED: histone deacetylase HDT1-like [Cucumis melo]1.6e-2370.93Show/hide
Query:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQ
        V+P D  Y+HLSQATL    + KAND  VT+FLK+DDQKLVLG LS +KFPQ+SFDLVFEKEFELSHNGK  SIYC GY  P EDQ
Subjt:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQ

XP_022140604.1 histone deacetylase HDT1-like [Momordica charantia]1.9e-2472.83Show/hide
Query:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQ-YNDYL
        VKP DQKYLHLSQATL    + KAN E VT+FLK+ DQKLVLG LS EKFPQLSFDLVFEKEFELSHNGK  SIYC GY    EDQ + +YL
Subjt:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQ-YNDYL

XP_022958434.1 histone deacetylase HDT1-like [Cucurbita moschata]1.3e-2370.79Show/hide
Query:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQYND
        VKP DQKYLHLSQATL    + K+  E VT+FLK+D+QKLVLG LS EKFPQLSFDLVFEKEFELSHNGK  SIYC GY    EDQ ++
Subjt:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQYND

XP_023522030.1 histone deacetylase HDT1-like [Cucurbita pepo subsp. pepo]1.3e-2370.79Show/hide
Query:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQYND
        VKP DQKYLHLSQATL    + K+  E VT+FLK+D+QKLVLG LS EKFPQLSFDLVFEKEFELSHNGK  SIYC GY    EDQ ++
Subjt:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQYND

XP_023533832.1 histone deacetylase HDT1-like [Cucurbita pepo subsp. pepo]1.3e-2370.79Show/hide
Query:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQYND
        VKP DQKYLHLSQATL    + K+  E VT+FLK+D+QKLVLG LS EKFPQLSFDLVFEKEFELSHNGK  SIYC GY    EDQ ++
Subjt:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQYND

TrEMBL top hitse value%identityAlignment
A0A5A7SSE8 Histone deacetylase HDT1-like7.9e-2470.93Show/hide
Query:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQ
        V+P D  Y+HLSQATL    + KAND  VT+FLK+DDQKLVLG LS +KFPQ+SFDLVFEKEFELSHNGK  SIYC GY  P EDQ
Subjt:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQ

A0A6J1CG52 histone deacetylase HDT1-like9.3e-2572.83Show/hide
Query:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQ-YNDYL
        VKP DQKYLHLSQATL    + KAN E VT+FLK+ DQKLVLG LS EKFPQLSFDLVFEKEFELSHNGK  SIYC GY    EDQ + +YL
Subjt:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQ-YNDYL

A0A6J1FXQ5 histone deacetylase HDT1-like7.9e-2470.79Show/hide
Query:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQYND
        V+P DQKYLHLSQATL    + KAN E VT+F+K+ DQKLVLG LS EKFPQLSFDLVFEKEFELSHNGK  SIYC GY    EDQ ++
Subjt:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQYND

A0A6J1H533 histone deacetylase HDT1-like6.1e-2470.79Show/hide
Query:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQYND
        VKP DQKYLHLSQATL    + K+  E VT+FLK+D+QKLVLG LS EKFPQLSFDLVFEKEFELSHNGK  SIYC GY    EDQ ++
Subjt:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQYND

A0A6J1JAV6 histone deacetylase HDT1-like7.9e-2470.79Show/hide
Query:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQYND
        V+P DQKYLHLSQATL    + KAN E VT+F+K+ DQKLVLG LS EKFPQLSFDLVFEKEFELSHNGK  SIYC GY    EDQ ++
Subjt:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQYND

SwissProt top hitse value%identityAlignment
O24591 Histone deacetylase HDT16.7e-1249.3Show/hide
Query:  LHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGY
        LHLSQA L    + K +D    +++K+DDQKL +G LS +K P + FDL+F+KEFELSH  K  S++  GY
Subjt:  LHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGY

Q56WH4 Histone deacetylase HDT29.3e-1446.51Show/hide
Query:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQ
        V P +   +H+SQA+L   D    + E V L + V   KLV+G LS++KFPQ+SFDLVF+KEFELSH+G   +++  GY  P+ +Q
Subjt:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQ

Q6V9I6 Histone deacetylase HDT16.5e-1550Show/hide
Query:  VKPVDQKYLHLSQATL-EIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGY-----WIPDEDQYNDY
        V+P D   LHLSQA+L E+K   K   E V L + +D +KLVLG L+ EK PQ  FDLVF+++FELSHN K  S+Y FGY     +  +ED  +DY
Subjt:  VKPVDQKYLHLSQATL-EIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGY-----WIPDEDQYNDY

Q9M4U4 Histone deacetylase HDT36.7e-1249.3Show/hide
Query:  LHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGY
        LHLSQA L    + K +D    +++K+DDQKL +G LS +K P + FDL+F+KEFELSH  K  S++  GY
Subjt:  LHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGY

Q9M4U5 Histone deacetylase HDT23.0e-1250.7Show/hide
Query:  LHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGY
        LH+SQA L    + K +D    +++KVDD+KL +G LS +K+PQ+ FDLVF KEFELSH  K  S++  GY
Subjt:  LHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGY

Arabidopsis top hitse value%identityAlignment
AT3G44750.1 histone deacetylase 32.4e-1248.81Show/hide
Query:  VKPVDQKYLHLSQATL-EIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPD
        V P +   +H+SQA+L E K++     E+V L +KV +Q LVLG LS E  PQL  DLVF+KEFELSH     S+Y  GY  P+
Subjt:  VKPVDQKYLHLSQATL-EIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPD

AT3G44750.2 histone deacetylase 32.4e-1248.81Show/hide
Query:  VKPVDQKYLHLSQATL-EIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPD
        V P +   +H+SQA+L E K++     E+V L +KV +Q LVLG LS E  PQL  DLVF+KEFELSH     S+Y  GY  P+
Subjt:  VKPVDQKYLHLSQATL-EIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPD

AT5G03740.1 histone deacetylase 2C1.1e-0940Show/hide
Query:  KYLHLSQATLEIKDQGKAN-DEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDED
        + +H+SQ  L    + K N  E + L++ V   KL++G LS EKFPQLS ++V E+ F LSH  K+ S++  GY +   D
Subjt:  KYLHLSQATLEIKDQGKAN-DEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDED

AT5G22650.1 histone deacetylase 2B6.6e-1546.51Show/hide
Query:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQ
        V P +   +H+SQA+L   D    + E V L + V   KLV+G LS++KFPQ+SFDLVF+KEFELSH+G   +++  GY  P+ +Q
Subjt:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQ

AT5G22650.2 histone deacetylase 2B6.6e-1546.51Show/hide
Query:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQ
        V P +   +H+SQA+L   D    + E V L + V   KLV+G LS++KFPQ+SFDLVF+KEFELSH+G   +++  GY  P+ +Q
Subjt:  VKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGCCCGTAGATCAGAAATATCTGCATCTATCACAGGCTACACTTGAAATTAAGGATCAGGGAAAGGCAAATGATGAGTGGGTGACTTTGTTTTTGAAGGTTGA
TGATCAGAAACTTGTTTTGGGAAATCTTAGCGAAGAGAAATTCCCACAACTATCATTCGATCTCGTGTTCGAGAAGGAATTCGAGCTCTCCCACAACGGCAAGGATCGAA
GTATTTACTGTTTTGGATACTGGATTCCGGATGAAGATCAATACAATGATTATCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAGCCCGTAGATCAGAAATATCTGCATCTATCACAGGCTACACTTGAAATTAAGGATCAGGGAAAGGCAAATGATGAGTGGGTGACTTTGTTTTTGAAGGTTGA
TGATCAGAAACTTGTTTTGGGAAATCTTAGCGAAGAGAAATTCCCACAACTATCATTCGATCTCGTGTTCGAGAAGGAATTCGAGCTCTCCCACAACGGCAAGGATCGAA
GTATTTACTGTTTTGGATACTGGATTCCGGATGAAGATCAATACAATGATTATCTTTAA
Protein sequenceShow/hide protein sequence
MVKPVDQKYLHLSQATLEIKDQGKANDEWVTLFLKVDDQKLVLGNLSEEKFPQLSFDLVFEKEFELSHNGKDRSIYCFGYWIPDEDQYNDYL