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Sed0027610 (gene) of Chayote v1 genome

Gene IDSed0027610
OrganismSechium edule (Chayote v1)
Descriptionzf-RVT domain-containing protein
Genome locationLG08:28296886..28298045
RNA-Seq ExpressionSed0027610
SyntenySed0027610
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4363267.1 hypothetical protein G4B88_016078 [Cannabis sativa]4.6e-0533.33Show/hide
Query:  VVKDYIPEEGC-WNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVK----RAHKCGNNIESISHTFFG-------CKLAKKI--WNSL
        +VKD I E    WN+  L + L  E D  C+ SIPICK   DD W+W+F + G +SVK    RA +  ++I S S   F          +A ++   +  
Subjt:  VVKDYIPEEGC-WNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVK----RAHKCGNNIESISHTFFG-------CKLAKKI--WNSL

Query:  NIGVNPLWAIWNDRIKVNAG
         + +   W IW +R +V  G
Subjt:  NIGVNPLWAIWNDRIKVNAG

KAF4404898.1 hypothetical protein G4B88_006284 [Cannabis sativa]4.6e-0528Show/hide
Query:  RRKCKKLWKGGKGGAEEEV--VKDYIPEEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAHKCGNNIE-----SISHT---
        R + + +W   +     EV  V D I   GCWN   +     L  D  C+SSIP+     +D W WH+T +G +SV   +     ++     S S     
Subjt:  RRKCKKLWKGGKGGAEEEV--VKDYIPEEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAHKCGNNIE-----SISHT---

Query:  ----FFGCKLAKKI----WNSLNIGVNPLWAIWNDRIKVNAGEAELTGFG
            F+G K+ +KI    W   +  + P       R  V+    EL GFG
Subjt:  ----FFGCKLAKKI----WNSLNIGVNPLWAIWNDRIKVNAGEAELTGFG

OMO77499.1 putative ribonuclease H protein [Corchorus olitorius]7.2e-0631.63Show/hide
Query:  VVKDYIP-EEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAH-----KCGNNIESISHTFFGCKLAKKIWNSLNIGVNP
        +VKD I  +   W +D L  +  L      +  +PI    + D+ IWHFTK   + VK  +     +CG  +ESI H  F C  A+ +W + N    P
Subjt:  VVKDYIP-EEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAH-----KCGNNIESISHTFFGCKLAKKIWNSLNIGVNP

OMO91045.1 Endonuclease/exonuclease/phosphatase [Corchorus capsularis]3.6e-0532.5Show/hide
Query:  CKKLWKGGKGGAEEEVVKDYIP-EEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAHKC----GNNIESISHTFFGCKLA-
        C K+++ G       +VKD I  E  CW  + +      + D+  +  IPI   Q+DDR IWHFT+ G +SVK  +K      ++I+    +  G + A 
Subjt:  CKKLWKGGKGGAEEEVVKDYIP-EEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAHKC----GNNIESISHTFFGCKLA-

Query:  --KKIWNSLNIGVNPLWAIW
          +KIWN LN+       IW
Subjt:  --KKIWNSLNIGVNPLWAIW

XP_021801569.1 uncharacterized protein LOC110745747 isoform X1 [Prunus avium]8.5e-0733.68Show/hide
Query:  EEEVVKDYIPEEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAHK--------CGNNIESISHTFFGCKLAKKIWN
        +E  V D+I   G WN+D L ++   E+DV  ++SIP+      DRWIWH+T  G +SVK  ++        C   + S S     C   +K+W+
Subjt:  EEEVVKDYIPEEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAHK--------CGNNIESISHTFFGCKLAKKIWN

TrEMBL top hitse value%identityAlignment
A0A1R3I4N6 Putative ribonuclease H protein3.5e-0631.63Show/hide
Query:  VVKDYIP-EEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAH-----KCGNNIESISHTFFGCKLAKKIWNSLNIGVNP
        +VKD I  +   W +D L  +  L      +  +PI    + D+ IWHFTK   + VK  +     +CG  +ESI H  F C  A+ +W + N    P
Subjt:  VVKDYIP-EEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAH-----KCGNNIESISHTFFGCKLAKKIWNSLNIGVNP

A0A1R3J874 Endonuclease/exonuclease/phosphatase1.7e-0532.5Show/hide
Query:  CKKLWKGGKGGAEEEVVKDYIP-EEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAHKC----GNNIESISHTFFGCKLA-
        C K+++ G       +VKD I  E  CW  + +      + D+  +  IPI   Q+DDR IWHFT+ G +SVK  +K      ++I+    +  G + A 
Subjt:  CKKLWKGGKGGAEEEVVKDYIP-EEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAHKC----GNNIESISHTFFGCKLA-

