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Sed0027524 (gene) of Chayote v1 genome

Gene IDSed0027524
OrganismSechium edule (Chayote v1)
DescriptionE3 ubiquitin-protein ligase SIS3-like
Genome locationLG08:37819993..37820582
RNA-Seq ExpressionSed0027524
SyntenySed0027524
Gene Ontology termsGO:0010182 - sugar mediated signaling pathway (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044793 - E3 ubiquitin-protein ligase SIS3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573053.1 E3 ubiquitin-protein ligase SIS3, partial [Cucurbita argyrosperma subsp. sororia]1.6e-1975.41Show/hide
Query:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP
        +EA +QE+P+FGLKAV TDCSECPICLEEFHV      MPCAHNFH ECIDEWLR N KCP
Subjt:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP

XP_022954674.1 E3 ubiquitin-protein ligase SIS3-like isoform X1 [Cucurbita moschata]1.6e-1975.41Show/hide
Query:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP
        +EA +QE+P+FGLKAV TDCSECPICLEEFHV      MPCAHNFH ECIDEWLR N KCP
Subjt:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP

XP_022954675.1 E3 ubiquitin-protein ligase SIS3-like isoform X2 [Cucurbita moschata]1.6e-1975.41Show/hide
Query:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP
        +EA +QE+P+FGLKAV TDCSECPICLEEFHV      MPCAHNFH ECIDEWLR N KCP
Subjt:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP

XP_023542126.1 E3 ubiquitin-protein ligase SIS3-like isoform X1 [Cucurbita pepo subsp. pepo]1.6e-1975.41Show/hide
Query:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP
        +EA +QE+P+FGLKAV TDCSECPICLEEFHV      MPCAHNFH ECIDEWLR N KCP
Subjt:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP

XP_023542127.1 E3 ubiquitin-protein ligase SIS3-like isoform X2 [Cucurbita pepo subsp. pepo]1.6e-1975.41Show/hide
Query:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP
        +EA +QE+P+FGLKAV TDCSECPICLEEFHV      MPCAHNFH ECIDEWLR N KCP
Subjt:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP

TrEMBL top hitse value%identityAlignment
A0A5A7UWL2 E3 ubiquitin-protein ligase SIS3-like1.7e-1940.13Show/hide
Query:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP---------LDVAPQASQTSTTVLFLACIGTQNKHICQW
        +EA ++E+P F LKAV TDCSECPICLEEFHV      +PCAHNFH  CIDEWLR N KCP         LD++  ++  S T    A + T N+++   
Subjt:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP---------LDVAPQASQTSTTVLFLACIGTQNKHICQW

Query:  LHNKPTFKSV---------EIQSEPRSLFG-----SVLNAAENGIVIDRV---QNPP
          ++P+ +S           +++E     G     S L AAENG   D+    ++PP
Subjt:  LHNKPTFKSV---------EIQSEPRSLFG-----SVLNAAENGIVIDRV---QNPP

A0A5N6RRC1 RING-type domain-containing protein1.7e-1951.55Show/hide
Query:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP---------LDVAPQASQTSTTVLFLACIGTQNKHI
        +EA +QE+P+F LKAV TDCSECPICLEEFHV      +PCAHNFH ECIDEWLR N KCP         LD++  ++  + T    A + T N+++
Subjt:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP---------LDVAPQASQTSTTVLFLACIGTQNKHI

A0A6J1GT25 E3 ubiquitin-protein ligase SIS3-like isoform X27.8e-2075.41Show/hide
Query:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP
        +EA +QE+P+FGLKAV TDCSECPICLEEFHV      MPCAHNFH ECIDEWLR N KCP
Subjt:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP

A0A6J1GTN6 E3 ubiquitin-protein ligase SIS3-like isoform X17.8e-2075.41Show/hide
Query:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP
        +EA +QE+P+FGLKAV TDCSECPICLEEFHV      MPCAHNFH ECIDEWLR N KCP
Subjt:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCP

A0A7J7G217 RING-type domain-containing protein1.7e-1964.86Show/hide
Query:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCPLDVAPQASQTSTT
        +EA +QE+P+F LKAV TDCSECPICLEEFHV      +PCAHNFH ECIDEWLR N KCP      AS  +TT
Subjt:  MEARLQEIPRFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCPLDVAPQASQTSTT

SwissProt top hitse value%identityAlignment
Q08CG8 RING finger protein 443.6e-0633.33Show/hide
Query:  EARLQEIP--RFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCPL
        +A ++++P  RF L+   ++ + C +C  +F        +PC H FHA+C+D+WL+ N  CP+
Subjt:  EARLQEIP--RFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCPL

Q3UHJ8 RING finger protein 443.6e-0633.33Show/hide
Query:  EARLQEIP--RFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCPL
        +A ++++P  RF   +  ++ + C +C  +F V      +PC H FHA+C+D+WL+ N  CP+
Subjt:  EARLQEIP--RFGLKAVATDCSECPICLEEFHVHG--TSMPCAHNFHAECIDEWLRPNFKCPL

Q67YI6 RING-H2 finger protein ATL652.8e-0648Show/hide
Query:  KAVATDCSECPICLEEFHV--HGTSMP-CAHNFHAECIDEWLRPNFKCPL
        K  A +C +C +CL EF    +  ++P C H FH ECIDEWLR +  CPL
Subjt:  KAVATDCSECPICLEEFHV--HGTSMP-CAHNFHAECIDEWLRPNFKCPL

