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Sed0027480 (gene) of Chayote v1 genome

Gene IDSed0027480
OrganismSechium edule (Chayote v1)
DescriptionRibulose-bisphosphate carboxylase large chain
Genome locationLG07:4531693..4531881
RNA-Seq ExpressionSed0027480
SyntenySed0027480
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV84984.1 hypothetical protein CFOL_v3_28424 [Cephalotus follicularis]1.7e-0863.79Show/hide
Query:  MATNHGVGVQIPHRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLLSKWNGLIFFF
        M+ N GVGV+I   PQPAKKG   P GGRKI+  I    LWNLGVGLLSKWNG+ F F
Subjt:  MATNHGVGVQIPHRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLLSKWNGLIFFF
THG14067.1 hypothetical protein TEA_017317 [Camellia sinensis var. sinensis]5.0e-0878.05Show/hide
Query:  GVQIPHRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLL
        GV+IP RPQPA+KGRTFPSGG+KIMIGIAD KL NLG   L
Subjt:  GVQIPHRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLL
VVW84856.1 unnamed protein product, partial [Nymphaea colorata]9.4e-0767.35Show/hide
Query:  HRPQPAKKGRTFP----SGGRKIMIGIADPKLWNLGVGLLSKWNGLIFF
        +RPQ   +GR  P    SGGRKIMIGIAD KLWN GVGLLSKWNGL  +
Subjt:  HRPQPAKKGRTFP----SGGRKIMIGIADPKLWNLGVGLLSKWNGLIFF
VVW88655.1 unnamed protein product, partial [Nymphaea colorata]6.9e-1061.29Show/hide
Query:  MATNHGVGVQIPHRPQPAKKGR-----TFPSGGRKIMIGIADPKLWNLGVGLLSKWNGLIFF
        +ATNHGVG   P  P    KG         SGGRKIMIGIAD KLWN GVGLLSKWNGL  +
Subjt:  MATNHGVGVQIPHRPQPAKKGR-----TFPSGGRKIMIGIADPKLWNLGVGLLSKWNGLIFF
VVW89832.1 unnamed protein product, partial [Nymphaea colorata]7.2e-0771.74Show/hide
Query:  HRPQPAKKGRTFP----SGGRKIMIGIADPKLWNLGVGLLSKWNGL
        +RPQ   +GR  P    SGGRKIMIGIAD KLWN GVGLLSKWNGL
Subjt:  HRPQPAKKGRTFP----SGGRKIMIGIADPKLWNLGVGLLSKWNGL
TrEMBL top hitse value%identityAlignment
A0A1Q3CXN5 Uncharacterized protein8.3e-0963.79Show/hide
Query:  MATNHGVGVQIPHRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLLSKWNGLIFFF
        M+ N GVGV+I   PQPAKKG   P GGRKI+  I    LWNLGVGLLSKWNG+ F F
Subjt:  MATNHGVGVQIPHRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLLSKWNGLIFFF
A0A4V3WNW4 Protein TIC 2142.4e-0878.05Show/hide
Query:  GVQIPHRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLL
        GV+IP RPQPA+KGRTFPSGG+KIMIGIAD KL NLG   L
Subjt:  GVQIPHRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLL
A0A5K1HAV1 Uncharacterized protein (Fragment)4.5e-0767.35Show/hide
Query:  HRPQPAKKGRTFP----SGGRKIMIGIADPKLWNLGVGLLSKWNGLIFF
        +RPQ   +GR  P    SGGRKIMIGIAD KLWN GVGLLSKWNGL  +
Subjt:  HRPQPAKKGRTFP----SGGRKIMIGIADPKLWNLGVGLLSKWNGLIFF
A0A5K1HQI3 Uncharacterized protein (Fragment)3.5e-0771.74Show/hide
Query:  HRPQPAKKGRTFP----SGGRKIMIGIADPKLWNLGVGLLSKWNGL
        +RPQ   +GR  P    SGGRKIMIGIAD KLWN GVGLLSKWNGL
Subjt:  HRPQPAKKGRTFP----SGGRKIMIGIADPKLWNLGVGLLSKWNGL
A0A5K1HT79 Uncharacterized protein (Fragment)3.4e-1061.29Show/hide
Query:  MATNHGVGVQIPHRPQPAKKGR-----TFPSGGRKIMIGIADPKLWNLGVGLLSKWNGLIFF
        +ATNHGVG   P  P    KG         SGGRKIMIGIAD KLWN GVGLLSKWNGL  +
Subjt:  MATNHGVGVQIPHRPQPAKKGR-----TFPSGGRKIMIGIADPKLWNLGVGLLSKWNGLIFF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACGAACCACGGTGTCGGGGTTCAAATCCCTCATCGCCCACAACCGGCCAAAAAGGGAAGGACATTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGA
CCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGTCGAAATGGAATGGCCTTATCTTTTTCTTTTTTCTTTTTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTACGAACCACGGTGTCGGGGTTCAAATCCCTCATCGCCCACAACCGGCCAAAAAGGGAAGGACATTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGA
CCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGTCGAAATGGAATGGCCTTATCTTTTTCTTTTTTCTTTTTCGTTAG
Protein sequenceShow/hide protein sequence
MATNHGVGVQIPHRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLLSKWNGLIFFFFLFR