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Sed0027394 (gene) of Chayote v1 genome

Gene IDSed0027394
OrganismSechium edule (Chayote v1)
DescriptionRibonuclease P
Genome locationLG07:42971275..42973947
RNA-Seq ExpressionSed0027394
SyntenySed0027394
Gene Ontology termsGO:0001682 - tRNA 5'-leader removal (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030677 - ribonuclease P complex (cellular component)
GO:0004526 - ribonuclease P activity (molecular function)
GO:0033204 - ribonuclease P RNA binding (molecular function)
InterPro domainsIPR002759 - RNase P subunit Pop5/Rpp14/Rnp2-like
IPR038085 - RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139703.1 probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus]6.2e-6885.06Show/hide
Query:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN
        MV FKNRY+V EV+LDPNKDL   DPIIITQYNVSKAIKDSILLNFGECGFAS+LGSF V++VNPITK+CI+RASREDYQNVWAAITMVR+ISNCPVVFN
Subjt:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN

Query:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH
        LLDLSGNTRACKNTALRLEGLKFEQYKL VG +L D+V LQMQN LEKI TLE+
Subjt:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH

XP_022932062.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita moschata]1.1e-6784.42Show/hide
Query:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN
        MV FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKDSILLNFGECGFASSLGSF VR+VNPITKLCI+RASREDYQNVWAAITMVR+ISNCPVVFN
Subjt:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN

Query:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH
        LLDL+GN+RACKNTALRL+ LKFEQYKL VGP +SD V LQMQN LEKI +L++
Subjt:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH

XP_022972913.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima]1.8e-6783.77Show/hide
Query:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN
        MV FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKDSILLNFGECGFASSLGSF V++VNPITKLCI+RASREDYQNVWAAITMVR+ISNCPVVFN
Subjt:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN

Query:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH
        LLDL+GN+RACKNTALR++ LKFEQYKL VGP +SD V LQMQN LEKI TL++
Subjt:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH

XP_023524475.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita pepo subsp. pepo]6.9e-6783.77Show/hide
Query:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN
        MV FKNRYLV EV LDPNKD+A  DPIIITQYNVSKAIKDSILLNFGECGFASSLGSF VR+VNPITKLCI+RASREDYQNVWAAITMVR+ISNCPVVFN
Subjt:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN

Query:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH
        LLDL+GN+RACKNTALR++ LKFEQYKL VGP++SD V LQM N LEKI TL++
Subjt:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH

XP_038899949.1 probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida]6.2e-6886.93Show/hide
Query:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN
        MV FKNRY+VLEV+LDPNKDL   DPIIITQYNVSKAIKDSILLNFGECGFASSLGSF V++VNPITKLCI+RASREDYQNVWAAITMVRTISNCPVVFN
Subjt:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN

Query:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLE
        LLDLSGNTRACKNTALRL+ LKFEQYKL VG  L D+V LQMQN LEKI TLE
Subjt:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLE

TrEMBL top hitse value%identityAlignment
A0A1S3CEI9 Ribonuclease P2.8e-6683.12Show/hide
Query:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN
        MV FKNRY+V EV+LDPNK+L   DPIIITQYNVSKAIKDSILLNFGECGFAS+LGSF V++VNPITKLCI+RASREDYQNVWAAITMVR+ISNCPVVFN
Subjt:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN

Query:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH
        LLDLSGNTRACKNTALRL+GLKFEQYKL VG  L D+VK+ MQN LEKI  LE+
Subjt:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH

A0A5D3CDD4 Ribonuclease P7.4e-6783.77Show/hide
Query:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN
        MV FKNRY+V EV+LDPNK+L   DPIIITQYNVSKAIKDSILLNFGECGFAS+LGSF V++VNPITKLCI+RASREDYQNVWAAITMVR+ISNCPVVFN
Subjt:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN

Query:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH
        LLDLSGNTRACKNTALRL+GLKFEQYKL VG  L D+VK+QMQN LEKI  LE+
Subjt:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH

A0A6J1CLH1 Ribonuclease P2.2e-6381.46Show/hide
Query:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN
        MV ++NRYL+LEVILDP KD A  D IIITQYN+SKAIKDSILLNFGECGFAS+LGSF VR+VNPITKLCI+R S+EDYQ VWAAITMVRTI NCPV+FN
Subjt:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN

Query:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITT
        LLDL+GNTRACKNTALR E LKFEQYKL VG  LSDDV LQMQN LEKI T
Subjt:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITT

A0A6J1EVL4 Ribonuclease P5.1e-6884.42Show/hide
Query:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN
        MV FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKDSILLNFGECGFASSLGSF VR+VNPITKLCI+RASREDYQNVWAAITMVR+ISNCPVVFN
Subjt:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN

Query:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH
        LLDL+GN+RACKNTALRL+ LKFEQYKL VGP +SD V LQMQN LEKI +L++
Subjt:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH

A0A6J1IBH7 Ribonuclease P8.8e-6883.77Show/hide
Query:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN
        MV FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKDSILLNFGECGFASSLGSF V++VNPITKLCI+RASREDYQNVWAAITMVR+ISNCPVVFN
Subjt:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN

Query:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH
        LLDL+GN+RACKNTALR++ LKFEQYKL VGP +SD V LQMQN LEKI TL++
Subjt:  LLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH

SwissProt top hitse value%identityAlignment
Q54EP3 Probable ribonuclease P/MRP protein subunit POP58.6e-1228.57Show/hide
Query:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN
        MV  KNRYL+ EVI   N+   +     + Q+ +S  +K+ +    GE  + +   +  + +VNP T + I+R S E Y+++W A+T++ +    P+ F 
Subjt:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFN

Query:  LLDLSGNTRACKNTALRLEGLKFEQY
        ++ + G+ R C+  A+++ G +   Y
Subjt:  LLDLSGNTRACKNTALRLEGLKFEQY

Q6AWV1 Probable ribonuclease P/MRP protein subunit POP52.0e-4861.94Show/hide
Query:  MVGFKNRYLVLEVILDPNKD-LAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVF
        MVGFKNRY+++EV LDP+KD L +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSF V++VNPITKLCIVR+SRE+++ VW AIT+V++I NCPV+ 
Subjt:  MVGFKNRYLVLEVILDPNKD-LAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVF

Query:  NLLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH
        NLLD+SG  RAC++TAL+ +  KFEQ        LS++   QM  SLEKI  LE+
Subjt:  NLLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH

Q969H6 Ribonuclease P/MRP protein subunit POP51.2e-0831.03Show/hide
Query:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISN----CP
        MV FK+RYL+ E++ D  +     D  ++     S  ++D+I    G  G A+    F VR++N  T + ++R  +E YQ VW+A+  +  + N     P
Subjt:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISN----CP

Query:  VVFNLLDLSGNTRACK
          FN L + G  R C+
Subjt:  VVFNLLDLSGNTRACK

Q9DB28 Ribonuclease P/MRP protein subunit POP53.7e-0728.45Show/hide
Query:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISN----CP
        MV FK+RYL+ E++ +  +     D  ++        ++D+I    G  G A+    F VR++N  T + ++R  ++ YQ VW+A+  +  + N     P
Subjt:  MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISN----CP

Query:  VVFNLLDLSGNTRACK
          FN L + G  R C+
Subjt:  VVFNLLDLSGNTRACK

Q9UU90 Ribonuclease P/MRP protein subunit POP57.3e-1130.83Show/hide
Query:  MVGFKNRYLVLEVILDPNKDLAKADPI----IITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCP
        MV FK+RYL+ EV+    K+      I     IT  ++SK I+  +  NFG+ G      S  V++ +P T   I+R SR+ ++  WAA+ ++R +   P
Subjt:  MVGFKNRYLVLEVILDPNKDLAKADPI----IITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCP

Query:  VVFNLLDLSGNTRACKNTAL
        V+  ++ +SG  +  +  A+
Subjt:  VVFNLLDLSGNTRACKNTAL

Arabidopsis top hitse value%identityAlignment
AT1G04635.1 ribonuclease P family protein / Rpp14 family protein1.4e-4961.94Show/hide
Query:  MVGFKNRYLVLEVILDPNKD-LAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVF
        MVGFKNRY+++EV LDP+KD L +  PII+TQ+N+SKAIKDSIL+NFGECG  SSLGSF V++VNPITKLCIVR+SRE+++ VW AIT+V++I NCPV+ 
Subjt:  MVGFKNRYLVLEVILDPNKD-LAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVF

Query:  NLLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH
        NLLD+SG  RAC++TAL+ +  KFEQ        LS++   QM  SLEKI  LE+
Subjt:  NLLDLSGNTRACKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGGGTTTAAAAACCGATACTTGGTGCTTGAAGTTATCTTGGATCCCAATAAAGACCTTGCAAAAGCTGATCCTATTATCATTACCCAATATAATGTTTCAAAAGC
AATCAAGGACAGTATTCTTCTCAACTTTGGGGAGTGTGGTTTTGCTTCCTCACTTGGATCTTTTCATGTTAGGCATGTAAATCCGATCACCAAGTTGTGTATCGTTAGGG
CCTCGAGAGAGGACTATCAAAATGTATGGGCTGCAATTACCATGGTGAGGACTATCAGCAATTGCCCTGTTGTATTTAATCTACTCGACCTAAGTGGAAATACGAGAGCT
TGCAAGAACACCGCATTGAGGCTCGAAGGATTGAAGTTTGAGCAATACAAGCTTACGGTTGGACCTCATCTCTCTGATGATGTCAAACTGCAAATGCAAAACTCTCTTGA
GAAGATTACAACTTTAGAACACTGA
mRNA sequenceShow/hide mRNA sequence
AAAAGATAAACAAAAAGCCCTAGCTTCTCTGCACAGCCGCCCCTTTCTCACGCATCTCTTTCTCAGCCTCTTCATCTCTTTTTCTGCTGCTCTGTTTTTTTTTGGGCAAA
ATCTGTGTATTCAAAGAATTGTTTGAAGCCTATTTTCTCTGCTATTCATCTTCGGCGACTCTTAGATGGTGATCATCTTTCATCTCTTCCTGTGGCTGTGCATATTTTGT
TAAAGGATCAAAGGAATGGTGGGGTTTAAAAACCGATACTTGGTGCTTGAAGTTATCTTGGATCCCAATAAAGACCTTGCAAAAGCTGATCCTATTATCATTACCCAATA
TAATGTTTCAAAAGCAATCAAGGACAGTATTCTTCTCAACTTTGGGGAGTGTGGTTTTGCTTCCTCACTTGGATCTTTTCATGTTAGGCATGTAAATCCGATCACCAAGT
TGTGTATCGTTAGGGCCTCGAGAGAGGACTATCAAAATGTATGGGCTGCAATTACCATGGTGAGGACTATCAGCAATTGCCCTGTTGTATTTAATCTACTCGACCTAAGT
GGAAATACGAGAGCTTGCAAGAACACCGCATTGAGGCTCGAAGGATTGAAGTTTGAGCAATACAAGCTTACGGTTGGACCTCATCTCTCTGATGATGTCAAACTGCAAAT
GCAAAACTCTCTTGAGAAGATTACAACTTTAGAACACTGATTGATTCAATTGTATTGAATATTCCAGTACATTTCCATTGCCTGAATTACTTAATATTTTATATCAATTC
ACTAAAGTCCTTGTTAATACTCGTCTTTTGTGACCGAATAGGTCGGTGACGCATTTGGTTATCTTGTTTGGTGTTAATTTATTTCAACTTCACGGTTTCGAGGCTGAGCT
CGAAATTTGGCATTTGACTCTCATATTATTTAAGAGCAGTTATGCCCTCTATGTAGGGTTTGTTGATCCTCTCTCCTTAATTTATACTAAAAAAAAGTACTCGTCTT
Protein sequenceShow/hide protein sequence
MVGFKNRYLVLEVILDPNKDLAKADPIIITQYNVSKAIKDSILLNFGECGFASSLGSFHVRHVNPITKLCIVRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNTRA
CKNTALRLEGLKFEQYKLTVGPHLSDDVKLQMQNSLEKITTLEH