Q8GYT9 E3 ubiquitin-protein ligase SIS33.2e-1863.93Show/hide
Query:  MEARLQEIPRFGLKAVATDCSECPICLEEFHV--HGTSMPCAHNFHAECIDEWLRPNFKCP
        +EA +QE+P+F LKAV  DC EC ICLEEFH+      +PCAHNFH ECID+WLR N KCP
Subjt:  MEARLQEIPRFGLKAVATDCSECPICLEEFHV--HGTSMPCAHNFHAECIDEWLRPNFKCP

Q9LY41 E3 ubiquitin-protein ligase ATL42.1e-0633.33Show/hide
Query:  LQEIPRFGLKAV-----ATDCSECPICLEEFHVHG--TSMP-CAHNFHAECIDEWLRPNFKCPLDVAPQASQTSTTVLFLACIGTQN
        L  +P F   +V     + +  +C +CL +F        +P C H FHA+CID WL  N  CPL  +P  +  S  +  LA +G+ N
Subjt:  LQEIPRFGLKAV-----ATDCSECPICLEEFHVHG--TSMP-CAHNFHAECIDEWLRPNFKCPLDVAPQASQTSTTVLFLACIGTQN

Arabidopsis top hitse value%identityAlignment
AT1G74620.1 RING/U-box superfamily protein4.4e-0740.38Show/hide
Query:  LKAVATDCSECPICLEEFHVHGTS----MPCAHNFHAECIDEWLRPNFKCPL
        L    T+ + C IC+E++ + G+S    +PC H FH +CI++WL+ N  CPL
Subjt:  LKAVATDCSECPICLEEFHVHGTS----MPCAHNFHAECIDEWLRPNFKCPL

AT3G18930.1 RING/U-box superfamily protein2.0e-0748Show/hide
Query:  KAVATDCSECPICLEEFHV--HGTSMP-CAHNFHAECIDEWLRPNFKCPL
        K  A +C +C +CL EF    +  ++P C H FH ECIDEWLR +  CPL
Subjt:  KAVATDCSECPICLEEFHV--HGTSMP-CAHNFHAECIDEWLRPNFKCPL

AT3G18930.2 RING/U-box superfamily protein2.0e-0748Show/hide
Query:  KAVATDCSECPICLEEFHV--HGTSMP-CAHNFHAECIDEWLRPNFKCPL
        K  A +C +C +CL EF    +  ++P C H FH ECIDEWLR +  CPL
Subjt:  KAVATDCSECPICLEEFHV--HGTSMP-CAHNFHAECIDEWLRPNFKCPL

AT3G47990.1 SUGAR-INSENSITIVE 32.3e-1963.93Show/hide
Query:  MEARLQEIPRFGLKAVATDCSECPICLEEFHV--HGTSMPCAHNFHAECIDEWLRPNFKCP
        +EA +QE+P+F LKAV  DC EC ICLEEFH+      +PCAHNFH ECID+WLR N KCP
Subjt:  MEARLQEIPRFGLKAVATDCSECPICLEEFHV--HGTSMPCAHNFHAECIDEWLRPNFKCP

AT3G60220.1 TOXICOS EN LEVADURA 41.5e-0733.33Show/hide
Query:  LQEIPRFGLKAV-----ATDCSECPICLEEFHVHG--TSMP-CAHNFHAECIDEWLRPNFKCPLDVAPQASQTSTTVLFLACIGTQN
        L  +P F   +V     + +  +C +CL +F        +P C H FHA+CID WL  N  CPL  +P  +  S  +  LA +G+ N
Subjt:  LQEIPRFGLKAV-----ATDCSECPICLEEFHVHG--TSMP-CAHNFHAECIDEWLRPNFKCPLDVAPQASQTSTTVLFLACIGTQN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCTCGGCTCCAGGAAATTCCGAGGTTCGGGCTGAAGGCGGTCGCAACTGATTGCAGCGAATGCCCGATTTGCCTCGAAGAGTTCCATGTTCACGGTACCAGTAT
GCCGTGTGCTCACAACTTCCATGCCGAGTGTATCGATGAGTGGCTTCGTCCGAACTTCAAATGTCCTCTCGATGTCGCTCCTCAGGCTTCCCAAACCTCGACCACAGTGC
TCTTTCTAGCCTGCATTGGGACACAGAACAAGCATATCTGTCAATGGCTTCACAACAAGCCAACCTTCAAGTCCGTTGAGATCCAGTCCGAGCCCCGCAGTTTATTCGGC
AGTGTCTTAAATGCAGCGGAGAATGGTATCGTCATTGATCGGGTACAAAACCCCCCGCCTTTTTTGTCTCTCAAGTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGCTCGGCTCCAGGAAATTCCGAGGTTCGGGCTGAAGGCGGTCGCAACTGATTGCAGCGAATGCCCGATTTGCCTCGAAGAGTTCCATGTTCACGGTACCAGTAT
GCCGTGTGCTCACAACTTCCATGCCGAGTGTATCGATGAGTGGCTTCGTCCGAACTTCAAATGTCCTCTCGATGTCGCTCCTCAGGCTTCCCAAACCTCGACCACAGTGC
TCTTTCTAGCCTGCATTGGGACACAGAACAAGCATATCTGTCAATGGCTTCACAACAAGCCAACCTTCAAGTCCGTTGAGATCCAGTCCGAGCCCCGCAGTTTATTCGGC
AGTGTCTTAAATGCAGCGGAGAATGGTATCGTCATTGATCGGGTACAAAACCCCCCGCCTTTTTTGTCTCTCAAGTTATAG
Protein sequenceShow/hide protein sequence
MEARLQEIPRFGLKAVATDCSECPICLEEFHVHGTSMPCAHNFHAECIDEWLRPNFKCPLDVAPQASQTSTTVLFLACIGTQNKHICQWLHNKPTFKSVEIQSEPRSLFG
SVLNAAENGIVIDRVQNPPPFLSLKL