Query:  --KKIWNSLNIGVNPLWAIW
          +KIWN LN+       IW
Subjt:  --KKIWNSLNIGVNPLWAIW

A0A6P5RF81 uncharacterized protein LOC110745747 isoform X14.1e-0733.68Show/hide
Query:  EEEVVKDYIPEEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAHK--------CGNNIESISHTFFGCKLAKKIWN
        +E  V D+I   G WN+D L ++   E+DV  ++SIP+      DRWIWH+T  G +SVK  ++        C   + S S     C   +K+W+
Subjt:  EEEVVKDYIPEEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAHK--------CGNNIESISHTFFGCKLAKKIWN

A0A7J6EXV6 Uncharacterized protein2.2e-0533.33Show/hide
Query:  VVKDYIPEEGC-WNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVK----RAHKCGNNIESISHTFFG-------CKLAKKI--WNSL
        +VKD I E    WN+  L + L  E D  C+ SIPICK   DD W+W+F + G +SVK    RA +  ++I S S   F          +A ++   +  
Subjt:  VVKDYIPEEGC-WNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVK----RAHKCGNNIESISHTFFG-------CKLAKKI--WNSL

Query:  NIGVNPLWAIWNDRIKVNAG
         + +   W IW +R +V  G
Subjt:  NIGVNPLWAIWNDRIKVNAG

A0A803NGI9 Uncharacterized protein2.0e-0626.52Show/hide
Query:  GAEEEVVKDYIPEEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAHK----------------------------------
        G  + +V  YI ++  WN+  L+       DV+ + SIP+  + + D+WIWHFT   E++V+  +                                   
Subjt:  GAEEEVVKDYIPEEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAHK----------------------------------

Query:  --CGNNIESISHTFFGCKLAKKIWNSLNIGVN
          C N  ES+ H  F CK AKK+W    I +N
Subjt:  --CGNNIESISHTFFGCKLAKKIWNSLNIGVN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTTGTCTCCAACTTTGGAAAATATTTGGGGCTCCCAGCCATTGCTCGAGAAGTAAGAGGAATGATTTTTACTATATTAAGGAGAAAGTGCAAAAAGTTGTGGAA
AGGTGGAAAGGGAGGTGCTGAAGAGGAGGTAGTAAAGGACTATATTCCAGAAGAGGGATGTTGGAATATGGATAAACTGTCCTCTGTTCTTCTTTTGGAGGATGATGTTA
ATTGTGTGTCTTCTATCCCTATCTGTAAAACTCAGTTGGATGACAGATGGATATGGCACTTTACTAAATATGGAGAATTCTCAGTTAAAAGGGCTCACAAGTGTGGAAAC
AACATCGAATCTATTAGCCATACCTTTTTCGGTTGCAAGCTTGCCAAGAAGATTTGGAATTCGTTGAATATTGGAGTTAATCCTCTATGGGCTATTTGGAATGACAGGAT
CAAAGTTAATGCAGGAGAAGCAGAGTTAACTGGATTTGGAGCTACTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGTTGTCTCCAACTTTGGAAAATATTTGGGGCTCCCAGCCATTGCTCGAGAAGTAAGAGGAATGATTTTTACTATATTAAGGAGAAAGTGCAAAAAGTTGTGGAA
AGGTGGAAAGGGAGGTGCTGAAGAGGAGGTAGTAAAGGACTATATTCCAGAAGAGGGATGTTGGAATATGGATAAACTGTCCTCTGTTCTTCTTTTGGAGGATGATGTTA
ATTGTGTGTCTTCTATCCCTATCTGTAAAACTCAGTTGGATGACAGATGGATATGGCACTTTACTAAATATGGAGAATTCTCAGTTAAAAGGGCTCACAAGTGTGGAAAC
AACATCGAATCTATTAGCCATACCTTTTTCGGTTGCAAGCTTGCCAAGAAGATTTGGAATTCGTTGAATATTGGAGTTAATCCTCTATGGGCTATTTGGAATGACAGGAT
CAAAGTTAATGCAGGAGAAGCAGAGTTAACTGGATTTGGAGCTACTGAATGA
Protein sequenceShow/hide protein sequence
MSVVSNFGKYLGLPAIAREVRGMIFTILRRKCKKLWKGGKGGAEEEVVKDYIPEEGCWNMDKLSSVLLLEDDVNCVSSIPICKTQLDDRWIWHFTKYGEFSVKRAHKCGN
NIESISHTFFGCKLAKKIWNSLNIGVNPLWAIWNDRIKVNAGEAELTGFGATE