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Sed0027568 (gene) of Chayote v1 genome

Gene IDSed0027568
OrganismSechium edule (Chayote v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationLG14:10585394..10587844
RNA-Seq ExpressionSed0027568
SyntenySed0027568
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051908.1 putative gag protein [Cucumis melo var. makuwa]6.8e-1965.88Show/hide
Query:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
        P+V D NVAILQA+QGM+++MRE+R+E RA Q+RE R  Q+DEGM DL   ER  GGRG+ RG GRNN AN+MQPRR+ER+HEDR
Subjt:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
KAA0066461.1 uncharacterized protein E6C27_scaffold21G005620 [Cucumis melo var. makuwa]2.3e-1967.06Show/hide
Query:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
        P+V D NVAILQA+QGM+++MRE+R+E RA Q+RE R  Q+DEGM DL   ER  GGRG+ RG GRNN AN+MQPRR+ERMHEDR
Subjt:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]6.8e-1965.88Show/hide
Query:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
        P+V D NVAILQA+QGM+++MRE+R+E RA Q+RE R  Q+DEGM DL   ER  GGRG+ RG GRNN AN+MQPRR+ER+HEDR
Subjt:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]6.8e-1965.88Show/hide
Query:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
        P+V D NVAILQA+QGM+++MRE+R+E RA Q+RE R  Q+DEGM DL   ER  GGRG+ RG GRNN AN+MQPRR+ER+HEDR
Subjt:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]6.8e-1965.88Show/hide
Query:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
        P+V D NVAILQA+QGM+++MRE+R+E RA Q+RE R  Q+DEGM DL   ER  GGRG+ RG GRNN AN+MQPRR+ER+HEDR
Subjt:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
TrEMBL top hitse value%identityAlignment
A0A5A7U9D0 Putative gag protein3.3e-1965.88Show/hide
Query:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
        P+V D NVAILQA+QGM+++MRE+R+E RA Q+RE R  Q+DEGM DL   ER  GGRG+ RG GRNN AN+MQPRR+ER+HEDR
Subjt:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
A0A5A7VII0 Uncharacterized protein3.3e-1965.88Show/hide
Query:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
        P+V D NVAILQA+QGM+++MRE+R+E RA Q+RE R  Q+DEGM DL   ER  GGRG+ RG GRNN AN+MQPRR+ER+HEDR
Subjt:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
A0A5A7VLF9 CCHC-type domain-containing protein1.1e-1967.06Show/hide
Query:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
        P+V D NVAILQA+QGM+++MRE+R+E RA Q+RE R  Q+DEGM DL   ER  GGRG+ RG GRNN AN+MQPRR+ERMHEDR
Subjt:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
A0A5D3C3D3 F15O4.133.3e-1965.88Show/hide
Query:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
        P+V D NVAILQA+QGM+++MRE+R+E RA Q+RE R  Q+DEGM DL   ER  GGRG+ RG GRNN AN+MQPRR+ER+HEDR
Subjt:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
A0A5D3DRJ1 F15O4.133.3e-1965.88Show/hide
Query:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
        P+V D NVAILQA+QGM+++MRE+R+E RA Q+RE R  Q+DEGM DL   ER  GGRG+ RG GRNN AN+MQPRR+ER+HEDR
Subjt:  PQVPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARG-GRNNHANIMQPRRIERMHEDR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACGTTTGCGCCAAACAATCGAAACAAACAGTGATACGAATCAAACAACTGATCCATTGCATGTACCTGAAGGACCTATTACAATGAGTAAAGCGAAGAAGATTCA
AGAGGAATATATATTACATCTTCAAAAGCTTGCCAATGCACAAGAAGAGACAAAACTTTTTCATCCCGAATTTATTTACAACATTAGCACAACAAGTGAAGAAGAGATTG
AATTTGAAGATAAATCAATTCATTGGATTAGTCTTGATCAAACTAATTCTGGAAGTTGGCAACACAAACATCAATTTTCAGATTTTAGGAACTTTTATGCAACACCACAG
GTTCCGGATGTTAATGTTGCTATTCTTCAAGCCCTTCAAGGTATGATGGACATGATGAGGGAAGATAGAGAGGAAATGAGAGCACATCAGCGACGAGAAGAACGAGTATT
GCAAGATGATGAAGGTATGTTAGACTTGGTTGGACAAGAGAGACTAGGTGGAGGAAGAGGTCATGCAAGGGGAGGAAGAAATAATCATGCAAATATCATGCAACCTAGAA
GGATAGAAAGAATGCACGAAGATAGAAAGTGGAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAACGTTTGCGCCAAACAATCGAAACAAACAGTGATACGAATCAAACAACTGATCCATTGCATGTACCTGAAGGACCTATTACAATGAGTAAAGCGAAGAAGATTCA
AGAGGAATATATATTACATCTTCAAAAGCTTGCCAATGCACAAGAAGAGACAAAACTTTTTCATCCCGAATTTATTTACAACATTAGCACAACAAGTGAAGAAGAGATTG
AATTTGAAGATAAATCAATTCATTGGATTAGTCTTGATCAAACTAATTCTGGAAGTTGGCAACACAAACATCAATTTTCAGATTTTAGGAACTTTTATGCAACACCACAG
GTTCCGGATGTTAATGTTGCTATTCTTCAAGCCCTTCAAGGTATGATGGACATGATGAGGGAAGATAGAGAGGAAATGAGAGCACATCAGCGACGAGAAGAACGAGTATT
GCAAGATGATGAAGGTATGTTAGACTTGGTTGGACAAGAGAGACTAGGTGGAGGAAGAGGTCATGCAAGGGGAGGAAGAAATAATCATGCAAATATCATGCAACCTAGAA
GGATAGAAAGAATGCACGAAGATAGAAAGTGGAGTTAA
Protein sequenceShow/hide protein sequence
MKRLRQTIETNSDTNQTTDPLHVPEGPITMSKAKKIQEEYILHLQKLANAQEETKLFHPEFIYNISTTSEEEIEFEDKSIHWISLDQTNSGSWQHKHQFSDFRNFYATPQ
VPDVNVAILQALQGMMDMMREDREEMRAHQRREERVLQDDEGMLDLVGQERLGGGRGHARGGRNNHANIMQPRRIERMHEDRKWS